Wall clock time and date at job start Mon Mar 30 2020 04:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.48533 * 110.99689 * 2 1 4 4 C 1.54941 * 103.22485 * 159.72238 * 3 2 1 5 5 C 1.54596 * 102.92185 * 322.58605 * 4 3 2 6 6 H 1.08994 * 110.30934 * 263.03723 * 5 4 3 7 7 N 1.46900 * 110.39414 * 140.91629 * 5 4 3 8 8 C 1.46895 * 111.00276 * 89.23114 * 7 5 4 9 9 C 1.50699 * 109.47674 * 180.02562 * 8 7 5 10 10 H 1.08002 * 119.99822 * 0.02562 * 9 8 7 11 11 C 1.37870 * 120.00216 * 180.02562 * 9 8 7 12 12 N 1.31512 * 120.00373 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 120.00092 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.47079 * 59.99796 * 13 11 9 15 15 H 1.48499 * 109.47315 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47347 * 300.00484 * 13 11 9 17 17 C 1.47901 * 111.00273 * 117.39647 * 2 1 3 18 18 H 1.08999 * 110.08055 * 333.60789 * 17 2 1 19 19 C 1.50706 * 109.91456 * 94.80245 * 17 2 1 20 20 C 1.38238 * 119.99775 * 217.59196 * 19 17 2 21 21 C 1.38235 * 119.99712 * 179.97438 * 20 19 17 22 22 C 1.38234 * 120.00220 * 359.97124 * 21 20 19 23 23 C 1.38233 * 120.00037 * 0.28719 * 22 21 20 24 24 C 1.38233 * 120.00212 * 37.61241 * 19 17 2 25 25 H 1.08998 * 109.47133 * 302.59776 * 1 2 3 26 26 H 1.09003 * 109.47217 * 62.60327 * 1 2 3 27 27 H 1.09003 * 109.46777 * 182.60228 * 1 2 3 28 28 H 1.08997 * 110.66904 * 41.28990 * 3 2 1 29 29 H 1.08994 * 110.81015 * 278.21887 * 3 2 1 30 30 H 1.08996 * 110.72658 * 204.22781 * 4 3 2 31 31 H 1.09005 * 110.72335 * 80.94277 * 4 3 2 32 32 H 1.00905 * 111.00437 * 213.19050 * 7 5 4 33 33 H 1.09004 * 109.47315 * 300.00535 * 8 7 5 34 34 H 1.09002 * 109.46948 * 60.00309 * 8 7 5 35 35 H 0.97001 * 120.00335 * 180.02562 * 12 11 9 36 36 H 1.08005 * 120.00068 * 359.97438 * 20 19 17 37 37 H 1.07999 * 119.99770 * 179.97438 * 21 20 19 38 38 H 1.08002 * 119.99744 * 180.02562 * 22 21 20 39 39 H 1.07998 * 120.00395 * 179.72811 * 23 22 21 40 40 H 1.07999 * 119.99956 * 0.02562 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3867 0.0000 4 6 3.4492 1.2107 0.5227 5 6 3.2983 0.1053 1.5930 6 1 3.2138 0.5485 2.5852 7 7 4.4418 -0.8154 1.5427 8 6 5.5296 -0.3522 2.4145 9 6 6.6826 -1.3194 2.3363 10 1 6.6144 -2.1908 1.7020 11 6 7.8246 -1.0917 3.0745 12 7 7.9076 -0.0308 3.8472 13 14 9.2536 -2.2910 2.9781 14 1 9.7412 -2.3685 1.5775 15 1 10.3532 -1.8226 3.8593 16 1 8.8026 -3.6350 3.4202 17 6 1.9991 -0.6353 1.2259 18 1 1.2772 -0.5433 2.0373 19 6 2.2939 -2.0899 0.9639 20 6 2.0440 -3.0330 1.9433 21 6 2.3139 -4.3673 1.7027 22 6 2.8330 -4.7585 0.4828 23 6 3.0878 -3.8148 -0.4946 24 6 2.8144 -2.4810 -0.2555 25 1 -0.3633 0.5536 0.8658 26 1 -0.3634 0.4729 -0.9124 27 1 -0.3633 -1.0267 0.0467 28 1 1.4237 2.0204 0.6729 29 1 2.0040 1.8004 -1.0084 30 1 3.8123 2.1352 0.9716 31 1 4.1115 0.8836 -0.2788 32 1 4.1609 -1.7544 1.7827 33 1 5.8606 0.6342 2.0896 34 1 5.1719 -0.2951 3.4425 35 1 8.7112 0.1295 4.3663 36 1 1.6380 -2.7274 2.8963 37 1 2.1191 -5.1040 2.4680 38 1 3.0434 -5.8010 0.2948 39 1 3.4975 -4.1198 -1.4462 40 1 3.0103 -1.7441 -1.0203 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298363925.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:30 Heat of formation + Delta-G solvation = 20.350566 kcal Electronic energy + Delta-G solvation = -19898.727960 eV Core-core repulsion = 17098.392939 eV Total energy + Delta-G solvation = -2800.335021 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.17052 -38.94927 -36.51880 -34.52747 -32.75392 -31.80258 -31.60379 -28.98189 -27.61002 -25.89497 -23.83328 -23.54174 -23.13473 -21.70405 -20.57384 -18.60161 -17.75192 -17.11967 -16.58285 -16.48517 -16.09593 -15.82133 -15.40345 -14.94618 -14.70921 -14.48820 -14.08805 -14.05287 -13.77490 -13.33968 -13.30271 -12.97048 -12.76631 -12.66237 -12.45600 -12.27899 -12.18838 -11.95609 -11.79083 -11.73966 -11.53068 -11.26578 -10.65689 -9.66484 -9.43927 -9.42380 -9.05558 -8.22373 -6.33104 0.56012 0.70155 1.39516 1.43318 1.51317 2.39662 2.90689 3.09643 3.10713 3.52901 3.66312 3.84410 4.06312 4.12493 4.28722 4.29908 4.34477 4.43238 4.48168 4.54878 4.67508 4.71385 4.79654 4.89909 4.90923 5.01275 5.03396 5.10790 5.21087 5.27888 5.30699 5.34785 5.62274 5.68915 5.74094 5.78008 5.96780 6.05775 6.15843 6.27063 6.49376 6.75651 6.90570 7.37701 8.89140 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.017995 B = 0.006787 C = 0.005369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.573433 B = 4124.622261 C = 5214.131436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.517 5.517 3 C 0.046 3.954 4 C -0.110 4.110 5 C 0.074 3.926 6 H 0.027 0.973 7 N -0.669 5.669 8 C 0.212 3.788 9 C -0.532 4.532 10 H 0.059 0.941 11 C 0.003 3.997 12 N -0.934 5.934 13 Si 0.970 3.030 14 H -0.268 1.268 15 H -0.281 1.281 16 H -0.267 1.267 17 C 0.113 3.887 18 H 0.062 0.938 19 C -0.076 4.076 20 C -0.138 4.138 21 C -0.131 4.131 22 C -0.126 4.126 23 C -0.136 4.136 24 C -0.072 4.072 25 H 0.033 0.967 26 H 0.085 0.915 27 H 0.065 0.935 28 H 0.055 0.945 29 H 0.100 0.900 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.335 0.665 33 H 0.000 1.000 34 H -0.047 1.047 35 H 0.265 0.735 36 H 0.121 0.879 37 H 0.138 0.862 38 H 0.140 0.860 39 H 0.133 0.867 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.522 -3.677 -7.370 17.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.241 5.241 3 C -0.082 4.082 4 C -0.149 4.149 5 C -0.037 4.037 6 H 0.045 0.955 7 N -0.303 5.303 8 C 0.084 3.916 9 C -0.570 4.570 10 H 0.077 0.923 11 C -0.195 4.195 12 N -0.574 5.574 13 Si 0.794 3.206 14 H -0.193 1.193 15 H -0.206 1.206 16 H -0.192 1.192 17 C 0.004 3.996 18 H 0.080 0.920 19 C -0.077 4.077 20 C -0.156 4.156 21 C -0.149 4.149 22 C -0.144 4.144 23 C -0.154 4.154 24 C -0.091 4.091 25 H 0.051 0.949 26 H 0.104 0.896 27 H 0.084 0.916 28 H 0.073 0.927 29 H 0.118 0.882 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.157 0.843 33 H 0.018 0.982 34 H -0.029 1.029 35 H 0.074 0.926 36 H 0.139 0.861 37 H 0.156 0.844 38 H 0.158 0.842 39 H 0.151 0.849 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -15.003 -3.579 -8.277 17.505 hybrid contribution 0.381 0.105 2.021 2.059 sum -14.622 -3.474 -6.256 16.279 Atomic orbital electron populations 1.22547 0.86394 1.02204 1.01787 1.64577 1.09172 1.15041 1.35272 1.23216 0.93524 0.89356 1.02085 1.22512 0.97430 0.96908 0.98011 1.22403 0.90343 0.94105 0.96850 0.95540 1.60888 1.07669 1.04943 1.56815 1.19195 0.89427 0.95179 0.87798 1.21448 1.00609 1.09146 1.25801 0.92288 1.25913 1.01537 0.97437 0.94595 1.70081 1.29430 1.28880 1.29012 0.85428 0.77912 0.78874 0.78359 1.19321 1.20595 1.19192 1.21355 0.94788 0.91553 0.91926 0.92024 1.19521 0.99667 0.93696 0.94792 1.21197 1.01796 0.93780 0.98863 1.21284 0.99972 0.95761 0.97863 1.21397 0.99045 1.00385 0.93619 1.21420 1.00408 0.93238 1.00359 1.20919 0.95807 0.95741 0.96625 0.94871 0.89587 0.91596 0.92669 0.88182 0.91858 0.91264 0.84285 0.98214 1.02925 0.92634 0.86115 0.84442 0.84229 0.84904 0.86382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 9.40 127.69 1.20 1.58 16 2 N -0.52 -13.51 4.36 -888.42 -3.88 -17.38 16 3 C 0.05 1.13 6.56 86.65 0.57 1.70 16 4 C -0.11 -3.63 6.76 31.80 0.22 -3.42 16 5 C 0.07 2.78 3.31 45.79 0.15 2.93 16 6 H 0.03 1.07 7.82 -2.39 -0.02 1.05 16 7 N -0.67 -30.33 5.50 -491.06 -2.70 -33.03 16 8 C 0.21 11.82 5.29 85.56 0.45 12.27 16 9 C -0.53 -31.42 9.32 25.60 0.24 -31.18 16 10 H 0.06 3.43 7.81 -2.91 -0.02 3.41 16 11 C 0.00 0.19 5.46 84.65 0.46 0.66 16 12 N -0.93 -57.54 13.29 21.44 0.28 -57.25 16 13 Si 0.97 45.32 29.54 68.60 2.03 47.34 16 14 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 15 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 16 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 17 C 0.11 3.44 2.67 44.31 0.12 3.55 16 18 H 0.06 1.76 7.64 -2.39 -0.02 1.75 16 19 C -0.08 -2.38 3.08 -19.86 -0.06 -2.44 16 20 C -0.14 -4.05 9.15 22.27 0.20 -3.85 16 21 C -0.13 -3.50 10.05 22.27 0.22 -3.27 16 22 C -0.13 -3.30 10.05 22.27 0.22 -3.07 16 23 C -0.14 -3.85 10.05 22.27 0.22 -3.63 16 24 C -0.07 -2.29 8.60 22.27 0.19 -2.10 16 25 H 0.03 0.62 8.01 -2.39 -0.02 0.60 16 26 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.06 1.22 7.96 -2.39 -0.02 1.20 16 29 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 30 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.07 2.54 8.06 -2.38 -0.02 2.52 16 32 H 0.34 15.09 5.66 -89.69 -0.51 14.58 16 33 H 0.00 -0.02 8.14 -2.39 -0.02 -0.03 16 34 H -0.05 -2.83 8.07 -2.39 -0.02 -2.84 16 35 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 36 H 0.12 3.24 8.05 -2.91 -0.02 3.22 16 37 H 0.14 2.97 8.06 -2.91 -0.02 2.94 16 38 H 0.14 2.85 8.06 -2.91 -0.02 2.83 16 39 H 0.13 3.19 8.06 -2.91 -0.02 3.16 16 40 H 0.12 3.91 7.66 -2.91 -0.02 3.89 16 Total: -1.00 -66.21 323.67 0.64 -65.57 By element: Atomic # 1 Polarization: 24.53 SS G_CDS: 0.49 Total: 25.02 kcal Atomic # 6 Polarization: -34.68 SS G_CDS: 4.41 Total: -30.27 kcal Atomic # 7 Polarization: -101.38 SS G_CDS: -6.29 Total: -107.67 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.34 kcal Total: -66.21 0.64 -65.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298363925.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.924 kcal (2) G-P(sol) polarization free energy of solvation -66.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds