Wall clock time and date at job start Mon Mar 30 2020 04:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48501 * 109.47056 * 274.99449 * 3 2 1 5 5 H 1.48498 * 109.47023 * 34.99293 * 3 2 1 6 6 H 1.48499 * 109.47338 * 154.99499 * 3 2 1 7 7 C 1.37884 * 119.99738 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99758 * 188.93505 * 7 2 1 9 9 C 1.50698 * 119.99758 * 8.93743 * 7 2 1 10 10 H 1.08995 * 108.97954 * 306.63242 * 9 7 2 11 11 C 1.50782 * 108.99368 * 65.47694 * 9 7 2 12 12 N 1.47686 * 108.09519 * 215.15772 * 11 9 7 13 13 C 1.40087 * 114.57289 * 278.67705 * 12 11 9 14 14 C 1.54516 * 111.50310 * 61.44917 * 13 12 11 15 15 C 1.50750 * 108.95020 * 283.99900 * 14 13 12 16 16 N 1.47754 * 108.92520 * 187.83232 * 9 7 2 17 17 C 1.46906 * 110.99457 * 72.23366 * 16 9 7 18 18 C 1.50700 * 109.46832 * 189.99974 * 17 16 9 19 19 C 1.38239 * 119.99883 * 269.72517 * 18 17 16 20 20 C 1.38231 * 119.99783 * 179.76462 * 19 18 17 21 21 C 1.38241 * 120.00153 * 0.48635 * 20 19 18 22 22 C 1.38231 * 119.99567 * 359.79002 * 21 20 19 23 23 C 1.38234 * 120.00584 * 359.95576 * 22 21 20 24 24 H 0.96996 * 119.99893 * 359.97438 * 1 2 3 25 25 H 1.09005 * 109.73682 * 95.50935 * 11 9 7 26 26 H 1.08991 * 109.73733 * 334.80897 * 11 9 7 27 27 H 1.00896 * 111.00067 * 151.98248 * 12 11 9 28 28 H 1.08999 * 109.07646 * 300.93168 * 13 12 11 29 29 H 1.08994 * 109.07282 * 181.97236 * 13 12 11 30 30 H 1.08999 * 109.56007 * 43.83459 * 14 13 12 31 31 H 1.08997 * 109.56089 * 164.15826 * 14 13 12 32 32 H 1.08998 * 108.78657 * 213.54888 * 15 14 13 33 33 H 1.09002 * 108.78352 * 331.75235 * 15 14 13 34 34 H 1.08999 * 109.46775 * 309.99430 * 17 16 9 35 35 H 1.08999 * 109.47158 * 70.00072 * 17 16 9 36 36 H 1.07996 * 119.99802 * 0.02562 * 19 18 17 37 37 H 1.07998 * 120.00053 * 180.25186 * 20 19 18 38 38 H 1.07996 * 119.99504 * 179.76828 * 21 20 19 39 39 H 1.08001 * 119.99649 * 179.97438 * 22 21 20 40 40 H 1.07997 * 120.00376 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3911 2.1073 -1.3948 5 1 1.5034 2.6198 0.8029 6 1 3.5955 1.4119 0.5918 7 6 2.0045 -1.1941 0.0005 8 1 3.0746 -1.1998 0.1458 9 6 1.2646 -2.4913 -0.2016 10 1 0.4499 -2.5509 0.5200 11 6 0.6888 -2.5159 -1.5950 12 7 -0.6096 -3.2177 -1.5425 13 6 -0.5172 -4.6154 -1.5542 14 6 0.2599 -5.1419 -0.3268 15 6 1.7327 -4.9010 -0.5395 16 7 2.1955 -3.6151 0.0301 17 6 2.5074 -3.7541 1.4589 18 6 3.6358 -4.7376 1.6333 19 6 3.3611 -6.0815 1.8049 20 6 4.3963 -6.9843 1.9600 21 6 5.7060 -6.5419 1.9535 22 6 5.9805 -5.1973 1.7876 23 6 4.9455 -4.2952 1.6272 24 1 -0.4850 0.8400 0.0004 25 1 1.3668 -3.0457 -2.2642 26 1 0.5420 -1.4961 -1.9506 27 1 -1.2273 -2.8901 -2.2699 28 1 -0.0041 -4.9310 -2.4626 29 1 -1.5215 -5.0388 -1.5484 30 1 -0.0705 -4.6145 0.5681 31 1 0.0780 -6.2103 -0.2105 32 1 2.2920 -5.7127 -0.0743 33 1 1.9379 -4.9050 -1.6101 34 1 2.8039 -2.7858 1.8619 35 1 1.6262 -4.1143 1.9898 36 1 2.3378 -6.4266 1.8136 37 1 4.1818 -8.0347 2.0900 38 1 6.5146 -7.2468 2.0784 39 1 7.0037 -4.8516 1.7829 40 1 5.1599 -3.2447 1.4972 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000222507083.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:04 Heat of formation + Delta-G solvation = 42.309260 kcal Electronic energy + Delta-G solvation = -20121.106547 eV Core-core repulsion = 17321.723727 eV Total energy + Delta-G solvation = -2799.382820 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.32099 -38.08535 -34.63577 -33.18689 -31.15026 -30.70777 -30.46445 -27.23384 -25.91775 -23.84774 -23.29549 -22.19015 -20.97587 -19.91000 -18.62167 -16.66365 -16.39409 -15.66387 -15.17351 -14.87313 -14.68390 -14.28448 -14.13845 -13.52208 -13.33438 -13.08365 -12.65818 -12.41185 -12.23117 -11.79598 -11.49244 -11.27479 -11.16859 -10.90937 -10.85427 -10.65031 -10.49868 -10.27968 -9.93748 -9.89622 -9.67520 -9.01531 -8.58543 -8.40801 -8.36460 -7.38678 -7.03282 -5.94560 -3.98847 1.66471 1.70710 3.32977 3.40768 3.44056 4.07500 4.45430 5.07186 5.08702 5.16312 5.20267 5.30418 5.36780 5.42742 5.47477 5.61140 5.80271 5.83128 5.88065 6.05590 6.17427 6.24908 6.30182 6.38044 6.39607 6.46826 6.61353 6.65409 6.73384 6.78098 6.86676 6.90874 7.08926 7.27563 7.32301 7.63318 7.91257 8.12262 8.20918 8.31830 8.43886 8.69904 9.12276 9.64564 11.10499 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.017567 B = 0.007450 C = 0.005500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.522776 B = 3757.427094 C = 5089.308612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.061 3.939 3 Si 0.887 3.113 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.274 1.274 7 C -0.508 4.508 8 H 0.061 0.939 9 C 0.221 3.779 10 H 0.027 0.973 11 C 0.092 3.908 12 N -0.700 5.700 13 C 0.088 3.912 14 C -0.148 4.148 15 C 0.048 3.952 16 N -0.534 5.534 17 C 0.101 3.899 18 C -0.059 4.059 19 C -0.119 4.119 20 C -0.127 4.127 21 C -0.134 4.134 22 C -0.124 4.124 23 C -0.099 4.099 24 H 0.258 0.742 25 H 0.013 0.987 26 H 0.084 0.916 27 H 0.331 0.669 28 H 0.001 0.999 29 H 0.052 0.948 30 H 0.072 0.928 31 H 0.055 0.945 32 H 0.063 0.937 33 H 0.056 0.944 34 H 0.091 0.909 35 H 0.027 0.973 36 H 0.116 0.884 37 H 0.114 0.886 38 H 0.113 0.887 39 H 0.116 0.884 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.826 -11.198 1.104 12.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.141 4.141 3 Si 0.715 3.285 4 H -0.209 1.209 5 H -0.215 1.215 6 H -0.199 1.199 7 C -0.547 4.547 8 H 0.079 0.921 9 C 0.115 3.885 10 H 0.045 0.955 11 C -0.036 4.036 12 N -0.331 5.331 13 C -0.044 4.044 14 C -0.188 4.188 15 C -0.080 4.080 16 N -0.259 5.259 17 C -0.027 4.027 18 C -0.059 4.059 19 C -0.138 4.138 20 C -0.145 4.145 21 C -0.152 4.152 22 C -0.143 4.143 23 C -0.117 4.117 24 H 0.068 0.932 25 H 0.031 0.969 26 H 0.102 0.898 27 H 0.150 0.850 28 H 0.018 0.982 29 H 0.071 0.929 30 H 0.091 0.909 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.109 0.891 35 H 0.045 0.955 36 H 0.134 0.866 37 H 0.132 0.868 38 H 0.131 0.869 39 H 0.134 0.866 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 5.063 -10.928 1.512 12.138 hybrid contribution -0.163 0.524 -0.610 0.821 sum 4.900 -10.404 0.902 11.535 Atomic orbital electron populations 1.70072 1.05592 1.26232 1.49551 1.24952 0.94768 0.98845 0.95560 0.86660 0.80050 0.83881 0.77866 1.20886 1.21506 1.19919 1.21137 0.94333 0.89842 1.49438 0.92075 1.19057 0.89805 0.86504 0.93107 0.95512 1.21904 0.85736 0.97336 0.98582 1.57423 1.16694 1.04857 1.54160 1.20731 0.98338 0.89862 0.95433 1.22062 0.97719 0.99370 0.99643 1.22024 0.92941 0.93052 1.00032 1.62249 1.47891 1.03600 1.12146 1.20904 0.93181 0.97824 0.90746 1.20139 0.95347 0.94112 0.96323 1.21076 0.98827 0.93128 1.00724 1.21027 0.92993 0.99056 1.01410 1.21012 0.96378 0.95739 1.02058 1.21114 0.98893 0.93465 1.00783 1.21128 0.92067 1.00070 0.98454 0.93185 0.96902 0.89768 0.85012 0.98169 0.92917 0.90934 0.92611 0.91912 0.92565 0.89063 0.95461 0.86598 0.86774 0.86857 0.86599 0.85761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.56 12.49 55.43 0.69 -23.87 16 2 C 0.06 1.65 4.85 -17.82 -0.09 1.57 16 3 Si 0.89 20.99 29.55 -169.99 -5.02 15.96 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 6 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.51 -13.57 7.62 -34.44 -0.26 -13.83 16 8 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 9 C 0.22 5.40 1.15 -69.51 -0.08 5.32 16 10 H 0.03 0.76 6.99 -51.93 -0.36 0.40 16 11 C 0.09 2.14 5.47 -4.50 -0.02 2.11 16 12 N -0.70 -14.33 6.11 -118.27 -0.72 -15.05 16 13 C 0.09 1.55 6.03 -6.55 -0.04 1.51 16 14 C -0.15 -2.60 5.62 -27.06 -0.15 -2.76 16 15 C 0.05 0.89 4.99 -4.31 -0.02 0.87 16 16 N -0.53 -11.37 4.42 -230.52 -1.02 -12.39 16 17 C 0.10 1.99 4.93 -4.97 -0.02 1.97 16 18 C -0.06 -0.99 4.87 -104.62 -0.51 -1.50 16 19 C -0.12 -1.78 7.74 -39.58 -0.31 -2.08 16 20 C -0.13 -1.66 10.05 -39.58 -0.40 -2.06 16 21 C -0.13 -1.70 10.05 -39.58 -0.40 -2.10 16 22 C -0.12 -1.71 10.05 -39.59 -0.40 -2.11 16 23 C -0.10 -1.59 9.70 -39.58 -0.38 -1.97 16 24 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 25 H 0.01 0.29 6.77 -51.93 -0.35 -0.06 16 26 H 0.08 2.15 6.71 -51.93 -0.35 1.81 16 27 H 0.33 6.20 8.85 -39.29 -0.35 5.85 16 28 H 0.00 0.01 7.60 -51.93 -0.39 -0.39 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.07 1.45 6.67 -51.93 -0.35 1.11 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.06 1.07 4.65 -51.93 -0.24 0.83 16 33 H 0.06 1.08 6.52 -51.93 -0.34 0.74 16 34 H 0.09 1.95 7.19 -51.93 -0.37 1.58 16 35 H 0.03 0.54 7.59 -51.93 -0.39 0.14 16 36 H 0.12 1.63 7.67 -52.49 -0.40 1.22 16 37 H 0.11 1.21 8.06 -52.49 -0.42 0.79 16 38 H 0.11 1.15 8.06 -52.49 -0.42 0.73 16 39 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 40 H 0.12 2.01 8.06 -52.49 -0.42 1.59 16 LS Contribution 308.84 15.07 4.65 4.65 Total: -1.00 -28.09 308.84 -10.49 -38.58 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -5.98 Total: 7.18 kcal Atomic # 6 Polarization: -11.99 SS G_CDS: -3.08 Total: -15.07 kcal Atomic # 7 Polarization: -50.26 SS G_CDS: -1.05 Total: -51.31 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -28.09 -10.49 -38.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000222507083.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.889 kcal (2) G-P(sol) polarization free energy of solvation -28.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds