Wall clock time and date at job start Mon Mar 30 2020 04:53:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.48534 * 110.99860 * 2 1 4 4 C 1.54937 * 103.22684 * 200.27767 * 3 2 1 5 5 C 1.54595 * 102.92295 * 37.41057 * 4 3 2 6 6 H 1.09000 * 110.31109 * 219.12493 * 5 4 3 7 7 N 1.46901 * 110.30430 * 96.96129 * 5 4 3 8 8 C 1.46897 * 111.00432 * 86.45431 * 7 5 4 9 9 C 1.50698 * 109.47525 * 179.97438 * 8 7 5 10 10 H 1.07998 * 119.99866 * 0.02562 * 9 8 7 11 11 C 1.37872 * 120.00097 * 179.97438 * 9 8 7 12 12 N 1.31516 * 120.00019 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99969 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47084 * 90.00611 * 13 11 9 15 15 H 1.48499 * 109.47297 * 210.00302 * 13 11 9 16 16 H 1.48494 * 109.47219 * 330.00077 * 13 11 9 17 17 C 1.47902 * 111.00434 * 242.60306 * 2 1 3 18 18 H 1.08998 * 109.91270 * 26.29101 * 17 2 1 19 19 C 1.50700 * 109.91799 * 265.19771 * 17 2 1 20 20 C 1.38239 * 119.99707 * 321.18008 * 19 17 2 21 21 C 1.38239 * 119.99749 * 179.74118 * 20 19 17 22 22 C 1.38239 * 120.00004 * 0.55211 * 21 20 19 23 23 C 1.38238 * 119.99655 * 359.70027 * 22 21 20 24 24 C 1.38231 * 120.00229 * 141.44926 * 19 17 2 25 25 H 1.08999 * 109.47045 * 59.87649 * 1 2 3 26 26 H 1.08999 * 109.46982 * 179.87257 * 1 2 3 27 27 H 1.08997 * 109.47401 * 299.87777 * 1 2 3 28 28 H 1.09003 * 110.66800 * 81.84737 * 3 2 1 29 29 H 1.08994 * 110.81038 * 318.77875 * 3 2 1 30 30 H 1.08996 * 110.72531 * 155.77580 * 4 3 2 31 31 H 1.09005 * 110.72413 * 279.05226 * 4 3 2 32 32 H 1.00906 * 111.00271 * 322.50027 * 7 5 4 33 33 H 1.08996 * 109.47086 * 300.00402 * 8 7 5 34 34 H 1.09009 * 109.46823 * 59.99559 * 8 7 5 35 35 H 0.97007 * 119.99921 * 179.97438 * 12 11 9 36 36 H 1.07998 * 120.00156 * 359.97438 * 20 19 17 37 37 H 1.08004 * 119.99990 * 180.27122 * 21 20 19 38 38 H 1.07993 * 120.00306 * 179.72131 * 22 21 20 39 39 H 1.08004 * 119.99701 * 179.97438 * 23 22 21 40 40 H 1.08003 * 120.00047 * 0.02562 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0012 1.3867 0.0000 4 6 3.4491 1.2107 -0.5227 5 6 3.2983 0.1053 -1.5929 6 1 4.1471 -0.5775 -1.5539 7 7 3.1843 0.7026 -2.9302 8 6 4.5105 0.9430 -3.5143 9 6 4.3535 1.5542 -4.8828 10 1 3.3672 1.7454 -5.2788 11 6 5.4691 1.8703 -5.6288 12 7 6.6703 1.6379 -5.1463 13 14 5.2745 2.6285 -7.3248 14 1 5.2416 4.1083 -7.2046 15 1 6.4193 2.2268 -8.1810 16 1 4.0078 2.1533 -7.9371 17 6 1.9991 -0.6354 -1.2259 18 1 1.2744 -0.5434 -2.0348 19 6 2.2939 -2.0899 -0.9640 20 6 2.8377 -2.4778 0.2463 21 6 3.1031 -3.8127 0.4886 22 6 2.8353 -4.7582 -0.4837 23 6 2.2963 -4.3695 -1.6959 24 6 2.0256 -3.0354 -1.9360 25 1 -0.3633 0.5157 -0.8889 26 1 -0.3633 -1.0277 -0.0023 27 1 -0.3634 0.5119 0.8910 28 1 2.0041 1.7977 1.0096 29 1 1.4246 2.0228 -0.6714 30 1 3.8123 2.1352 -0.9715 31 1 4.1115 0.8837 0.2788 32 1 2.6424 1.5534 -2.9013 33 1 5.0716 1.6237 -2.8741 34 1 5.0473 -0.0021 -3.5982 35 1 7.4552 1.8599 -5.6713 36 1 3.0517 -1.7385 1.0039 37 1 3.5240 -4.1163 1.4358 38 1 3.0468 -5.8005 -0.2961 39 1 2.0875 -5.1082 -2.4556 40 1 1.6051 -2.7317 -2.8833 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298363931.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:33 Heat of formation + Delta-G solvation = 12.449631 kcal Electronic energy + Delta-G solvation = -19487.103096 eV Core-core repulsion = 16686.425465 eV Total energy + Delta-G solvation = -2800.677631 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.04632 -39.15952 -36.50806 -34.52274 -32.78889 -31.81846 -31.64905 -29.04461 -27.62322 -25.90622 -23.96489 -23.58732 -22.92602 -21.72661 -20.99738 -18.61441 -17.91044 -16.86057 -16.77572 -16.45168 -15.94247 -15.77784 -15.22173 -15.03614 -14.79873 -14.45415 -14.13454 -14.06045 -13.76916 -13.58794 -13.47968 -12.86244 -12.81776 -12.75048 -12.43695 -12.39632 -12.29434 -12.05145 -11.83380 -11.70898 -11.65258 -11.30037 -10.68245 -9.72336 -9.58318 -9.46929 -9.09528 -8.23957 -6.35576 0.52923 0.61200 1.39869 1.41705 1.53374 2.38351 2.87965 2.99262 3.09407 3.55306 3.66792 3.82005 4.09466 4.11708 4.19476 4.26060 4.34275 4.40038 4.48010 4.56311 4.59841 4.69549 4.80629 4.83614 4.93656 4.99325 5.02236 5.05126 5.11615 5.20879 5.25256 5.29894 5.58194 5.65408 5.69937 5.71786 5.88933 6.01939 6.13124 6.22607 6.40699 6.68384 6.86017 7.35504 8.87595 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.019982 B = 0.005253 C = 0.004611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.891862 B = 5329.013431 C = 6070.688563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.515 5.515 3 C 0.045 3.955 4 C -0.150 4.150 5 C 0.086 3.914 6 H 0.055 0.945 7 N -0.678 5.678 8 C 0.215 3.785 9 C -0.536 4.536 10 H 0.064 0.936 11 C 0.003 3.997 12 N -0.933 5.933 13 Si 0.973 3.027 14 H -0.270 1.270 15 H -0.282 1.282 16 H -0.265 1.265 17 C 0.123 3.877 18 H 0.059 0.941 19 C -0.077 4.077 20 C -0.101 4.101 21 C -0.131 4.131 22 C -0.129 4.129 23 C -0.130 4.130 24 C -0.132 4.132 25 H 0.027 0.973 26 H 0.066 0.934 27 H 0.087 0.913 28 H 0.103 0.897 29 H 0.047 0.953 30 H 0.060 0.940 31 H 0.079 0.921 32 H 0.334 0.666 33 H -0.035 1.035 34 H -0.007 1.007 35 H 0.265 0.735 36 H 0.127 0.873 37 H 0.142 0.858 38 H 0.144 0.856 39 H 0.137 0.863 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.134 -7.153 12.412 18.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.239 5.239 3 C -0.083 4.083 4 C -0.190 4.190 5 C -0.025 4.025 6 H 0.074 0.926 7 N -0.308 5.308 8 C 0.088 3.912 9 C -0.574 4.574 10 H 0.082 0.918 11 C -0.196 4.196 12 N -0.574 5.574 13 Si 0.797 3.203 14 H -0.195 1.195 15 H -0.207 1.207 16 H -0.190 1.190 17 C 0.014 3.986 18 H 0.077 0.923 19 C -0.078 4.078 20 C -0.120 4.120 21 C -0.149 4.149 22 C -0.147 4.147 23 C -0.148 4.148 24 C -0.150 4.150 25 H 0.046 0.954 26 H 0.085 0.915 27 H 0.105 0.895 28 H 0.121 0.879 29 H 0.065 0.935 30 H 0.079 0.921 31 H 0.097 0.903 32 H 0.151 0.849 33 H -0.018 1.018 34 H 0.011 0.989 35 H 0.074 0.926 36 H 0.145 0.855 37 H 0.160 0.840 38 H 0.162 0.838 39 H 0.155 0.845 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -10.894 -8.025 12.513 18.429 hybrid contribution 0.442 1.594 -1.256 2.077 sum -10.452 -6.431 11.257 16.653 Atomic orbital electron populations 1.22525 0.86627 1.02300 1.01464 1.64657 1.09152 1.14627 1.35465 1.23187 0.93477 0.89650 1.01936 1.23146 0.98140 0.98543 0.99131 1.22350 0.96455 0.95599 0.88123 0.92628 1.60605 1.17697 1.32437 1.20038 1.19136 0.85443 0.93336 0.93310 1.21518 0.93148 1.40767 1.01979 0.91822 1.25944 0.94646 0.96168 1.02817 1.70098 0.98463 1.49073 1.39721 0.85329 0.77929 0.78648 0.78366 1.19544 1.20735 1.18958 1.21158 0.95338 0.90985 0.91144 0.92311 1.19749 0.99308 0.93900 0.94859 1.21104 0.97817 0.96498 0.96554 1.21466 1.00303 0.92833 1.00318 1.21449 0.99087 1.00629 0.93502 1.21347 0.99722 0.95548 0.98210 1.21206 1.01198 0.93849 0.98787 0.95430 0.91511 0.89457 0.87929 0.93475 0.92108 0.90250 0.84866 1.01757 0.98853 0.92597 0.85509 0.84037 0.83787 0.84536 0.86861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 9.41 127.69 1.20 1.61 16 2 N -0.52 -13.42 4.41 -888.46 -3.92 -17.34 16 3 C 0.04 1.13 6.56 86.65 0.57 1.70 16 4 C -0.15 -4.71 6.46 31.80 0.21 -4.50 16 5 C 0.09 3.19 2.92 45.79 0.13 3.33 16 6 H 0.06 2.34 7.40 -2.39 -0.02 2.33 16 7 N -0.68 -29.72 6.13 -491.05 -3.01 -32.73 16 8 C 0.22 11.74 5.27 85.56 0.45 12.19 16 9 C -0.54 -30.87 9.32 25.60 0.24 -30.64 16 10 H 0.06 3.56 7.81 -2.91 -0.02 3.53 16 11 C 0.00 0.15 5.46 84.65 0.46 0.61 16 12 N -0.93 -56.96 13.29 21.45 0.28 -56.67 16 13 Si 0.97 44.53 29.54 68.60 2.03 46.55 16 14 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 15 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 16 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 17 C 0.12 3.85 2.47 44.31 0.11 3.96 16 18 H 0.06 1.99 7.37 -2.39 -0.02 1.97 16 19 C -0.08 -2.37 4.74 -19.87 -0.09 -2.47 16 20 C -0.10 -2.81 9.33 22.27 0.21 -2.60 16 21 C -0.13 -3.10 10.05 22.27 0.22 -2.88 16 22 C -0.13 -2.92 10.05 22.27 0.22 -2.70 16 23 C -0.13 -3.31 10.05 22.27 0.22 -3.09 16 24 C -0.13 -3.97 9.68 22.27 0.22 -3.75 16 25 H 0.03 0.60 8.00 -2.39 -0.02 0.58 16 26 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.05 1.18 8.00 -2.39 -0.02 1.17 16 30 H 0.06 2.09 7.78 -2.39 -0.02 2.07 16 31 H 0.08 2.35 8.14 -2.38 -0.02 2.33 16 32 H 0.33 13.86 8.47 -89.69 -0.76 13.10 16 33 H -0.04 -2.04 7.88 -2.39 -0.02 -2.06 16 34 H -0.01 -0.40 8.08 -2.38 -0.02 -0.42 16 35 H 0.27 15.16 8.31 -92.70 -0.77 14.39 16 36 H 0.13 3.41 7.70 -2.91 -0.02 3.39 16 37 H 0.14 2.54 8.06 -2.91 -0.02 2.52 16 38 H 0.14 2.38 8.06 -2.91 -0.02 2.35 16 39 H 0.14 2.82 8.06 -2.91 -0.02 2.80 16 40 H 0.11 3.46 8.05 -2.91 -0.02 3.44 16 Total: -1.00 -64.92 328.00 0.00 -64.92 By element: Atomic # 1 Polarization: 24.23 SS G_CDS: 0.24 Total: 24.48 kcal Atomic # 6 Polarization: -33.58 SS G_CDS: 4.37 Total: -29.21 kcal Atomic # 7 Polarization: -100.10 SS G_CDS: -6.64 Total: -106.74 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.55 kcal Total: -64.92 0.00 -64.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298363931.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.372 kcal (2) G-P(sol) polarization free energy of solvation -64.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds