Wall clock time and date at job start Mon Mar 30 2020 04:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48501 * 109.47056 * 274.99449 * 3 2 1 5 5 H 1.48498 * 109.47023 * 34.99293 * 3 2 1 6 6 H 1.48499 * 109.47338 * 154.99499 * 3 2 1 7 7 C 1.37884 * 119.99738 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99758 * 188.93505 * 7 2 1 9 9 C 1.50698 * 119.99758 * 8.93743 * 7 2 1 10 10 H 1.08995 * 108.97954 * 306.63242 * 9 7 2 11 11 C 1.50782 * 108.99368 * 65.47694 * 9 7 2 12 12 N 1.47686 * 108.09519 * 215.15772 * 11 9 7 13 13 C 1.40087 * 114.57289 * 278.67705 * 12 11 9 14 14 C 1.54516 * 111.50310 * 61.44917 * 13 12 11 15 15 C 1.50750 * 108.95020 * 283.99900 * 14 13 12 16 16 N 1.47754 * 108.92520 * 187.83232 * 9 7 2 17 17 C 1.46906 * 110.99457 * 72.23366 * 16 9 7 18 18 C 1.50700 * 109.46832 * 189.99974 * 17 16 9 19 19 C 1.38239 * 119.99883 * 269.72517 * 18 17 16 20 20 C 1.38231 * 119.99783 * 179.76462 * 19 18 17 21 21 C 1.38241 * 120.00153 * 0.48635 * 20 19 18 22 22 C 1.38231 * 119.99567 * 359.79002 * 21 20 19 23 23 C 1.38234 * 120.00584 * 359.95576 * 22 21 20 24 24 H 0.96996 * 119.99893 * 359.97438 * 1 2 3 25 25 H 1.09005 * 109.73682 * 95.50935 * 11 9 7 26 26 H 1.08991 * 109.73733 * 334.80897 * 11 9 7 27 27 H 1.00896 * 111.00067 * 151.98248 * 12 11 9 28 28 H 1.08999 * 109.07646 * 300.93168 * 13 12 11 29 29 H 1.08994 * 109.07282 * 181.97236 * 13 12 11 30 30 H 1.08999 * 109.56007 * 43.83459 * 14 13 12 31 31 H 1.08997 * 109.56089 * 164.15826 * 14 13 12 32 32 H 1.08998 * 108.78657 * 213.54888 * 15 14 13 33 33 H 1.09002 * 108.78352 * 331.75235 * 15 14 13 34 34 H 1.08999 * 109.46775 * 309.99430 * 17 16 9 35 35 H 1.08999 * 109.47158 * 70.00072 * 17 16 9 36 36 H 1.07996 * 119.99802 * 0.02562 * 19 18 17 37 37 H 1.07998 * 120.00053 * 180.25186 * 20 19 18 38 38 H 1.07996 * 119.99504 * 179.76828 * 21 20 19 39 39 H 1.08001 * 119.99649 * 179.97438 * 22 21 20 40 40 H 1.07997 * 120.00376 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3911 2.1073 -1.3948 5 1 1.5034 2.6198 0.8029 6 1 3.5955 1.4119 0.5918 7 6 2.0045 -1.1941 0.0005 8 1 3.0746 -1.1998 0.1458 9 6 1.2646 -2.4913 -0.2016 10 1 0.4499 -2.5509 0.5200 11 6 0.6888 -2.5159 -1.5950 12 7 -0.6096 -3.2177 -1.5425 13 6 -0.5172 -4.6154 -1.5542 14 6 0.2599 -5.1419 -0.3268 15 6 1.7327 -4.9010 -0.5395 16 7 2.1955 -3.6151 0.0301 17 6 2.5074 -3.7541 1.4589 18 6 3.6358 -4.7376 1.6333 19 6 3.3611 -6.0815 1.8049 20 6 4.3963 -6.9843 1.9600 21 6 5.7060 -6.5419 1.9535 22 6 5.9805 -5.1973 1.7876 23 6 4.9455 -4.2952 1.6272 24 1 -0.4850 0.8400 0.0004 25 1 1.3668 -3.0457 -2.2642 26 1 0.5420 -1.4961 -1.9506 27 1 -1.2273 -2.8901 -2.2699 28 1 -0.0041 -4.9310 -2.4626 29 1 -1.5215 -5.0388 -1.5484 30 1 -0.0705 -4.6145 0.5681 31 1 0.0780 -6.2103 -0.2105 32 1 2.2920 -5.7127 -0.0743 33 1 1.9379 -4.9050 -1.6101 34 1 2.8039 -2.7858 1.8619 35 1 1.6262 -4.1143 1.9898 36 1 2.3378 -6.4266 1.8136 37 1 4.1818 -8.0347 2.0900 38 1 6.5146 -7.2468 2.0784 39 1 7.0037 -4.8516 1.7829 40 1 5.1599 -3.2447 1.4972 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000222507083.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:04 Heat of formation + Delta-G solvation = 24.139231 kcal Electronic energy + Delta-G solvation = -20121.894459 eV Core-core repulsion = 17321.723727 eV Total energy + Delta-G solvation = -2800.170732 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.71132 -39.49998 -36.19476 -35.12840 -32.55606 -32.31922 -31.67310 -28.84668 -27.69580 -25.35519 -25.12713 -23.32253 -22.29089 -21.45999 -20.35351 -18.55420 -17.55845 -17.40102 -16.82810 -16.28800 -16.10200 -15.90338 -15.64139 -15.19094 -14.77257 -14.29197 -14.13613 -13.94982 -13.52111 -13.37330 -13.10618 -12.90886 -12.78549 -12.69852 -12.65590 -12.11969 -12.07519 -11.78161 -11.63379 -11.48338 -11.38070 -10.91662 -10.48266 -9.70280 -9.56118 -9.02164 -8.77704 -8.03465 -6.14581 0.52860 0.58843 1.41941 1.43886 1.53642 2.45362 2.90998 3.20048 3.50200 3.58005 3.96526 4.00048 4.06078 4.18109 4.25137 4.35149 4.38920 4.48212 4.66095 4.70457 4.72455 4.84270 4.89316 4.91100 4.95401 4.96930 5.09701 5.21315 5.25367 5.36266 5.37531 5.64986 5.68468 5.69247 5.79273 5.89241 6.20921 6.33442 6.40294 6.49889 6.82462 6.90515 7.04532 7.52875 9.00367 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.017567 B = 0.007450 C = 0.005500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.522776 B = 3757.427094 C = 5089.308612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.019 3.981 3 Si 0.948 3.052 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.523 4.523 8 H 0.049 0.951 9 C 0.235 3.765 10 H -0.016 1.016 11 C 0.107 3.893 12 N -0.710 5.710 13 C 0.083 3.917 14 C -0.142 4.142 15 C 0.050 3.950 16 N -0.544 5.544 17 C 0.111 3.889 18 C -0.080 4.080 19 C -0.125 4.125 20 C -0.121 4.121 21 C -0.126 4.126 22 C -0.124 4.124 23 C -0.121 4.121 24 H 0.259 0.741 25 H 0.014 0.986 26 H 0.054 0.946 27 H 0.341 0.659 28 H 0.013 0.987 29 H 0.078 0.922 30 H 0.042 0.958 31 H 0.092 0.908 32 H 0.081 0.919 33 H 0.051 0.949 34 H 0.059 0.941 35 H 0.019 0.981 36 H 0.123 0.877 37 H 0.147 0.853 38 H 0.149 0.851 39 H 0.139 0.861 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.065 -13.627 0.923 14.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.181 4.181 3 Si 0.774 3.226 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.562 4.562 8 H 0.067 0.933 9 C 0.128 3.872 10 H 0.001 0.999 11 C -0.022 4.022 12 N -0.343 5.343 13 C -0.047 4.047 14 C -0.182 4.182 15 C -0.078 4.078 16 N -0.269 5.269 17 C -0.016 4.016 18 C -0.081 4.081 19 C -0.144 4.144 20 C -0.139 4.139 21 C -0.144 4.144 22 C -0.142 4.142 23 C -0.139 4.139 24 H 0.068 0.932 25 H 0.032 0.968 26 H 0.073 0.927 27 H 0.161 0.839 28 H 0.030 0.970 29 H 0.097 0.903 30 H 0.061 0.939 31 H 0.111 0.889 32 H 0.100 0.900 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.037 0.963 36 H 0.141 0.859 37 H 0.165 0.835 38 H 0.167 0.833 39 H 0.157 0.843 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 6.305 -13.376 1.327 14.847 hybrid contribution -0.508 1.193 -0.508 1.392 sum 5.797 -12.183 0.819 13.517 Atomic orbital electron populations 1.70183 1.06787 1.26858 1.50334 1.25606 0.95502 1.01758 0.95215 0.85712 0.78819 0.80087 0.77999 1.20211 1.21200 1.19700 1.21376 0.93889 0.91462 1.49446 0.93298 1.18744 0.88718 0.87129 0.92612 0.99861 1.21516 0.87104 0.96137 0.97439 1.57331 1.15379 1.06629 1.54922 1.20869 1.00056 0.88025 0.95786 1.22027 0.96633 1.01235 0.98279 1.22060 0.94088 0.92049 0.99565 1.62147 1.47041 1.04350 1.13361 1.20706 0.94086 0.97255 0.89602 1.19906 0.94490 0.94557 0.99104 1.21170 1.00014 0.92325 1.00880 1.21409 0.92536 1.00288 0.99657 1.21459 0.97365 0.95694 0.99891 1.21386 0.99254 0.93779 0.99795 1.21140 0.92690 1.00041 1.00050 0.93234 0.96783 0.92745 0.83936 0.96960 0.90327 0.93898 0.88934 0.90031 0.93040 0.92269 0.96329 0.85934 0.83491 0.83320 0.84297 0.87406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.37 12.49 21.45 0.27 -52.10 16 2 C 0.02 1.08 4.85 84.66 0.41 1.49 16 3 Si 0.95 44.24 29.55 68.60 2.03 46.27 16 4 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 5 H -0.29 -13.16 7.11 99.48 0.71 -12.46 16 6 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 7 C -0.52 -29.25 7.62 25.60 0.20 -29.06 16 8 H 0.05 2.79 7.81 -2.91 -0.02 2.77 16 9 C 0.23 12.02 1.15 43.28 0.05 12.07 16 10 H -0.02 -0.96 6.99 -2.39 -0.02 -0.98 16 11 C 0.11 5.09 5.47 85.43 0.47 5.56 16 12 N -0.71 -29.28 6.11 -528.10 -3.23 -32.51 16 13 C 0.08 2.82 6.03 88.05 0.53 3.35 16 14 C -0.14 -4.84 5.62 30.38 0.17 -4.67 16 15 C 0.05 1.83 4.99 85.35 0.43 2.25 16 16 N -0.54 -23.98 4.42 -883.23 -3.91 -27.89 16 17 C 0.11 4.61 4.93 85.56 0.42 5.03 16 18 C -0.08 -2.73 4.87 -19.86 -0.10 -2.82 16 19 C -0.13 -3.51 7.74 22.27 0.17 -3.34 16 20 C -0.12 -2.71 10.05 22.27 0.22 -2.49 16 21 C -0.13 -2.71 10.05 22.27 0.22 -2.48 16 22 C -0.12 -3.13 10.05 22.27 0.22 -2.91 16 23 C -0.12 -3.89 9.70 22.27 0.22 -3.67 16 24 H 0.26 14.34 8.31 -92.71 -0.77 13.56 16 25 H 0.01 0.66 6.77 -2.38 -0.02 0.64 16 26 H 0.05 2.89 6.71 -2.39 -0.02 2.88 16 27 H 0.34 12.74 8.85 -89.70 -0.79 11.95 16 28 H 0.01 0.40 7.60 -2.39 -0.02 0.39 16 29 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 30 H 0.04 1.73 6.67 -2.39 -0.02 1.72 16 31 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 32 H 0.08 2.66 4.65 -2.39 -0.01 2.65 16 33 H 0.05 1.93 6.52 -2.39 -0.02 1.91 16 34 H 0.06 2.75 7.19 -2.39 -0.02 2.74 16 35 H 0.02 0.78 7.59 -2.39 -0.02 0.76 16 36 H 0.12 3.20 7.67 -2.91 -0.02 3.18 16 37 H 0.15 2.35 8.06 -2.91 -0.02 2.32 16 38 H 0.15 2.18 8.06 -2.91 -0.02 2.16 16 39 H 0.14 2.79 8.06 -2.91 -0.02 2.76 16 40 H 0.11 3.71 8.06 -2.91 -0.02 3.68 16 Total: -1.00 -63.27 308.84 -0.97 -64.24 By element: Atomic # 1 Polarization: 23.44 SS G_CDS: 0.23 Total: 23.67 kcal Atomic # 6 Polarization: -25.32 SS G_CDS: 3.63 Total: -21.68 kcal Atomic # 7 Polarization: -105.63 SS G_CDS: -6.87 Total: -112.50 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -63.27 -0.97 -64.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000222507083.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.380 kcal (2) G-P(sol) polarization free energy of solvation -63.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds