Wall clock time and date at job start Mon Mar 30 2020 04:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46907 * 111.00035 * 2 1 4 4 H 1.09003 * 110.28061 * 35.67813 * 3 2 1 5 5 C 1.54259 * 110.32398 * 273.55351 * 3 2 1 6 6 C 1.54379 * 105.05539 * 241.10267 * 5 3 2 7 7 N 1.48560 * 104.70125 * 336.08309 * 6 5 3 8 8 C 1.46895 * 111.00237 * 159.10080 * 7 6 5 9 9 H 1.09000 * 109.47299 * 299.87698 * 8 7 6 10 10 C 1.50703 * 109.47353 * 179.87748 * 8 7 6 11 11 H 1.08002 * 119.99847 * 324.77655 * 10 8 7 12 12 C 1.37879 * 120.00047 * 144.77366 * 10 8 7 13 13 N 1.31512 * 120.00087 * 5.11357 * 12 10 8 14 14 Si 1.86803 * 120.00157 * 185.11320 * 12 10 8 15 15 H 1.48501 * 109.46710 * 359.97438 * 14 12 10 16 16 H 1.48492 * 109.47170 * 119.99825 * 14 12 10 17 17 H 1.48495 * 109.47011 * 240.00256 * 14 12 10 18 18 C 1.50703 * 109.47176 * 59.87911 * 8 7 6 19 19 C 1.38234 * 119.99717 * 45.83096 * 18 8 7 20 20 C 1.38235 * 119.99670 * 179.77144 * 19 18 8 21 21 C 1.38245 * 120.00038 * 0.50380 * 20 19 18 22 22 C 1.38229 * 119.99820 * 359.74913 * 21 20 19 23 23 C 1.38239 * 120.00417 * 359.97438 * 22 21 20 24 24 C 1.48854 * 104.07133 * 39.47544 * 7 6 5 25 25 H 1.08995 * 109.47517 * 59.99779 * 1 2 3 26 26 H 1.09004 * 109.46889 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47225 * 299.99276 * 1 2 3 28 28 H 1.00894 * 111.00522 * 123.95742 * 2 1 3 29 29 H 1.08993 * 110.32581 * 122.20833 * 5 3 2 30 30 H 1.08999 * 110.41260 * 0.03571 * 5 3 2 31 31 H 1.08998 * 110.41921 * 94.92814 * 6 5 3 32 32 H 1.09009 * 110.40961 * 217.24913 * 6 5 3 33 33 H 0.96996 * 120.00259 * 180.02562 * 13 12 10 34 34 H 1.07996 * 119.99997 * 359.97438 * 19 18 8 35 35 H 1.08000 * 120.00337 * 180.22667 * 20 19 18 36 36 H 1.08003 * 119.99601 * 179.73003 * 21 20 19 37 37 H 1.07999 * 120.00105 * 179.97438 * 22 21 20 38 38 H 1.07993 * 120.00251 * 179.97438 * 23 22 21 39 39 H 1.09005 * 110.38965 * 201.75254 * 24 7 6 40 40 H 1.09002 * 110.39953 * 79.33849 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 1 1.3554 2.0219 0.5963 5 6 2.1037 1.9038 -1.4438 6 6 3.6046 2.2005 -1.6502 7 7 4.1385 2.4147 -0.2805 8 6 5.5939 2.2190 -0.2462 9 1 5.8312 1.2015 -0.5566 10 6 6.0986 2.4472 1.1554 11 1 5.6398 3.2005 1.7786 12 6 7.1460 1.6940 1.6421 13 7 7.7702 0.8478 0.8523 14 14 7.6784 1.8757 3.4234 15 1 6.8222 2.8860 4.0953 16 1 7.5410 0.5698 4.1167 17 1 9.0956 2.3163 3.4739 18 6 6.2545 3.1971 -1.1833 19 6 5.8717 4.5253 -1.1783 20 6 6.4810 5.4234 -2.0346 21 6 7.4658 4.9911 -2.9032 22 6 7.8448 3.6618 -2.9118 23 6 7.2396 2.7648 -2.0515 24 6 3.4398 1.3913 0.5443 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.8306 -0.5261 0.7813 29 1 1.5185 2.8165 -1.5557 30 1 1.7660 1.1488 -2.1537 31 1 4.0986 1.3513 -2.1223 32 1 3.7350 3.0988 -2.2538 33 1 8.5067 0.3177 1.1948 34 1 5.0990 4.8621 -0.5031 35 1 6.1846 6.4619 -2.0282 36 1 7.9387 5.6919 -3.5752 37 1 8.6138 3.3240 -3.5907 38 1 7.5355 1.7262 -2.0586 39 1 3.4462 1.6815 1.5950 40 1 3.9081 0.4154 0.4158 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252691617.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:23 Heat of formation + Delta-G solvation = 33.956507 kcal Electronic energy + Delta-G solvation = -19868.686619 eV Core-core repulsion = 17068.941596 eV Total energy + Delta-G solvation = -2799.745023 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.91649 -37.77360 -35.04578 -33.00336 -31.08102 -29.92376 -29.05193 -27.87131 -26.09762 -24.24536 -22.89300 -21.62277 -20.92988 -19.78724 -19.23161 -16.50877 -16.13323 -15.54495 -15.41453 -14.83492 -14.37686 -14.17667 -13.70899 -13.47040 -13.18795 -12.95387 -12.49045 -12.37995 -11.95912 -11.80496 -11.70286 -11.42500 -11.21219 -11.00532 -10.81368 -10.65172 -10.53507 -10.29646 -10.15495 -10.01551 -9.74757 -9.33221 -8.59494 -8.28510 -7.97024 -7.60436 -7.37188 -6.13206 -4.16433 2.36466 2.39025 3.24293 3.32903 3.37238 4.32101 4.38209 4.77955 5.12438 5.19582 5.25872 5.34624 5.46404 5.55791 5.61169 5.71391 5.83194 5.88432 5.91592 5.92267 6.19686 6.30564 6.35457 6.46118 6.48818 6.52092 6.59669 6.63399 6.73212 6.94824 6.99532 7.22861 7.28752 7.38820 7.41740 7.53858 7.72473 7.76557 7.81849 8.06125 8.14613 8.45001 8.96012 9.47890 10.93622 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.013414 B = 0.008539 C = 0.005783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.920865 B = 3278.446610 C = 4840.525580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.689 5.689 3 C 0.076 3.924 4 H 0.047 0.953 5 C -0.111 4.111 6 C 0.033 3.967 7 N -0.502 5.502 8 C 0.226 3.774 9 H 0.041 0.959 10 C -0.496 4.496 11 H 0.064 0.936 12 C 0.065 3.935 13 N -0.884 5.884 14 Si 0.895 3.105 15 H -0.271 1.271 16 H -0.283 1.283 17 H -0.284 1.284 18 C -0.022 4.022 19 C -0.105 4.105 20 C -0.136 4.136 21 C -0.153 4.153 22 C -0.132 4.132 23 C -0.112 4.112 24 C 0.055 3.945 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.018 0.982 28 H 0.342 0.658 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.034 0.966 32 H 0.069 0.931 33 H 0.262 0.738 34 H 0.118 0.882 35 H 0.105 0.895 36 H 0.103 0.897 37 H 0.105 0.895 38 H 0.117 0.883 39 H 0.076 0.924 40 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.412 1.347 -3.891 9.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.321 5.321 3 C -0.034 4.034 4 H 0.065 0.935 5 C -0.150 4.150 6 C -0.095 4.095 7 N -0.227 5.227 8 C 0.119 3.881 9 H 0.059 0.941 10 C -0.534 4.534 11 H 0.083 0.917 12 C -0.138 4.138 13 N -0.521 5.521 14 Si 0.722 3.278 15 H -0.195 1.195 16 H -0.209 1.209 17 H -0.210 1.210 18 C -0.023 4.023 19 C -0.123 4.123 20 C -0.155 4.155 21 C -0.171 4.171 22 C -0.150 4.150 23 C -0.131 4.131 24 C -0.074 4.074 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.037 0.963 28 H 0.160 0.840 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.053 0.947 32 H 0.087 0.913 33 H 0.072 0.928 34 H 0.136 0.864 35 H 0.123 0.877 36 H 0.121 0.879 37 H 0.123 0.877 38 H 0.135 0.865 39 H 0.094 0.906 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -8.299 1.683 -4.371 9.529 hybrid contribution 0.610 -0.465 1.590 1.765 sum -7.689 1.218 -2.781 8.266 Atomic orbital electron populations 1.22185 0.88518 1.01210 1.00103 1.60558 1.07111 1.14512 1.49902 1.22412 0.96332 0.87971 0.96671 0.93487 1.22320 0.96906 0.99657 0.96093 1.22995 0.93534 0.99535 0.93468 1.65565 1.07506 1.44888 1.04750 1.18643 0.81768 0.93505 0.94144 0.94102 1.20959 1.16205 1.19767 0.96500 0.91746 1.25002 0.96098 0.94868 0.97848 1.69936 1.21897 1.25097 1.35176 0.86483 0.78556 0.77950 0.84771 1.19550 1.20945 1.20993 1.20432 0.94828 0.95205 0.91817 1.20960 0.99842 0.93168 0.98323 1.20988 0.97988 0.98634 0.97842 1.20800 0.99793 0.95676 1.00878 1.20954 1.00245 0.93783 0.99992 1.21076 0.96989 0.99680 0.95374 1.22928 0.90567 0.95316 0.98555 0.91984 0.91923 0.96316 0.84026 0.92254 0.91272 0.94722 0.91299 0.92776 0.86356 0.87721 0.87877 0.87694 0.86522 0.90576 0.93352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.54 60.06 0.63 0.97 16 2 N -0.69 -9.73 6.54 -112.54 -0.74 -10.47 16 3 C 0.08 1.20 3.38 -66.33 -0.22 0.98 16 4 H 0.05 0.73 7.86 -51.93 -0.41 0.32 16 5 C -0.11 -1.75 6.69 -25.35 -0.17 -1.92 16 6 C 0.03 0.62 5.64 -2.18 -0.01 0.61 16 7 N -0.50 -10.50 4.68 -224.54 -1.05 -11.55 16 8 C 0.23 5.43 1.52 -70.02 -0.11 5.32 16 9 H 0.04 1.11 7.01 -51.93 -0.36 0.75 16 10 C -0.50 -13.04 7.74 -34.44 -0.27 -13.31 16 11 H 0.06 1.73 7.82 -52.49 -0.41 1.32 16 12 C 0.07 1.75 5.45 -17.82 -0.10 1.65 16 13 N -0.88 -24.41 12.84 55.43 0.71 -23.70 16 14 Si 0.89 20.90 29.54 -169.99 -5.02 15.88 16 15 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 16 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 18 C -0.02 -0.49 3.96 -104.62 -0.41 -0.91 16 19 C -0.10 -2.20 8.80 -39.58 -0.35 -2.55 16 20 C -0.14 -2.54 10.05 -39.58 -0.40 -2.94 16 21 C -0.15 -2.77 10.05 -39.58 -0.40 -3.16 16 22 C -0.13 -2.54 10.05 -39.58 -0.40 -2.94 16 23 C -0.11 -2.49 9.67 -39.58 -0.38 -2.87 16 24 C 0.06 1.06 5.31 -2.02 -0.01 1.05 16 25 H 0.06 0.69 8.11 -51.93 -0.42 0.27 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.02 0.20 8.07 -51.93 -0.42 -0.22 16 28 H 0.34 4.62 8.49 -39.30 -0.33 4.28 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.07 1.05 7.95 -51.93 -0.41 0.64 16 31 H 0.03 0.69 7.97 -51.93 -0.41 0.27 16 32 H 0.07 1.27 7.62 -51.92 -0.40 0.88 16 33 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 34 H 0.12 2.49 7.90 -52.49 -0.41 2.08 16 35 H 0.10 1.66 8.06 -52.49 -0.42 1.23 16 36 H 0.10 1.56 8.06 -52.48 -0.42 1.13 16 37 H 0.10 1.75 8.06 -52.49 -0.42 1.33 16 38 H 0.12 2.70 7.99 -52.49 -0.42 2.28 16 39 H 0.08 1.51 8.06 -51.93 -0.42 1.09 16 40 H 0.05 1.02 7.78 -51.93 -0.40 0.61 16 LS Contribution 325.16 15.07 4.90 4.90 Total: -1.00 -27.48 325.16 -10.27 -37.75 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -6.48 Total: 7.21 kcal Atomic # 6 Polarization: -17.43 SS G_CDS: -2.59 Total: -20.02 kcal Atomic # 7 Polarization: -44.64 SS G_CDS: -1.08 Total: -45.72 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -27.48 -10.27 -37.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252691617.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.708 kcal (2) G-P(sol) polarization free energy of solvation -27.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds