Wall clock time and date at job start Mon Mar 30 2020 04:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86792 * 120.00135 * 2 1 4 4 H 1.48511 * 109.46917 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47335 * 299.99812 * 3 2 1 6 6 H 1.48496 * 109.47363 * 60.00244 * 3 2 1 7 7 C 1.37878 * 119.99622 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99853 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00413 * 359.97438 * 7 2 1 10 10 C 1.52991 * 109.47293 * 185.09663 * 9 7 2 11 11 H 1.08997 * 109.48948 * 302.49499 * 10 9 7 12 12 C 1.53050 * 109.49089 * 62.56076 * 10 9 7 13 13 N 1.46998 * 109.37759 * 178.36579 * 12 10 9 14 14 C 1.46959 * 110.85935 * 300.69609 * 13 12 10 15 15 C 1.53053 * 109.38007 * 59.30976 * 14 13 12 16 16 N 1.46961 * 109.48773 * 182.45186 * 10 9 7 17 17 C 1.46898 * 110.99919 * 56.84762 * 16 10 9 18 18 C 1.50699 * 109.47117 * 190.12901 * 17 16 10 19 19 C 1.38234 * 120.00023 * 269.72085 * 18 17 16 20 20 C 1.38239 * 120.00006 * 179.80781 * 19 18 17 21 21 C 1.38224 * 120.00008 * 0.40097 * 20 19 18 22 22 C 1.38236 * 120.00427 * 359.85526 * 21 20 19 23 23 C 1.38241 * 119.99955 * 89.99632 * 18 17 16 24 24 H 0.97004 * 119.99683 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.47064 * 65.09384 * 9 7 2 26 26 H 1.09006 * 109.46886 * 305.10164 * 9 7 2 27 27 H 1.08997 * 109.49340 * 298.33852 * 12 10 9 28 28 H 1.09008 * 109.48887 * 58.40368 * 12 10 9 29 29 H 1.00902 * 111.03383 * 176.82619 * 13 12 10 30 30 H 1.08994 * 109.49071 * 299.33197 * 14 13 12 31 31 H 1.08996 * 109.48920 * 179.28317 * 14 13 12 32 32 H 1.08998 * 109.49281 * 61.55282 * 15 14 13 33 33 H 1.09001 * 109.48954 * 181.60378 * 15 14 13 34 34 H 1.09009 * 109.47082 * 310.12335 * 17 16 10 35 35 H 1.08993 * 109.47766 * 70.12662 * 17 16 10 36 36 H 1.08001 * 119.99774 * 0.02562 * 19 18 17 37 37 H 1.07996 * 119.99456 * 180.23267 * 20 19 18 38 38 H 1.08003 * 120.00355 * 179.83179 * 21 20 19 39 39 H 1.07997 * 120.00934 * 179.97438 * 22 21 20 40 40 H 1.07994 * 120.00247 * 359.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2402 -3.6593 0.1270 11 1 2.9607 -3.6143 -0.6897 12 6 2.9770 -3.5574 1.4646 13 7 3.8984 -4.6946 1.6017 14 6 3.1691 -5.9691 1.5424 15 6 2.4324 -6.0709 0.2047 16 7 1.5113 -4.9340 0.0680 17 6 0.7292 -5.0363 -1.1713 18 6 -0.1907 -6.2271 -1.0879 19 6 0.2367 -7.4633 -1.5352 20 6 -0.6057 -8.5564 -1.4550 21 6 -1.8783 -8.4117 -0.9353 22 6 -2.3076 -7.1744 -0.4928 23 6 -1.4639 -6.0820 -0.5693 24 1 -0.4850 0.8401 -0.0004 25 1 0.6941 -2.5973 -0.9325 26 1 0.5578 -2.5186 0.8405 27 1 3.5417 -2.6258 1.4988 28 1 2.2541 -3.5750 2.2802 29 1 4.4356 -4.6248 2.4529 30 1 2.4484 -6.0140 2.3588 31 1 3.8736 -6.7958 1.6334 32 1 3.1553 -6.0534 -0.6109 33 1 1.8679 -7.0028 0.1705 34 1 0.1386 -4.1297 -1.3042 35 1 1.4044 -5.1575 -2.0182 36 1 1.2300 -7.5758 -1.9440 37 1 -0.2703 -9.5230 -1.8010 38 1 -2.5374 -9.2651 -0.8751 39 1 -3.3021 -7.0611 -0.0871 40 1 -1.7993 -5.1154 -0.2236 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259706913.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:35 Heat of formation + Delta-G solvation = 29.467950 kcal Electronic energy + Delta-G solvation = -19641.260074 eV Core-core repulsion = 16841.320413 eV Total energy + Delta-G solvation = -2799.939661 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.48769 -38.20206 -34.38660 -33.42452 -31.38114 -30.84625 -30.55916 -27.51559 -26.17137 -23.77458 -23.29664 -22.35193 -20.93047 -20.66834 -18.84208 -16.59872 -16.53410 -16.06414 -15.10225 -14.99354 -14.44446 -14.32955 -14.25826 -13.97030 -13.58475 -13.29070 -13.11274 -12.37477 -12.28867 -12.10069 -11.99233 -11.50162 -11.23979 -11.00467 -10.89252 -10.83719 -10.72194 -10.46311 -10.14763 -9.84245 -9.29114 -9.10622 -8.73316 -8.53568 -8.34612 -8.09048 -7.67050 -6.01920 -4.03598 1.51997 1.58351 3.30312 3.38381 3.42254 3.90890 4.42194 4.63539 4.67014 5.02235 5.04662 5.14551 5.27864 5.34447 5.38083 5.60392 5.62635 5.65634 5.70229 5.85262 5.91555 6.05334 6.12491 6.16770 6.22319 6.25482 6.35285 6.50463 6.61508 6.67405 6.74270 6.89898 6.93476 7.18236 7.40282 7.48676 7.57123 7.69445 7.82774 7.87188 8.05011 8.40971 9.02768 9.60148 11.09400 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.021217 B = 0.005622 C = 0.004683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.393486 B = 4979.486889 C = 5977.275061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.890 3.110 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.517 4.517 8 H 0.057 0.943 9 C 0.029 3.971 10 C 0.095 3.905 11 H 0.035 0.965 12 C 0.076 3.924 13 N -0.698 5.698 14 C 0.062 3.938 15 C 0.054 3.946 16 N -0.530 5.530 17 C 0.085 3.915 18 C -0.063 4.063 19 C -0.119 4.119 20 C -0.126 4.126 21 C -0.130 4.130 22 C -0.123 4.123 23 C -0.096 4.096 24 H 0.260 0.740 25 H 0.018 0.982 26 H 0.028 0.972 27 H 0.087 0.913 28 H 0.033 0.967 29 H 0.334 0.666 30 H 0.033 0.967 31 H 0.067 0.933 32 H 0.032 0.968 33 H 0.072 0.928 34 H 0.101 0.899 35 H 0.036 0.964 36 H 0.116 0.884 37 H 0.116 0.884 38 H 0.115 0.885 39 H 0.118 0.882 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.145 -15.182 -0.131 15.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.718 3.282 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.556 4.556 8 H 0.075 0.925 9 C -0.008 4.008 10 C -0.013 4.013 11 H 0.053 0.947 12 C -0.053 4.053 13 N -0.328 5.328 14 C -0.068 4.068 15 C -0.075 4.075 16 N -0.254 5.254 17 C -0.042 4.042 18 C -0.064 4.064 19 C -0.137 4.137 20 C -0.144 4.144 21 C -0.148 4.148 22 C -0.141 4.141 23 C -0.115 4.115 24 H 0.069 0.931 25 H 0.037 0.963 26 H 0.046 0.954 27 H 0.106 0.894 28 H 0.051 0.949 29 H 0.151 0.849 30 H 0.051 0.949 31 H 0.086 0.914 32 H 0.050 0.950 33 H 0.091 0.909 34 H 0.119 0.881 35 H 0.054 0.946 36 H 0.134 0.866 37 H 0.134 0.866 38 H 0.133 0.867 39 H 0.136 0.864 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -0.147 -15.069 -0.401 15.075 hybrid contribution 0.531 0.908 0.223 1.075 sum 0.384 -14.161 -0.179 14.167 Atomic orbital electron populations 1.69977 1.06019 1.26481 1.50741 1.24978 0.94790 0.99140 0.95292 0.86570 0.80191 0.83910 0.77558 1.19691 1.21074 1.21055 1.21217 0.93035 0.90723 1.50648 0.92468 1.19219 0.93802 0.90153 0.97657 1.21868 0.95154 0.88609 0.95634 0.94677 1.22020 0.93625 0.92684 0.96994 1.60635 1.27193 1.02544 1.42453 1.21909 0.95746 0.92161 0.96984 1.22177 0.93887 0.94886 0.96505 1.62210 1.25413 1.02780 1.35041 1.21192 0.95289 0.96830 0.90934 1.19938 0.94759 0.94693 0.96985 1.21072 0.99413 0.92608 1.00619 1.21035 0.94402 0.98344 1.00630 1.21058 0.96276 0.97319 1.00156 1.21146 0.99667 0.92990 1.00279 1.21164 0.93387 0.99180 0.97763 0.93062 0.96349 0.95356 0.89432 0.94884 0.84900 0.94869 0.91421 0.94966 0.90921 0.88091 0.94618 0.86620 0.86607 0.86666 0.86358 0.85571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.24 13.29 55.43 0.74 -25.51 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 4 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.52 -14.13 8.31 -34.44 -0.29 -14.42 16 8 H 0.06 1.54 7.09 -52.49 -0.37 1.16 16 9 C 0.03 0.74 4.26 -27.89 -0.12 0.62 16 10 C 0.09 2.01 2.01 -67.66 -0.14 1.87 16 11 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 12 C 0.08 1.48 5.75 -3.74 -0.02 1.46 16 13 N -0.70 -11.45 6.91 -113.60 -0.78 -12.23 16 14 C 0.06 0.93 6.72 -3.76 -0.03 0.91 16 15 C 0.05 0.87 5.27 -3.76 -0.02 0.85 16 16 N -0.53 -9.84 4.52 -227.93 -1.03 -10.87 16 17 C 0.08 1.49 4.89 -4.98 -0.02 1.46 16 18 C -0.06 -0.98 4.89 -104.62 -0.51 -1.49 16 19 C -0.12 -1.59 7.94 -39.58 -0.31 -1.91 16 20 C -0.13 -1.50 10.05 -39.59 -0.40 -1.90 16 21 C -0.13 -1.53 10.05 -39.59 -0.40 -1.93 16 22 C -0.12 -1.58 10.05 -39.58 -0.40 -1.98 16 23 C -0.10 -1.46 9.70 -39.58 -0.38 -1.84 16 24 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 25 H 0.02 0.49 6.01 -51.93 -0.31 0.17 16 26 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.09 1.81 6.95 -51.93 -0.36 1.45 16 28 H 0.03 0.68 8.14 -51.92 -0.42 0.25 16 29 H 0.33 4.67 8.90 -39.29 -0.35 4.32 16 30 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 1.08 5.97 -51.93 -0.31 0.77 16 34 H 0.10 1.98 5.62 -51.92 -0.29 1.69 16 35 H 0.04 0.61 8.06 -51.93 -0.42 0.19 16 36 H 0.12 1.42 8.01 -52.49 -0.42 1.00 16 37 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 38 H 0.12 1.07 8.06 -52.48 -0.42 0.64 16 39 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 40 H 0.13 1.97 8.06 -52.49 -0.42 1.55 16 LS Contribution 316.90 15.07 4.78 4.78 Total: -1.00 -29.37 316.90 -10.65 -40.03 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -6.20 Total: 4.23 kcal Atomic # 6 Polarization: -13.59 SS G_CDS: -3.13 Total: -16.73 kcal Atomic # 7 Polarization: -47.53 SS G_CDS: -1.08 Total: -48.61 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -29.37 -10.65 -40.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259706913.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.494 kcal (2) G-P(sol) polarization free energy of solvation -29.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds