Wall clock time and date at job start Mon Mar 30 2020 04:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.48533 * 110.99689 * 2 1 4 4 C 1.54941 * 103.22485 * 159.72238 * 3 2 1 5 5 C 1.54596 * 102.92185 * 322.58605 * 4 3 2 6 6 H 1.08994 * 110.30934 * 263.03723 * 5 4 3 7 7 N 1.46900 * 110.39414 * 140.91629 * 5 4 3 8 8 C 1.46895 * 111.00276 * 89.23114 * 7 5 4 9 9 C 1.50699 * 109.47674 * 180.02562 * 8 7 5 10 10 H 1.08002 * 119.99822 * 0.02562 * 9 8 7 11 11 C 1.37870 * 120.00216 * 180.02562 * 9 8 7 12 12 N 1.31512 * 120.00373 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 120.00092 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.47079 * 59.99796 * 13 11 9 15 15 H 1.48499 * 109.47315 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47347 * 300.00484 * 13 11 9 17 17 C 1.47901 * 111.00273 * 117.39647 * 2 1 3 18 18 H 1.08999 * 110.08055 * 333.60789 * 17 2 1 19 19 C 1.50706 * 109.91456 * 94.80245 * 17 2 1 20 20 C 1.38238 * 119.99775 * 217.59196 * 19 17 2 21 21 C 1.38235 * 119.99712 * 179.97438 * 20 19 17 22 22 C 1.38234 * 120.00220 * 359.97124 * 21 20 19 23 23 C 1.38233 * 120.00037 * 0.28719 * 22 21 20 24 24 C 1.38233 * 120.00212 * 37.61241 * 19 17 2 25 25 H 1.08998 * 109.47133 * 302.59776 * 1 2 3 26 26 H 1.09003 * 109.47217 * 62.60327 * 1 2 3 27 27 H 1.09003 * 109.46777 * 182.60228 * 1 2 3 28 28 H 1.08997 * 110.66904 * 41.28990 * 3 2 1 29 29 H 1.08994 * 110.81015 * 278.21887 * 3 2 1 30 30 H 1.08996 * 110.72658 * 204.22781 * 4 3 2 31 31 H 1.09005 * 110.72335 * 80.94277 * 4 3 2 32 32 H 1.00905 * 111.00437 * 213.19050 * 7 5 4 33 33 H 1.09004 * 109.47315 * 300.00535 * 8 7 5 34 34 H 1.09002 * 109.46948 * 60.00309 * 8 7 5 35 35 H 0.97001 * 120.00335 * 180.02562 * 12 11 9 36 36 H 1.08005 * 120.00068 * 359.97438 * 20 19 17 37 37 H 1.07999 * 119.99770 * 179.97438 * 21 20 19 38 38 H 1.08002 * 119.99744 * 180.02562 * 22 21 20 39 39 H 1.07998 * 120.00395 * 179.72811 * 23 22 21 40 40 H 1.07999 * 119.99956 * 0.02562 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3867 0.0000 4 6 3.4492 1.2107 0.5227 5 6 3.2983 0.1053 1.5930 6 1 3.2138 0.5485 2.5852 7 7 4.4418 -0.8154 1.5427 8 6 5.5296 -0.3522 2.4145 9 6 6.6826 -1.3194 2.3363 10 1 6.6144 -2.1908 1.7020 11 6 7.8246 -1.0917 3.0745 12 7 7.9076 -0.0308 3.8472 13 14 9.2536 -2.2910 2.9781 14 1 9.7412 -2.3685 1.5775 15 1 10.3532 -1.8226 3.8593 16 1 8.8026 -3.6350 3.4202 17 6 1.9991 -0.6353 1.2259 18 1 1.2772 -0.5433 2.0373 19 6 2.2939 -2.0899 0.9639 20 6 2.0440 -3.0330 1.9433 21 6 2.3139 -4.3673 1.7027 22 6 2.8330 -4.7585 0.4828 23 6 3.0878 -3.8148 -0.4946 24 6 2.8144 -2.4810 -0.2555 25 1 -0.3633 0.5536 0.8658 26 1 -0.3634 0.4729 -0.9124 27 1 -0.3633 -1.0267 0.0467 28 1 1.4237 2.0204 0.6729 29 1 2.0040 1.8004 -1.0084 30 1 3.8123 2.1352 0.9716 31 1 4.1115 0.8836 -0.2788 32 1 4.1609 -1.7544 1.7827 33 1 5.8606 0.6342 2.0896 34 1 5.1719 -0.2951 3.4425 35 1 8.7112 0.1295 4.3663 36 1 1.6380 -2.7274 2.8963 37 1 2.1191 -5.1040 2.4680 38 1 3.0434 -5.8010 0.2948 39 1 3.4975 -4.1198 -1.4462 40 1 3.0103 -1.7441 -1.0203 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298363925.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:30 Heat of formation + Delta-G solvation = 39.206972 kcal Electronic energy + Delta-G solvation = -19897.910285 eV Core-core repulsion = 17098.392939 eV Total energy + Delta-G solvation = -2799.517346 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.93978 -37.79386 -34.78243 -32.52261 -31.57005 -30.47313 -30.29511 -27.46619 -25.98368 -24.60487 -22.41238 -21.97403 -21.78519 -20.43961 -19.22845 -16.67436 -16.41678 -15.71947 -15.29657 -14.81342 -14.56698 -14.34702 -14.27503 -13.71277 -13.27527 -12.96181 -12.95954 -12.58064 -12.20723 -12.04785 -11.75556 -11.55794 -11.32993 -11.05444 -10.87840 -10.79648 -10.69187 -10.59572 -10.53580 -10.18581 -9.79888 -9.13736 -8.51119 -8.44632 -8.36483 -8.24244 -7.20919 -5.98739 -3.99825 1.71371 1.85678 3.36650 3.39865 3.43728 4.01103 4.23934 4.46837 4.87338 5.03318 5.08917 5.22666 5.26392 5.34979 5.37311 5.42473 5.47449 5.51704 5.57040 5.65671 5.85542 5.86089 5.97606 6.04209 6.05340 6.17825 6.31795 6.36628 6.47092 6.65931 6.82004 6.88611 6.92528 7.06856 7.24434 7.34355 7.40801 7.47977 7.85260 8.19421 8.48494 8.69901 9.09790 9.64832 11.12497 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.017995 B = 0.006787 C = 0.005369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.573433 B = 4124.622261 C = 5214.131436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.509 5.509 3 C 0.035 3.965 4 C -0.111 4.111 5 C 0.083 3.917 6 H 0.042 0.958 7 N -0.675 5.675 8 C 0.194 3.806 9 C -0.509 4.509 10 H 0.061 0.939 11 C 0.056 3.944 12 N -0.900 5.900 13 Si 0.897 3.103 14 H -0.276 1.276 15 H -0.288 1.288 16 H -0.277 1.277 17 C 0.103 3.897 18 H 0.054 0.946 19 C -0.062 4.062 20 C -0.124 4.124 21 C -0.126 4.126 22 C -0.123 4.123 23 C -0.127 4.127 24 C -0.057 4.057 25 H 0.024 0.976 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.040 0.960 29 H 0.080 0.920 30 H 0.066 0.934 31 H 0.087 0.913 32 H 0.335 0.665 33 H 0.027 0.973 34 H -0.017 1.017 35 H 0.261 0.739 36 H 0.113 0.887 37 H 0.115 0.885 38 H 0.114 0.886 39 H 0.116 0.884 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.901 -2.380 -6.640 16.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.233 5.233 3 C -0.093 4.093 4 C -0.149 4.149 5 C -0.029 4.029 6 H 0.060 0.940 7 N -0.310 5.310 8 C 0.067 3.933 9 C -0.548 4.548 10 H 0.079 0.921 11 C -0.145 4.145 12 N -0.539 5.539 13 Si 0.725 3.275 14 H -0.202 1.202 15 H -0.214 1.214 16 H -0.203 1.203 17 C -0.006 4.006 18 H 0.072 0.928 19 C -0.063 4.063 20 C -0.143 4.143 21 C -0.144 4.144 22 C -0.142 4.142 23 C -0.145 4.145 24 C -0.076 4.076 25 H 0.043 0.957 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.058 0.942 29 H 0.099 0.901 30 H 0.084 0.916 31 H 0.106 0.894 32 H 0.157 0.843 33 H 0.045 0.955 34 H 0.000 1.000 35 H 0.070 0.930 36 H 0.131 0.869 37 H 0.133 0.867 38 H 0.132 0.868 39 H 0.134 0.866 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -14.353 -2.285 -7.531 16.369 hybrid contribution 0.234 -0.313 1.796 1.838 sum -14.119 -2.597 -5.735 15.459 Atomic orbital electron populations 1.22494 0.88337 1.01799 1.00467 1.64557 1.07373 1.14941 1.36392 1.23248 0.96017 0.89205 1.00831 1.22574 0.95202 0.97898 0.99249 1.22273 0.89939 0.93824 0.96822 0.94016 1.60971 1.07063 1.04307 1.58625 1.19579 0.88200 0.96690 0.88800 1.21138 0.99485 1.08763 1.25420 0.92108 1.24966 0.98613 0.95609 0.95327 1.69953 1.28439 1.27131 1.28425 0.86573 0.81718 0.81207 0.77980 1.20156 1.21392 1.20303 1.21517 0.96435 0.91769 0.90849 0.92779 1.19423 0.98949 0.93426 0.94454 1.20964 1.01484 0.93205 0.98617 1.20937 1.00673 0.95661 0.97108 1.21049 0.99914 0.99169 0.94029 1.21140 1.00592 0.93546 0.99258 1.20898 0.94856 0.95181 0.96646 0.95729 0.91429 0.91533 0.94202 0.90114 0.91575 0.89391 0.84332 0.95516 0.99968 0.92962 0.86931 0.86687 0.86809 0.86576 0.85321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.40 60.07 0.56 0.76 16 2 N -0.51 -6.99 4.36 -232.16 -1.01 -8.01 16 3 C 0.03 0.46 6.56 -1.90 -0.01 0.44 16 4 C -0.11 -1.80 6.76 -24.87 -0.17 -1.97 16 5 C 0.08 1.51 3.31 -66.36 -0.22 1.29 16 6 H 0.04 0.80 7.82 -51.93 -0.41 0.40 16 7 N -0.68 -14.82 5.50 -106.56 -0.59 -15.41 16 8 C 0.19 5.18 5.29 -4.98 -0.03 5.16 16 9 C -0.51 -14.76 9.32 -34.44 -0.32 -15.09 16 10 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 11 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 12 N -0.90 -27.27 13.29 55.43 0.74 -26.53 16 13 Si 0.90 22.15 29.54 -169.99 -5.02 17.13 16 14 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 15 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 16 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 17 C 0.10 1.59 2.67 -67.79 -0.18 1.41 16 18 H 0.05 0.79 7.64 -51.93 -0.40 0.40 16 19 C -0.06 -0.98 3.08 -104.62 -0.32 -1.30 16 20 C -0.12 -1.87 9.15 -39.58 -0.36 -2.23 16 21 C -0.13 -1.79 10.05 -39.58 -0.40 -2.18 16 22 C -0.12 -1.73 10.05 -39.58 -0.40 -2.13 16 23 C -0.13 -1.88 10.05 -39.58 -0.40 -2.27 16 24 C -0.06 -0.92 8.60 -39.58 -0.34 -1.26 16 25 H 0.02 0.26 8.01 -51.93 -0.42 -0.16 16 26 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.04 0.48 7.96 -51.93 -0.41 0.07 16 29 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.09 1.57 8.06 -51.93 -0.42 1.15 16 32 H 0.34 7.37 5.66 -39.29 -0.22 7.15 16 33 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 34 H -0.02 -0.50 8.07 -51.93 -0.42 -0.92 16 35 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 36 H 0.11 1.55 8.05 -52.48 -0.42 1.13 16 37 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 38 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 39 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 40 H 0.13 2.12 7.66 -52.49 -0.40 1.72 16 LS Contribution 323.67 15.07 4.88 4.88 Total: -1.00 -30.50 323.67 -10.13 -40.63 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -6.44 Total: 5.14 kcal Atomic # 6 Polarization: -15.15 SS G_CDS: -2.68 Total: -17.83 kcal Atomic # 7 Polarization: -49.08 SS G_CDS: -0.86 Total: -49.95 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.50 -10.13 -40.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298363925.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.837 kcal (2) G-P(sol) polarization free energy of solvation -30.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.630 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds