Wall clock time and date at job start Mon Mar 30 2020 04:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46907 * 111.00035 * 2 1 4 4 H 1.09003 * 110.28061 * 35.67813 * 3 2 1 5 5 C 1.54259 * 110.32398 * 273.55351 * 3 2 1 6 6 C 1.54379 * 105.05539 * 241.10267 * 5 3 2 7 7 N 1.48560 * 104.70125 * 336.08309 * 6 5 3 8 8 C 1.46895 * 111.00237 * 159.10080 * 7 6 5 9 9 H 1.09000 * 109.47299 * 299.87698 * 8 7 6 10 10 C 1.50703 * 109.47353 * 179.87748 * 8 7 6 11 11 H 1.08002 * 119.99847 * 324.77655 * 10 8 7 12 12 C 1.37879 * 120.00047 * 144.77366 * 10 8 7 13 13 N 1.31512 * 120.00087 * 5.11357 * 12 10 8 14 14 Si 1.86803 * 120.00157 * 185.11320 * 12 10 8 15 15 H 1.48501 * 109.46710 * 359.97438 * 14 12 10 16 16 H 1.48492 * 109.47170 * 119.99825 * 14 12 10 17 17 H 1.48495 * 109.47011 * 240.00256 * 14 12 10 18 18 C 1.50703 * 109.47176 * 59.87911 * 8 7 6 19 19 C 1.38234 * 119.99717 * 45.83096 * 18 8 7 20 20 C 1.38235 * 119.99670 * 179.77144 * 19 18 8 21 21 C 1.38245 * 120.00038 * 0.50380 * 20 19 18 22 22 C 1.38229 * 119.99820 * 359.74913 * 21 20 19 23 23 C 1.38239 * 120.00417 * 359.97438 * 22 21 20 24 24 C 1.48854 * 104.07133 * 39.47544 * 7 6 5 25 25 H 1.08995 * 109.47517 * 59.99779 * 1 2 3 26 26 H 1.09004 * 109.46889 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47225 * 299.99276 * 1 2 3 28 28 H 1.00894 * 111.00522 * 123.95742 * 2 1 3 29 29 H 1.08993 * 110.32581 * 122.20833 * 5 3 2 30 30 H 1.08999 * 110.41260 * 0.03571 * 5 3 2 31 31 H 1.08998 * 110.41921 * 94.92814 * 6 5 3 32 32 H 1.09009 * 110.40961 * 217.24913 * 6 5 3 33 33 H 0.96996 * 120.00259 * 180.02562 * 13 12 10 34 34 H 1.07996 * 119.99997 * 359.97438 * 19 18 8 35 35 H 1.08000 * 120.00337 * 180.22667 * 20 19 18 36 36 H 1.08003 * 119.99601 * 179.73003 * 21 20 19 37 37 H 1.07999 * 120.00105 * 179.97438 * 22 21 20 38 38 H 1.07993 * 120.00251 * 179.97438 * 23 22 21 39 39 H 1.09005 * 110.38965 * 201.75254 * 24 7 6 40 40 H 1.09002 * 110.39953 * 79.33849 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 1 1.3554 2.0219 0.5963 5 6 2.1037 1.9038 -1.4438 6 6 3.6046 2.2005 -1.6502 7 7 4.1385 2.4147 -0.2805 8 6 5.5939 2.2190 -0.2462 9 1 5.8312 1.2015 -0.5566 10 6 6.0986 2.4472 1.1554 11 1 5.6398 3.2005 1.7786 12 6 7.1460 1.6940 1.6421 13 7 7.7702 0.8478 0.8523 14 14 7.6784 1.8757 3.4234 15 1 6.8222 2.8860 4.0953 16 1 7.5410 0.5698 4.1167 17 1 9.0956 2.3163 3.4739 18 6 6.2545 3.1971 -1.1833 19 6 5.8717 4.5253 -1.1783 20 6 6.4810 5.4234 -2.0346 21 6 7.4658 4.9911 -2.9032 22 6 7.8448 3.6618 -2.9118 23 6 7.2396 2.7648 -2.0515 24 6 3.4398 1.3913 0.5443 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.8306 -0.5261 0.7813 29 1 1.5185 2.8165 -1.5557 30 1 1.7660 1.1488 -2.1537 31 1 4.0986 1.3513 -2.1223 32 1 3.7350 3.0988 -2.2538 33 1 8.5067 0.3177 1.1948 34 1 5.0990 4.8621 -0.5031 35 1 6.1846 6.4619 -2.0282 36 1 7.9387 5.6919 -3.5752 37 1 8.6138 3.3240 -3.5907 38 1 7.5355 1.7262 -2.0586 39 1 3.4462 1.6815 1.5950 40 1 3.9081 0.4154 0.4158 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252691617.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:23 Heat of formation + Delta-G solvation = 16.694627 kcal Electronic energy + Delta-G solvation = -19869.435150 eV Core-core repulsion = 17068.941596 eV Total energy + Delta-G solvation = -2800.493554 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.50215 -39.25581 -36.47005 -34.78442 -32.76364 -31.50486 -30.58372 -29.25460 -27.96848 -25.45070 -24.57286 -23.20934 -22.48952 -21.34770 -20.73065 -18.48927 -17.58680 -17.07570 -16.95196 -16.39276 -15.86153 -15.77126 -15.21640 -14.85651 -14.76630 -14.36376 -13.98964 -13.95475 -13.52579 -13.40170 -13.28920 -12.93709 -12.78330 -12.65342 -12.42119 -12.14828 -12.00042 -11.90301 -11.73566 -11.61640 -11.52437 -11.16598 -10.61010 -9.55691 -9.40147 -9.27067 -9.12582 -8.16285 -6.26419 0.76373 0.80994 1.36725 1.39012 1.50357 2.37979 3.01286 3.18296 3.28466 3.71026 3.76652 3.93988 4.23390 4.29754 4.33377 4.44940 4.45746 4.53491 4.61496 4.65299 4.78890 4.88057 4.91017 4.98129 4.99435 5.04985 5.11104 5.15488 5.19849 5.29344 5.40934 5.46946 5.67926 5.77050 5.81796 6.01456 6.10084 6.14559 6.27993 6.42907 6.45055 6.62990 6.91232 7.40920 8.89449 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.013414 B = 0.008539 C = 0.005783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.920865 B = 3278.446610 C = 4840.525580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.700 5.700 3 C 0.090 3.910 4 H 0.059 0.941 5 C -0.101 4.101 6 C 0.037 3.963 7 N -0.505 5.505 8 C 0.237 3.763 9 H -0.004 1.004 10 C -0.504 4.504 11 H 0.054 0.946 12 C 0.018 3.982 13 N -0.914 5.914 14 Si 0.954 3.046 15 H -0.266 1.266 16 H -0.278 1.278 17 H -0.284 1.284 18 C -0.046 4.046 19 C -0.117 4.117 20 C -0.129 4.129 21 C -0.143 4.143 22 C -0.131 4.131 23 C -0.138 4.138 24 C 0.056 3.944 25 H 0.066 0.934 26 H 0.078 0.922 27 H 0.027 0.973 28 H 0.343 0.657 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.012 0.988 32 H 0.071 0.929 33 H 0.262 0.738 34 H 0.113 0.887 35 H 0.141 0.859 36 H 0.146 0.854 37 H 0.131 0.869 38 H 0.089 0.911 39 H 0.065 0.935 40 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.417 3.273 -4.496 10.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.332 5.332 3 C -0.021 4.021 4 H 0.077 0.923 5 C -0.139 4.139 6 C -0.091 4.091 7 N -0.229 5.229 8 C 0.130 3.870 9 H 0.013 0.987 10 C -0.542 4.542 11 H 0.072 0.928 12 C -0.182 4.182 13 N -0.552 5.552 14 Si 0.779 3.221 15 H -0.190 1.190 16 H -0.204 1.204 17 H -0.210 1.210 18 C -0.047 4.047 19 C -0.135 4.135 20 C -0.146 4.146 21 C -0.161 4.161 22 C -0.149 4.149 23 C -0.157 4.157 24 C -0.073 4.073 25 H 0.085 0.915 26 H 0.097 0.903 27 H 0.045 0.955 28 H 0.161 0.839 29 H 0.099 0.901 30 H 0.096 0.904 31 H 0.031 0.969 32 H 0.090 0.910 33 H 0.071 0.929 34 H 0.131 0.869 35 H 0.159 0.841 36 H 0.164 0.836 37 H 0.149 0.851 38 H 0.108 0.892 39 H 0.084 0.916 40 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -9.328 3.611 -4.977 11.173 hybrid contribution 0.907 -1.039 1.696 2.186 sum -8.421 2.572 -3.281 9.396 Atomic orbital electron populations 1.22260 0.86350 1.02556 1.00712 1.60556 1.09128 1.13262 1.50242 1.22233 0.93870 0.89421 0.96529 0.92306 1.22284 0.94604 1.00897 0.96126 1.22977 0.95410 0.98738 0.92025 1.65491 1.05889 1.45176 1.06360 1.18326 0.83621 0.91593 0.93486 0.98659 1.21122 1.16090 1.19318 0.97675 0.92781 1.25710 0.96304 0.94797 1.01405 1.70070 1.22439 1.26081 1.36659 0.85570 0.77939 0.78066 0.80508 1.18994 1.20387 1.20965 1.20350 0.95684 0.95906 0.92741 1.20979 1.00466 0.92734 0.99347 1.21381 0.97065 0.99860 0.96331 1.21264 0.98791 0.95516 1.00527 1.21257 1.00191 0.94150 0.99272 1.21029 0.98210 0.99236 0.97246 1.22900 0.92881 0.93466 0.98085 0.91470 0.90306 0.95467 0.83860 0.90127 0.90385 0.96944 0.91033 0.92936 0.86868 0.84082 0.83650 0.85117 0.89230 0.91646 0.96047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 10.54 127.69 1.35 1.97 16 2 N -0.70 -19.11 6.54 -509.96 -3.33 -22.44 16 3 C 0.09 2.78 3.38 45.81 0.15 2.93 16 4 H 0.06 1.71 7.86 -2.39 -0.02 1.69 16 5 C -0.10 -3.04 6.69 31.49 0.21 -2.83 16 6 C 0.04 1.40 5.64 86.45 0.49 1.89 16 7 N -0.51 -21.90 4.68 -864.31 -4.05 -25.95 16 8 C 0.24 12.05 1.52 43.43 0.07 12.11 16 9 H 0.00 -0.26 7.01 -2.39 -0.02 -0.28 16 10 C -0.50 -27.62 7.74 25.60 0.20 -27.43 16 11 H 0.05 3.01 7.82 -2.91 -0.02 2.98 16 12 C 0.02 1.00 5.45 84.66 0.46 1.46 16 13 N -0.91 -53.00 12.84 21.45 0.28 -52.73 16 14 Si 0.95 43.95 29.54 68.60 2.03 45.98 16 15 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 16 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 17 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 18 C -0.05 -2.16 3.96 -19.86 -0.08 -2.24 16 19 C -0.12 -4.87 8.80 22.27 0.20 -4.67 16 20 C -0.13 -4.40 10.05 22.27 0.22 -4.18 16 21 C -0.14 -4.66 10.05 22.27 0.22 -4.43 16 22 C -0.13 -4.86 10.05 22.27 0.22 -4.64 16 23 C -0.14 -6.34 9.67 22.27 0.22 -6.12 16 24 C 0.06 2.23 5.31 86.39 0.46 2.69 16 25 H 0.07 1.31 8.11 -2.39 -0.02 1.29 16 26 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 27 H 0.03 0.52 8.07 -2.39 -0.02 0.50 16 28 H 0.34 9.21 8.49 -89.70 -0.76 8.45 16 29 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 30 H 0.08 2.25 7.95 -2.39 -0.02 2.23 16 31 H 0.01 0.51 7.97 -2.39 -0.02 0.50 16 32 H 0.07 2.65 7.62 -2.38 -0.02 2.63 16 33 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 34 H 0.11 4.74 7.90 -2.91 -0.02 4.72 16 35 H 0.14 3.81 8.06 -2.91 -0.02 3.78 16 36 H 0.15 3.56 8.06 -2.91 -0.02 3.54 16 37 H 0.13 4.09 8.06 -2.91 -0.02 4.07 16 38 H 0.09 4.48 7.99 -2.91 -0.02 4.46 16 39 H 0.07 2.71 8.06 -2.38 -0.02 2.69 16 40 H 0.02 0.96 7.78 -2.39 -0.02 0.94 16 Total: -1.00 -62.09 325.16 -0.45 -62.54 By element: Atomic # 1 Polarization: 25.85 SS G_CDS: 0.24 Total: 26.09 kcal Atomic # 6 Polarization: -37.88 SS G_CDS: 4.39 Total: -33.49 kcal Atomic # 7 Polarization: -94.01 SS G_CDS: -7.11 Total: -101.12 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -62.09 -0.45 -62.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252691617.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.239 kcal (2) G-P(sol) polarization free energy of solvation -62.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds