Wall clock time and date at job start Mon Mar 30 2020 05:00:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86803 * 119.99667 * 2 1 4 4 H 1.48495 * 109.47063 * 269.99773 * 3 2 1 5 5 H 1.48508 * 109.47084 * 30.00082 * 3 2 1 6 6 H 1.48500 * 109.46941 * 149.99825 * 3 2 1 7 7 C 1.39941 * 120.00398 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99785 * 161.97357 * 7 2 1 9 9 C 1.41399 * 120.00087 * 341.98285 * 7 2 1 10 10 C 1.40715 * 120.23321 * 335.54508 * 9 7 2 11 11 C 1.37714 * 119.73289 * 179.97438 * 10 9 7 12 12 Cl 1.73595 * 119.89429 * 179.97438 * 11 10 9 13 13 C 1.38780 * 120.21753 * 359.97438 * 11 10 9 14 14 C 1.38588 * 120.49096 * 359.97438 * 13 11 10 15 15 S 1.76204 * 119.87159 * 179.97438 * 14 13 11 16 16 N 1.65606 * 107.21537 * 270.02342 * 15 14 13 17 17 O 1.42097 * 106.39950 * 23.56127 * 15 14 13 18 18 O 1.42094 * 106.40091 * 156.48245 * 15 14 13 19 19 C 1.37647 * 120.26068 * 0.02562 * 14 13 11 20 20 H 0.97001 * 120.00235 * 0.02562 * 1 2 3 21 21 H 1.07995 * 120.13610 * 359.69844 * 10 9 7 22 22 H 1.08011 * 119.75368 * 180.02562 * 13 11 10 23 23 H 0.97001 * 120.00251 * 0.02562 * 16 15 14 24 24 H 0.96996 * 119.99578 * 179.97438 * 16 15 14 25 25 H 1.07998 * 120.11209 * 180.02562 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4897 2.0465 -1.4000 5 1 1.4395 2.6527 0.7001 6 1 3.5397 1.4403 0.7001 7 6 2.0080 -1.2119 0.0005 8 1 3.0483 -1.2348 -0.2889 9 6 1.3532 -2.4063 0.3798 10 6 0.2248 -2.3598 1.2194 11 6 -0.4054 -3.5294 1.5819 12 17 -1.7972 -3.4770 2.6180 13 6 0.0686 -4.7499 1.1217 14 6 1.1785 -4.8062 0.2936 15 16 1.7668 -6.3647 -0.2806 16 7 2.8699 -6.9107 0.8273 17 8 0.6627 -7.2571 -0.2208 18 8 2.4922 -6.1046 -1.4745 19 6 1.8237 -3.6495 -0.0812 20 1 -0.4850 0.8400 -0.0004 21 1 -0.1428 -1.4112 1.5816 22 1 -0.4317 -5.6626 1.4104 23 1 3.0725 -6.3787 1.6128 24 1 3.3129 -7.7628 0.6912 25 1 2.6881 -3.6962 -0.7269 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000116930853.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:50 Heat of formation + Delta-G solvation = -98.457949 kcal Electronic energy + Delta-G solvation = -15109.528000 eV Core-core repulsion = 12239.143132 eV Total energy + Delta-G solvation = -2870.384869 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 261.001 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.69887 -38.12064 -37.27335 -36.83348 -35.71890 -33.97776 -31.97834 -31.53513 -27.50224 -23.94289 -22.94836 -20.63698 -19.83146 -18.33222 -18.12692 -17.44726 -16.95292 -16.58859 -16.26469 -15.66830 -15.46413 -14.65285 -14.27813 -13.46473 -13.16912 -13.13302 -13.10376 -13.08157 -12.97376 -12.72588 -12.46892 -12.31436 -12.02765 -11.76353 -11.38835 -11.27830 -11.16776 -9.91177 -9.55398 -8.79879 -6.53405 -0.45686 0.22443 0.60546 1.34575 1.39480 1.44423 1.54676 2.15573 2.27941 2.42890 2.78122 3.36740 3.78062 4.31383 4.49781 4.67633 4.87820 5.03909 5.16929 5.34119 5.34380 5.58740 5.78019 5.85189 6.34976 6.42971 6.66585 6.70486 8.17341 Molecular weight = 261.00amu Principal moments of inertia in cm(-1) A = 0.020203 B = 0.007768 C = 0.005907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.580302 B = 3603.462522 C = 4738.894327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.036 3.964 3 Si 0.986 3.014 4 H -0.263 1.263 5 H -0.267 1.267 6 H -0.253 1.253 7 C -0.482 4.482 8 H 0.094 0.906 9 C 0.072 3.928 10 C -0.135 4.135 11 C -0.027 4.027 12 Cl -0.090 7.090 13 C -0.151 4.151 14 C -0.619 4.619 15 S 2.736 3.264 16 N -1.231 6.231 17 O -0.998 6.998 18 O -1.000 7.000 19 C -0.134 4.134 20 H 0.295 0.705 21 H 0.122 0.878 22 H 0.138 0.862 23 H 0.429 0.571 24 H 0.429 0.571 25 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.297 -4.828 4.279 7.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.181 4.181 3 Si 0.806 3.194 4 H -0.187 1.187 5 H -0.192 1.192 6 H -0.176 1.176 7 C -0.510 4.510 8 H 0.112 0.888 9 C 0.068 3.932 10 C -0.155 4.155 11 C -0.054 4.054 12 Cl -0.062 7.062 13 C -0.173 4.173 14 C -0.707 4.707 15 S 2.826 3.174 16 N -0.911 5.911 17 O -0.987 6.987 18 O -0.989 6.989 19 C -0.155 4.155 20 H 0.106 0.894 21 H 0.140 0.860 22 H 0.155 0.845 23 H 0.259 0.741 24 H 0.262 0.738 25 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 3.565 -5.058 3.434 7.077 hybrid contribution -0.001 1.322 0.714 1.502 sum 3.564 -3.737 4.147 6.623 Atomic orbital electron populations 1.69812 1.09218 1.31487 1.33498 1.26853 0.95469 1.04924 0.90872 0.85125 0.79252 0.75369 0.79641 1.18718 1.19185 1.17633 1.19961 0.99144 0.91713 1.40203 0.88831 1.17927 0.91683 0.93528 0.90042 1.21483 0.98647 0.96263 0.99154 1.20890 0.91115 0.95526 0.97883 1.98273 1.42268 1.98955 1.66675 1.20209 0.98129 0.96501 1.02443 1.29952 1.07997 1.19164 1.13592 1.00217 0.72726 0.72105 0.72382 1.52583 1.62552 1.34711 1.41260 1.93522 1.54468 1.64021 1.86683 1.93530 1.73136 1.85572 1.46649 1.21044 1.01809 0.91564 1.01079 0.89423 0.86009 0.84453 0.74147 0.73765 0.85388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -39.67 10.97 21.83 0.24 -39.43 15 2 C 0.04 1.65 5.14 85.26 0.44 2.09 15 3 Si 0.99 34.84 29.60 68.60 2.03 36.87 15 4 H -0.26 -9.05 7.11 99.48 0.71 -8.35 15 5 H -0.27 -9.09 7.11 99.48 0.71 -8.38 15 6 H -0.25 -8.64 7.11 99.48 0.71 -7.94 15 7 C -0.48 -23.54 9.05 23.46 0.21 -23.33 15 8 H 0.09 4.29 7.91 -2.91 -0.02 4.27 15 9 C 0.07 3.56 5.57 -21.29 -0.12 3.44 15 10 C -0.13 -6.58 8.46 22.75 0.19 -6.39 15 11 C -0.03 -1.18 6.31 22.28 0.14 -1.04 15 12 Cl -0.09 -3.45 28.95 -2.72 -0.08 -3.53 15 13 C -0.15 -6.21 9.31 22.48 0.21 -6.01 15 14 C -0.62 -24.55 5.93 22.21 0.13 -24.42 15 15 S 2.74 88.78 6.28 -56.49 -0.35 88.43 15 16 N -1.23 -25.93 9.55 37.02 0.35 -25.57 15 17 O -1.00 -36.99 17.27 -128.00 -2.21 -39.20 15 18 O -1.00 -38.27 17.27 -128.00 -2.21 -40.48 15 19 C -0.13 -5.96 9.26 22.73 0.21 -5.75 15 20 H 0.29 12.94 8.30 -92.71 -0.77 12.17 15 21 H 0.12 6.20 6.18 -2.91 -0.02 6.18 15 22 H 0.14 5.10 7.60 -2.90 -0.02 5.08 15 23 H 0.43 7.47 8.92 -96.74 -0.86 6.61 15 24 H 0.43 6.56 8.96 -96.75 -0.87 5.69 15 25 H 0.13 5.37 7.60 -2.91 -0.02 5.35 15 Total: -1.00 -62.36 255.70 -1.28 -63.63 By element: Atomic # 1 Polarization: 21.14 SS G_CDS: -0.46 Total: 20.67 kcal Atomic # 6 Polarization: -62.81 SS G_CDS: 1.42 Total: -61.39 kcal Atomic # 7 Polarization: -65.60 SS G_CDS: 0.59 Total: -65.00 kcal Atomic # 8 Polarization: -75.26 SS G_CDS: -4.42 Total: -79.68 kcal Atomic # 14 Polarization: 34.84 SS G_CDS: 2.03 Total: 36.87 kcal Atomic # 16 Polarization: 88.78 SS G_CDS: -0.35 Total: 88.43 kcal Atomic # 17 Polarization: -3.45 SS G_CDS: -0.08 Total: -3.53 kcal Total: -62.36 -1.28 -63.63 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000116930853.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.825 kcal (2) G-P(sol) polarization free energy of solvation -62.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds