Wall clock time and date at job start Mon Mar 30 2020 04:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.51014 * 2 1 4 4 C 1.53053 * 109.48746 * 239.94488 * 2 1 3 5 5 N 1.46959 * 109.36396 * 298.43820 * 4 2 1 6 6 C 1.46904 * 111.00007 * 176.81123 * 5 4 2 7 7 C 1.50703 * 109.46950 * 189.99658 * 6 5 4 8 8 C 1.38229 * 119.99552 * 269.72288 * 7 6 5 9 9 C 1.38241 * 119.99361 * 179.76695 * 8 7 6 10 10 C 1.38229 * 120.00145 * 0.48588 * 9 8 7 11 11 C 1.38234 * 120.00213 * 359.79199 * 10 9 8 12 12 C 1.38229 * 119.99765 * 90.00122 * 7 6 5 13 13 C 1.46955 * 110.87690 * 300.67431 * 5 4 2 14 14 C 1.53051 * 109.36422 * 59.32144 * 13 5 4 15 15 H 1.09005 * 109.48877 * 61.56815 * 14 13 5 16 16 C 1.50697 * 109.48871 * 181.62549 * 14 13 5 17 17 H 1.07999 * 120.00159 * 359.89681 * 16 14 13 18 18 C 1.37878 * 119.99929 * 179.88933 * 16 14 13 19 19 N 1.31517 * 120.00083 * 180.02562 * 18 16 14 20 20 Si 1.86803 * 120.00116 * 0.02562 * 18 16 14 21 21 H 1.48500 * 109.46981 * 89.99557 * 20 18 16 22 22 H 1.48500 * 109.47185 * 209.99464 * 20 18 16 23 23 H 1.48497 * 109.46785 * 329.99873 * 20 18 16 24 24 N 1.46955 * 109.49212 * 120.05539 * 2 1 3 25 25 H 1.09003 * 109.46841 * 299.94427 * 1 2 3 26 26 H 1.09000 * 109.47169 * 59.94320 * 1 2 3 27 27 H 1.08996 * 109.47311 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.48743 * 58.40196 * 4 2 1 29 29 H 1.08995 * 109.49286 * 178.46384 * 4 2 1 30 30 H 1.09004 * 109.46751 * 309.99953 * 6 5 4 31 31 H 1.09001 * 109.47101 * 69.99342 * 6 5 4 32 32 H 1.07999 * 120.00611 * 0.02562 * 8 7 6 33 33 H 1.08004 * 119.99822 * 180.25116 * 9 8 7 34 34 H 1.08006 * 120.00359 * 179.76836 * 10 9 8 35 35 H 1.07997 * 120.00719 * 179.97438 * 11 10 9 36 36 H 1.08000 * 120.00668 * 359.97438 * 12 7 6 37 37 H 1.09001 * 109.48648 * 179.28882 * 13 5 4 38 38 H 1.09001 * 109.49302 * 299.33392 * 13 5 4 39 39 H 0.96998 * 120.00286 * 180.02562 * 19 18 16 40 40 H 1.00901 * 111.00068 * 184.50843 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0406 -0.7226 -1.2489 5 7 1.5807 -2.1182 -1.2265 6 6 1.9875 -2.8262 -2.4477 7 6 1.2984 -4.1652 -2.5053 8 6 1.8994 -5.2765 -1.9444 9 6 1.2650 -6.5037 -1.9930 10 6 0.0343 -6.6216 -2.6112 11 6 -0.5641 -5.5114 -3.1771 12 6 0.0679 -4.2831 -3.1239 13 6 2.0711 -2.8121 -0.0274 14 6 1.5606 -2.0894 1.2214 15 1 0.4709 -2.1132 1.2354 16 6 2.0945 -2.7751 2.4526 17 1 2.7327 -3.6408 2.3546 18 6 1.7684 -2.2971 3.7040 19 7 2.2348 -2.8951 4.7785 20 14 0.6642 -0.7999 3.8735 21 1 -0.7536 -1.2360 3.9432 22 1 1.0168 -0.0626 5.1133 23 1 0.8516 0.0888 2.6987 24 7 2.0204 -0.6938 1.1991 25 1 -0.3633 0.5130 0.8905 26 1 -0.3633 0.5147 -0.8895 27 1 -0.3634 -1.0276 -0.0005 28 1 1.6543 -0.2267 -2.1394 29 1 3.1302 -0.6989 -1.2628 30 1 1.7079 -2.2357 -3.3202 31 1 3.0675 -2.9734 -2.4397 32 1 2.8627 -5.1851 -1.4646 33 1 1.7328 -7.3712 -1.5513 34 1 -0.4597 -7.5812 -2.6525 35 1 -1.5255 -5.6035 -3.6605 36 1 -0.3999 -3.4157 -3.5657 37 1 1.7070 -3.8395 -0.0274 38 1 3.1611 -2.8125 -0.0276 39 1 2.0051 -2.5591 5.6590 40 1 3.0263 -0.6435 1.2600 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251686278.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:52 Heat of formation + Delta-G solvation = 23.201944 kcal Electronic energy + Delta-G solvation = -20072.789304 eV Core-core repulsion = 17272.577928 eV Total energy + Delta-G solvation = -2800.211376 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.82870 -39.65014 -36.00388 -34.76083 -32.67780 -32.09097 -31.72441 -28.70874 -27.38038 -27.19040 -24.02117 -23.49121 -22.75843 -21.82573 -20.00151 -18.95637 -17.61393 -17.14198 -16.42275 -16.30901 -16.02881 -15.77786 -15.37574 -15.24580 -15.06148 -14.49444 -14.25361 -14.18331 -13.75758 -13.34961 -13.25641 -12.96019 -12.80256 -12.60164 -12.35144 -12.15620 -11.96114 -11.84783 -11.81492 -11.54564 -11.33770 -11.12069 -10.67822 -9.76673 -9.66547 -9.24636 -8.57881 -8.23620 -6.35660 0.46366 0.54915 1.51692 1.57475 1.95716 2.62506 2.76957 3.11937 3.24891 3.73993 3.84952 3.96509 4.18468 4.22391 4.23880 4.27824 4.32420 4.44605 4.49347 4.54218 4.63843 4.72595 4.80066 4.82908 4.85573 4.98447 5.12177 5.14964 5.19028 5.27440 5.32354 5.54428 5.59965 5.65204 5.68459 5.74599 6.07351 6.11424 6.16892 6.27274 6.47829 6.81572 6.90649 7.42504 8.89738 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.020856 B = 0.006810 C = 0.005823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.228946 B = 4110.770795 C = 4807.404525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.076 3.924 3 H 0.096 0.904 4 C 0.029 3.971 5 N -0.530 5.530 6 C 0.095 3.905 7 C -0.087 4.087 8 C -0.130 4.130 9 C -0.135 4.135 10 C -0.128 4.128 11 C -0.127 4.127 12 C -0.108 4.108 13 C 0.055 3.945 14 C 0.202 3.798 15 H 0.037 0.963 16 C -0.526 4.526 17 H 0.024 0.976 18 C 0.029 3.971 19 N -0.952 5.952 20 Si 0.920 3.080 21 H -0.305 1.305 22 H -0.317 1.317 23 H -0.145 1.145 24 N -0.682 5.682 25 H 0.043 0.957 26 H 0.074 0.926 27 H 0.046 0.954 28 H 0.099 0.901 29 H 0.026 0.974 30 H 0.102 0.898 31 H 0.032 0.968 32 H 0.105 0.895 33 H 0.129 0.871 34 H 0.142 0.858 35 H 0.146 0.854 36 H 0.136 0.864 37 H 0.058 0.942 38 H 0.008 0.992 39 H 0.261 0.739 40 H 0.330 0.670 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.047 1.691 -19.573 20.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.034 4.034 3 H 0.114 0.886 4 C -0.100 4.100 5 N -0.254 5.254 6 C -0.032 4.032 7 C -0.088 4.088 8 C -0.149 4.149 9 C -0.153 4.153 10 C -0.146 4.146 11 C -0.145 4.145 12 C -0.126 4.126 13 C -0.075 4.075 14 C 0.094 3.906 15 H 0.054 0.946 16 C -0.564 4.564 17 H 0.042 0.958 18 C -0.170 4.170 19 N -0.592 5.592 20 Si 0.746 3.254 21 H -0.233 1.233 22 H -0.245 1.245 23 H -0.065 1.065 24 N -0.313 5.313 25 H 0.062 0.938 26 H 0.093 0.907 27 H 0.065 0.935 28 H 0.117 0.883 29 H 0.045 0.955 30 H 0.120 0.880 31 H 0.050 0.950 32 H 0.124 0.876 33 H 0.147 0.853 34 H 0.160 0.840 35 H 0.163 0.837 36 H 0.154 0.846 37 H 0.076 0.924 38 H 0.027 0.973 39 H 0.070 0.930 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -5.042 1.961 -19.017 19.771 hybrid contribution 1.490 -0.613 0.475 1.680 sum -3.552 1.348 -18.542 18.927 Atomic orbital electron populations 1.21709 0.94382 1.01657 1.01147 1.21798 0.96605 0.97634 0.87326 0.88598 1.22882 0.97217 0.88834 1.01041 1.62172 1.59721 1.02252 1.01247 1.21086 0.96360 0.92150 0.93556 1.19867 0.96098 0.94408 0.98381 1.21183 1.00333 0.93665 0.99719 1.21356 0.96466 0.97533 0.99902 1.21445 0.95256 0.99932 0.98003 1.21473 1.00643 0.92509 0.99826 1.21224 0.93994 0.98367 0.99015 1.22502 0.95389 0.98488 0.91112 1.19204 0.95727 0.85006 0.90682 0.94552 1.21146 1.31355 1.12895 0.91038 0.95758 1.25859 0.96505 0.99742 0.94870 1.70107 1.47208 1.43216 0.98686 0.86484 0.76130 0.82698 0.80115 1.23283 1.24513 1.06545 1.61514 1.15830 1.16077 1.37899 0.93783 0.90670 0.93537 0.88276 0.95531 0.87985 0.94987 0.87647 0.85288 0.84013 0.83655 0.84567 0.92402 0.97334 0.93032 0.85183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.93 8.70 71.98 0.63 -3.31 16 2 C 0.08 2.30 3.68 44.92 0.17 2.47 16 3 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 4 C 0.03 0.80 5.03 86.31 0.43 1.23 16 5 N -0.53 -16.59 4.02 -900.25 -3.62 -20.21 16 6 C 0.10 2.53 5.12 85.56 0.44 2.96 16 7 C -0.09 -2.42 4.88 -19.87 -0.10 -2.52 16 8 C -0.13 -3.86 7.93 22.27 0.18 -3.68 16 9 C -0.13 -3.56 10.05 22.27 0.22 -3.34 16 10 C -0.13 -2.94 10.05 22.27 0.22 -2.71 16 11 C -0.13 -2.78 10.05 22.27 0.22 -2.56 16 12 C -0.11 -2.61 9.70 22.27 0.22 -2.39 16 13 C 0.05 2.20 4.48 86.31 0.39 2.58 16 14 C 0.20 9.25 1.57 44.17 0.07 9.32 16 15 H 0.04 1.78 5.78 -2.38 -0.01 1.77 16 16 C -0.53 -30.26 9.27 25.60 0.24 -30.02 16 17 H 0.02 1.56 7.99 -2.91 -0.02 1.54 16 18 C 0.03 1.71 5.47 84.65 0.46 2.17 16 19 N -0.95 -61.47 13.96 21.45 0.30 -61.17 16 20 Si 0.92 45.32 26.94 68.60 1.85 47.17 16 21 H -0.30 -15.36 7.11 99.48 0.71 -14.65 16 22 H -0.32 -16.06 7.11 99.48 0.71 -15.35 16 23 H -0.15 -6.24 4.36 99.48 0.43 -5.81 16 24 N -0.68 -26.89 2.97 -472.88 -1.41 -28.29 16 25 H 0.04 1.38 7.50 -2.39 -0.02 1.36 16 26 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.05 1.61 5.94 -2.39 -0.01 1.60 16 28 H 0.10 2.10 8.07 -2.38 -0.02 2.09 16 29 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.10 2.15 7.97 -2.39 -0.02 2.14 16 31 H 0.03 0.87 8.06 -2.39 -0.02 0.85 16 32 H 0.11 3.26 8.01 -2.91 -0.02 3.23 16 33 H 0.13 3.00 8.06 -2.91 -0.02 2.98 16 34 H 0.14 2.46 8.06 -2.91 -0.02 2.43 16 35 H 0.15 2.33 8.06 -2.91 -0.02 2.30 16 36 H 0.14 2.75 8.06 -2.91 -0.02 2.73 16 37 H 0.06 2.50 5.97 -2.39 -0.01 2.49 16 38 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 39 H 0.26 16.01 8.31 -92.71 -0.77 15.24 16 40 H 0.33 13.14 8.79 -89.69 -0.79 12.36 16 Total: -1.00 -68.64 309.63 0.87 -67.78 By element: Atomic # 1 Polarization: 24.56 SS G_CDS: -0.05 Total: 24.51 kcal Atomic # 6 Polarization: -33.58 SS G_CDS: 3.79 Total: -29.79 kcal Atomic # 7 Polarization: -104.95 SS G_CDS: -4.72 Total: -109.67 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 1.85 Total: 47.17 kcal Total: -68.64 0.87 -67.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251686278.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.979 kcal (2) G-P(sol) polarization free energy of solvation -68.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds