Wall clock time and date at job start Mon Mar 30 2020 04:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.48534 * 110.99860 * 2 1 4 4 C 1.54937 * 103.22684 * 200.27767 * 3 2 1 5 5 C 1.54595 * 102.92295 * 37.41057 * 4 3 2 6 6 H 1.09000 * 110.31109 * 219.12493 * 5 4 3 7 7 N 1.46901 * 110.30430 * 96.96129 * 5 4 3 8 8 C 1.46897 * 111.00432 * 86.45431 * 7 5 4 9 9 C 1.50698 * 109.47525 * 179.97438 * 8 7 5 10 10 H 1.07998 * 119.99866 * 0.02562 * 9 8 7 11 11 C 1.37872 * 120.00097 * 179.97438 * 9 8 7 12 12 N 1.31516 * 120.00019 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99969 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47084 * 90.00611 * 13 11 9 15 15 H 1.48499 * 109.47297 * 210.00302 * 13 11 9 16 16 H 1.48494 * 109.47219 * 330.00077 * 13 11 9 17 17 C 1.47902 * 111.00434 * 242.60306 * 2 1 3 18 18 H 1.08998 * 109.91270 * 26.29101 * 17 2 1 19 19 C 1.50700 * 109.91799 * 265.19771 * 17 2 1 20 20 C 1.38239 * 119.99707 * 321.18008 * 19 17 2 21 21 C 1.38239 * 119.99749 * 179.74118 * 20 19 17 22 22 C 1.38239 * 120.00004 * 0.55211 * 21 20 19 23 23 C 1.38238 * 119.99655 * 359.70027 * 22 21 20 24 24 C 1.38231 * 120.00229 * 141.44926 * 19 17 2 25 25 H 1.08999 * 109.47045 * 59.87649 * 1 2 3 26 26 H 1.08999 * 109.46982 * 179.87257 * 1 2 3 27 27 H 1.08997 * 109.47401 * 299.87777 * 1 2 3 28 28 H 1.09003 * 110.66800 * 81.84737 * 3 2 1 29 29 H 1.08994 * 110.81038 * 318.77875 * 3 2 1 30 30 H 1.08996 * 110.72531 * 155.77580 * 4 3 2 31 31 H 1.09005 * 110.72413 * 279.05226 * 4 3 2 32 32 H 1.00906 * 111.00271 * 322.50027 * 7 5 4 33 33 H 1.08996 * 109.47086 * 300.00402 * 8 7 5 34 34 H 1.09009 * 109.46823 * 59.99559 * 8 7 5 35 35 H 0.97007 * 119.99921 * 179.97438 * 12 11 9 36 36 H 1.07998 * 120.00156 * 359.97438 * 20 19 17 37 37 H 1.08004 * 119.99990 * 180.27122 * 21 20 19 38 38 H 1.07993 * 120.00306 * 179.72131 * 22 21 20 39 39 H 1.08004 * 119.99701 * 179.97438 * 23 22 21 40 40 H 1.08003 * 120.00047 * 0.02562 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0012 1.3867 0.0000 4 6 3.4491 1.2107 -0.5227 5 6 3.2983 0.1053 -1.5929 6 1 4.1471 -0.5775 -1.5539 7 7 3.1843 0.7026 -2.9302 8 6 4.5105 0.9430 -3.5143 9 6 4.3535 1.5542 -4.8828 10 1 3.3672 1.7454 -5.2788 11 6 5.4691 1.8703 -5.6288 12 7 6.6703 1.6379 -5.1463 13 14 5.2745 2.6285 -7.3248 14 1 5.2416 4.1083 -7.2046 15 1 6.4193 2.2268 -8.1810 16 1 4.0078 2.1533 -7.9371 17 6 1.9991 -0.6354 -1.2259 18 1 1.2744 -0.5434 -2.0348 19 6 2.2939 -2.0899 -0.9640 20 6 2.8377 -2.4778 0.2463 21 6 3.1031 -3.8127 0.4886 22 6 2.8353 -4.7582 -0.4837 23 6 2.2963 -4.3695 -1.6959 24 6 2.0256 -3.0354 -1.9360 25 1 -0.3633 0.5157 -0.8889 26 1 -0.3633 -1.0277 -0.0023 27 1 -0.3634 0.5119 0.8910 28 1 2.0041 1.7977 1.0096 29 1 1.4246 2.0228 -0.6714 30 1 3.8123 2.1352 -0.9715 31 1 4.1115 0.8837 0.2788 32 1 2.6424 1.5534 -2.9013 33 1 5.0716 1.6237 -2.8741 34 1 5.0473 -0.0021 -3.5982 35 1 7.4552 1.8599 -5.6713 36 1 3.0517 -1.7385 1.0039 37 1 3.5240 -4.1163 1.4358 38 1 3.0468 -5.8005 -0.2961 39 1 2.0875 -5.1082 -2.4556 40 1 1.6051 -2.7317 -2.8833 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298363931.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:34 Heat of formation + Delta-G solvation = 30.988494 kcal Electronic energy + Delta-G solvation = -19486.299190 eV Core-core repulsion = 16686.425465 eV Total energy + Delta-G solvation = -2799.873726 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.84595 -38.02263 -34.80040 -32.54184 -31.68253 -30.62405 -30.31673 -27.51829 -26.04448 -24.60630 -22.51089 -22.15977 -21.64998 -20.36356 -19.74065 -16.86458 -16.45935 -15.51172 -15.46078 -14.80129 -14.68304 -14.47081 -13.84344 -13.70533 -13.49238 -13.09779 -12.87920 -12.72002 -12.39294 -12.20506 -11.77484 -11.58012 -11.30696 -11.24549 -11.11386 -10.86192 -10.74200 -10.64695 -10.52906 -10.36181 -9.90742 -9.22801 -8.66032 -8.52546 -8.41754 -8.36073 -7.33442 -6.04586 -4.06864 1.59966 1.67485 3.30377 3.36735 3.41044 3.96447 4.13836 4.42383 4.86597 4.95204 5.09382 5.17800 5.21396 5.31200 5.31351 5.38289 5.45290 5.53596 5.61085 5.70679 5.76765 5.80091 5.89270 5.90253 5.95937 6.20349 6.22761 6.28178 6.37823 6.49055 6.71736 6.74097 6.81057 6.97952 7.20790 7.26494 7.27913 7.41135 7.76438 8.10908 8.34542 8.57296 9.02052 9.58131 11.06375 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.019982 B = 0.005253 C = 0.004611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.891862 B = 5329.013431 C = 6070.688563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.517 5.517 3 C 0.037 3.963 4 C -0.154 4.154 5 C 0.089 3.911 6 H 0.082 0.918 7 N -0.681 5.681 8 C 0.196 3.804 9 C -0.515 4.515 10 H 0.061 0.939 11 C 0.057 3.943 12 N -0.897 5.897 13 Si 0.898 3.102 14 H -0.281 1.281 15 H -0.286 1.286 16 H -0.273 1.273 17 C 0.109 3.891 18 H 0.073 0.927 19 C -0.058 4.058 20 C -0.091 4.091 21 C -0.130 4.130 22 C -0.129 4.129 23 C -0.125 4.125 24 C -0.110 4.110 25 H 0.028 0.972 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.077 0.923 29 H 0.045 0.955 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.327 0.673 33 H -0.012 1.012 34 H 0.028 0.972 35 H 0.261 0.739 36 H 0.126 0.874 37 H 0.116 0.884 38 H 0.114 0.886 39 H 0.117 0.883 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.994 -6.852 11.831 16.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.241 5.241 3 C -0.090 4.090 4 C -0.194 4.194 5 C -0.023 4.023 6 H 0.101 0.899 7 N -0.310 5.310 8 C 0.070 3.930 9 C -0.554 4.554 10 H 0.079 0.921 11 C -0.145 4.145 12 N -0.536 5.536 13 Si 0.726 3.274 14 H -0.207 1.207 15 H -0.212 1.212 16 H -0.198 1.198 17 C 0.001 3.999 18 H 0.091 0.909 19 C -0.059 4.059 20 C -0.110 4.110 21 C -0.148 4.148 22 C -0.147 4.147 23 C -0.143 4.143 24 C -0.128 4.128 25 H 0.047 0.953 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.096 0.904 29 H 0.063 0.937 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.144 0.856 33 H 0.006 0.994 34 H 0.046 0.954 35 H 0.071 0.929 36 H 0.144 0.856 37 H 0.134 0.866 38 H 0.132 0.868 39 H 0.135 0.865 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -9.726 -7.723 11.908 17.206 hybrid contribution 0.076 1.574 -1.139 1.944 sum -9.650 -6.149 10.769 15.714 Atomic orbital electron populations 1.22466 0.88178 1.01878 1.00480 1.64603 1.07762 1.14723 1.37012 1.23177 0.95547 0.89640 1.00652 1.23243 0.96018 1.00336 0.99825 1.22346 0.95757 0.95231 0.89000 0.89934 1.60739 1.20342 1.32278 1.17654 1.19559 0.83754 0.96006 0.93701 1.21166 0.92836 1.40377 1.00993 0.92065 1.24979 0.95154 0.95926 0.98429 1.69966 0.97547 1.48192 1.37906 0.86495 0.77729 0.79269 0.83896 1.20738 1.21216 1.19799 1.21421 0.97280 0.90559 0.90665 0.90910 1.19701 0.98011 0.94209 0.94009 1.21002 0.97521 0.95503 0.96934 1.21121 1.01133 0.93473 0.99123 1.21065 1.00344 0.99115 0.94215 1.21053 1.00182 0.95930 0.97151 1.21091 1.00051 0.92736 0.98935 0.95300 0.91578 0.91656 0.90423 0.93653 0.90587 0.91041 0.85558 0.99423 0.95388 0.92893 0.85609 0.86638 0.86753 0.86486 0.86051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.41 60.06 0.57 0.78 16 2 N -0.52 -7.03 4.41 -232.17 -1.02 -8.06 16 3 C 0.04 0.50 6.56 -1.90 -0.01 0.49 16 4 C -0.15 -2.40 6.46 -24.87 -0.16 -2.56 16 5 C 0.09 1.58 2.92 -66.36 -0.19 1.39 16 6 H 0.08 1.64 7.40 -51.93 -0.38 1.25 16 7 N -0.68 -14.34 6.13 -106.56 -0.65 -14.99 16 8 C 0.20 5.10 5.27 -4.98 -0.03 5.07 16 9 C -0.52 -14.52 9.32 -34.44 -0.32 -14.84 16 10 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 11 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 12 N -0.90 -26.80 13.29 55.43 0.74 -26.06 16 13 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 14 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 15 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 16 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 17 C 0.11 1.70 2.47 -67.80 -0.17 1.53 16 18 H 0.07 1.20 7.37 -51.93 -0.38 0.82 16 19 C -0.06 -0.89 4.74 -104.62 -0.50 -1.39 16 20 C -0.09 -1.30 9.33 -39.58 -0.37 -1.67 16 21 C -0.13 -1.66 10.05 -39.58 -0.40 -2.06 16 22 C -0.13 -1.61 10.05 -39.58 -0.40 -2.00 16 23 C -0.13 -1.65 10.05 -39.58 -0.40 -2.05 16 24 C -0.11 -1.63 9.68 -39.59 -0.38 -2.01 16 25 H 0.03 0.34 8.00 -51.93 -0.42 -0.08 16 26 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.05 0.60 8.00 -51.93 -0.42 0.19 16 30 H 0.08 1.27 7.78 -51.93 -0.40 0.87 16 31 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.33 6.63 8.47 -39.29 -0.33 6.29 16 33 H -0.01 -0.33 7.88 -51.93 -0.41 -0.74 16 34 H 0.03 0.80 8.08 -51.92 -0.42 0.38 16 35 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 36 H 0.13 1.74 7.70 -52.49 -0.40 1.34 16 37 H 0.12 1.21 8.06 -52.48 -0.42 0.78 16 38 H 0.11 1.14 8.06 -52.49 -0.42 0.72 16 39 H 0.12 1.30 8.06 -52.48 -0.42 0.88 16 40 H 0.12 1.77 8.05 -52.48 -0.42 1.35 16 LS Contribution 328.00 15.07 4.94 4.94 Total: -1.00 -29.68 328.00 -10.37 -40.04 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -6.49 Total: 5.29 kcal Atomic # 6 Polarization: -14.94 SS G_CDS: -2.85 Total: -17.80 kcal Atomic # 7 Polarization: -48.17 SS G_CDS: -0.94 Total: -49.11 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -29.68 -10.37 -40.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298363931.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.030 kcal (2) G-P(sol) polarization free energy of solvation -29.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds