Wall clock time and date at job start Mon Mar 30 2020 04:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 120.00121 * 2 1 4 4 H 1.48501 * 109.47186 * 269.99854 * 3 2 1 5 5 H 1.48505 * 109.47405 * 29.99981 * 3 2 1 6 6 H 1.48504 * 109.46869 * 150.00023 * 3 2 1 7 7 C 1.37878 * 119.99739 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99651 * 0.02562 * 7 2 1 9 9 C 1.50695 * 120.00126 * 179.97438 * 7 2 1 10 10 C 1.52997 * 109.47459 * 180.02562 * 9 7 2 11 11 N 1.46896 * 109.47353 * 179.97438 * 10 9 7 12 12 C 1.48551 * 111.00367 * 305.42427 * 11 10 9 13 13 C 1.54614 * 104.59882 * 200.90086 * 12 11 10 14 14 H 1.08990 * 110.39890 * 265.05949 * 13 12 11 15 15 N 1.46897 * 110.35700 * 142.77263 * 13 12 11 16 16 C 1.54262 * 104.94690 * 23.92909 * 13 12 11 17 17 H 1.08997 * 110.32557 * 240.97914 * 16 13 12 18 18 C 1.50701 * 110.32588 * 118.86930 * 16 13 12 19 19 C 1.38232 * 119.99886 * 301.33602 * 18 16 13 20 20 C 1.38243 * 120.00069 * 179.97438 * 19 18 16 21 21 C 1.38235 * 119.99602 * 0.09581 * 20 19 18 22 22 C 1.38230 * 120.00326 * 359.97438 * 21 20 19 23 23 C 1.38234 * 120.00242 * 121.42548 * 18 16 13 24 24 C 1.48556 * 111.00183 * 189.99952 * 11 10 9 25 25 H 0.97003 * 119.99547 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.46972 * 60.00289 * 9 7 2 27 27 H 1.09002 * 109.47482 * 300.00486 * 9 7 2 28 28 H 1.08999 * 109.46897 * 60.00115 * 10 9 7 29 29 H 1.09002 * 109.47065 * 300.00612 * 10 9 7 30 30 H 1.09009 * 110.40838 * 319.73490 * 12 11 10 31 31 H 1.09002 * 110.41769 * 82.05790 * 12 11 10 32 32 H 1.00903 * 110.99594 * 64.48571 * 15 13 12 33 33 H 1.00898 * 111.00365 * 188.43286 * 15 13 12 34 34 H 1.08001 * 120.00365 * 0.06714 * 19 18 16 35 35 H 1.08000 * 119.99728 * 180.36512 * 20 19 18 36 36 H 1.08000 * 119.99297 * 179.97438 * 21 20 19 37 37 H 1.08001 * 120.00371 * 179.97438 * 22 21 20 38 38 H 1.08000 * 119.99729 * 359.97438 * 23 18 16 39 39 H 1.08999 * 110.41145 * 40.26617 * 24 11 10 40 40 H 1.09002 * 110.51637 * 277.87137 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5114 -1.1942 0.0000 10 6 4.0214 -2.6367 0.0001 11 7 5.4904 -2.6367 -0.0011 12 6 6.0220 -1.8333 -1.1319 13 6 7.4663 -2.3480 -1.3305 14 1 8.1719 -1.7181 -0.7889 15 7 7.8044 -2.3829 -2.7596 16 6 7.4641 -3.7754 -0.7456 17 1 8.1699 -3.8465 0.0820 18 6 7.8094 -4.7798 -1.8147 19 6 7.0302 -4.8734 -2.9526 20 6 7.3473 -5.7944 -3.9336 21 6 8.4424 -6.6230 -3.7756 22 6 9.2207 -6.5304 -2.6370 23 6 8.9043 -5.6087 -1.6566 24 6 6.0225 -4.0027 -0.2419 25 1 -0.4849 0.8401 0.0004 26 1 3.8751 -0.6798 0.8895 27 1 3.8745 -0.6809 -0.8905 28 1 3.6577 -3.1506 -0.8897 29 1 3.6583 -3.1503 0.8903 30 1 5.4297 -2.0041 -2.0310 31 1 6.0267 -0.7737 -0.8764 32 1 7.8089 -1.4536 -3.1529 33 1 8.6893 -2.8436 -2.9108 34 1 6.1746 -4.2260 -3.0761 35 1 6.7419 -5.8634 -4.8254 36 1 8.6898 -7.3428 -4.5419 37 1 10.0761 -7.1781 -2.5134 38 1 9.5124 -5.5363 -0.7670 39 1 5.4304 -4.5129 -1.0016 40 1 6.0297 -4.5785 0.6836 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000302359633.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:58 Heat of formation + Delta-G solvation = 31.784263 kcal Electronic energy + Delta-G solvation = -19394.960210 eV Core-core repulsion = 16595.120992 eV Total energy + Delta-G solvation = -2799.839218 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.12248 -38.09233 -34.76000 -32.82032 -31.99519 -30.82913 -30.37676 -27.74959 -27.30928 -24.35128 -22.61710 -22.14756 -21.42700 -20.06134 -19.20085 -16.91411 -16.84154 -16.15861 -15.38652 -15.28112 -14.77786 -14.55970 -14.29197 -14.07974 -13.52859 -13.32611 -13.11844 -12.65717 -12.54872 -12.42522 -11.88354 -11.60087 -11.33950 -11.30365 -11.08669 -10.89726 -10.79802 -10.65452 -9.98467 -9.84285 -9.72092 -9.20209 -8.97873 -8.66052 -8.54004 -8.50796 -7.99043 -6.03891 -4.01996 1.36561 1.48091 3.31324 3.38925 3.44064 3.80913 4.20929 4.46212 4.64965 4.74425 4.82775 4.94207 4.97268 5.02511 5.20042 5.30475 5.34003 5.48464 5.52109 5.62555 5.76785 5.95090 5.97541 6.03002 6.04050 6.14084 6.17944 6.26738 6.31361 6.47857 6.58005 6.73725 6.75267 7.04066 7.05491 7.14619 7.26345 7.38492 7.42634 7.60663 7.84567 8.53652 9.00370 9.58493 11.09555 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.035898 B = 0.004298 C = 0.004204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.801167 B = 6513.339619 C = 6658.227534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.068 3.932 3 Si 0.880 3.120 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.521 4.521 8 H 0.071 0.929 9 C -0.010 4.010 10 C 0.061 3.939 11 N -0.513 5.513 12 C 0.042 3.958 13 C 0.090 3.910 14 H 0.046 0.954 15 N -0.836 5.836 16 C -0.051 4.051 17 H 0.082 0.918 18 C -0.069 4.069 19 C -0.062 4.062 20 C -0.130 4.130 21 C -0.125 4.125 22 C -0.132 4.132 23 C -0.121 4.121 24 C 0.042 3.958 25 H 0.263 0.737 26 H 0.024 0.976 27 H 0.011 0.989 28 H 0.029 0.971 29 H 0.070 0.930 30 H 0.057 0.943 31 H 0.078 0.922 32 H 0.338 0.662 33 H 0.340 0.660 34 H 0.126 0.874 35 H 0.117 0.883 36 H 0.114 0.886 37 H 0.115 0.885 38 H 0.115 0.885 39 H 0.048 0.952 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.225 -9.751 -5.932 23.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.134 4.134 3 Si 0.707 3.293 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.188 1.188 7 C -0.559 4.559 8 H 0.089 0.911 9 C -0.047 4.047 10 C -0.067 4.067 11 N -0.237 5.237 12 C -0.087 4.087 13 C -0.021 4.021 14 H 0.064 0.936 15 N -0.367 5.367 16 C -0.070 4.070 17 H 0.100 0.900 18 C -0.070 4.070 19 C -0.080 4.080 20 C -0.148 4.148 21 C -0.143 4.143 22 C -0.150 4.150 23 C -0.139 4.139 24 C -0.086 4.086 25 H 0.073 0.927 26 H 0.042 0.958 27 H 0.029 0.971 28 H 0.047 0.953 29 H 0.088 0.912 30 H 0.075 0.925 31 H 0.096 0.904 32 H 0.151 0.849 33 H 0.154 0.846 34 H 0.144 0.856 35 H 0.135 0.865 36 H 0.132 0.868 37 H 0.133 0.867 38 H 0.133 0.867 39 H 0.066 0.934 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 19.547 -9.840 -5.467 22.556 hybrid contribution 0.852 1.152 -0.543 1.533 sum 20.399 -8.687 -6.010 22.972 Atomic orbital electron populations 1.69918 1.06303 1.26884 1.51153 1.24995 0.94713 0.99140 0.94508 0.86773 0.80506 0.83570 0.78449 1.20370 1.21386 1.18840 1.21081 0.89384 0.94530 1.50934 0.91084 1.19607 0.96769 0.91669 0.96683 1.22291 0.83849 1.00417 1.00102 1.65482 1.10698 1.07281 1.40267 1.23132 0.92972 0.98756 0.93813 1.22110 0.96999 0.94895 0.88142 0.93580 1.59016 1.38757 1.24536 1.14417 1.21012 0.97980 0.92593 0.95454 0.89969 1.19609 0.95382 0.96175 0.95842 1.21014 0.99111 0.95492 0.92372 1.21162 0.97719 0.96515 0.99441 1.21080 0.95881 0.99587 0.97773 1.20998 1.00064 0.99331 0.94604 1.21036 0.97438 0.96427 0.99044 1.23170 0.93058 0.92363 1.00053 0.92736 0.95798 0.97073 0.95257 0.91151 0.92501 0.90400 0.84888 0.84597 0.85586 0.86500 0.86764 0.86702 0.86677 0.93421 0.90438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.12 13.96 55.43 0.77 -27.34 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 3 Si 0.88 21.95 27.47 -169.99 -4.67 17.28 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.26 -6.37 6.54 56.52 0.37 -6.00 16 7 C -0.52 -15.03 9.66 -34.44 -0.33 -15.36 16 8 H 0.07 2.20 7.99 -52.48 -0.42 1.78 16 9 C -0.01 -0.23 3.76 -27.89 -0.10 -0.34 16 10 C 0.06 1.25 5.00 -3.83 -0.02 1.23 16 11 N -0.51 -8.94 5.49 -229.82 -1.26 -10.20 16 12 C 0.04 0.67 4.83 -2.06 -0.01 0.66 16 13 C 0.09 1.13 4.11 -66.21 -0.27 0.85 16 14 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 15 N -0.84 -8.93 6.72 -3.39 -0.02 -8.96 16 16 C -0.05 -0.62 3.28 -90.39 -0.30 -0.92 16 17 H 0.08 0.93 7.93 -51.93 -0.41 0.52 16 18 C -0.07 -0.80 3.65 -104.62 -0.38 -1.18 16 19 C -0.06 -0.74 6.87 -39.58 -0.27 -1.02 16 20 C -0.13 -1.42 10.05 -39.58 -0.40 -1.82 16 21 C -0.13 -1.24 10.05 -39.59 -0.40 -1.64 16 22 C -0.13 -1.28 10.05 -39.59 -0.40 -1.68 16 23 C -0.12 -1.25 9.68 -39.58 -0.38 -1.64 16 24 C 0.04 0.61 5.94 -2.18 -0.01 0.60 16 25 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 26 H 0.02 0.60 7.20 -51.93 -0.37 0.22 16 27 H 0.01 0.27 6.26 -51.93 -0.33 -0.06 16 28 H 0.03 0.61 7.88 -51.93 -0.41 0.20 16 29 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 30 H 0.06 0.97 7.92 -51.92 -0.41 0.56 16 31 H 0.08 1.30 7.66 -51.93 -0.40 0.90 16 32 H 0.34 3.26 9.08 -39.29 -0.36 2.90 16 33 H 0.34 3.35 7.85 -39.29 -0.31 3.05 16 34 H 0.13 1.72 7.44 -52.49 -0.39 1.33 16 35 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 36 H 0.11 0.90 8.06 -52.49 -0.42 0.48 16 37 H 0.11 0.88 8.06 -52.49 -0.42 0.46 16 38 H 0.12 1.02 7.97 -52.49 -0.42 0.60 16 39 H 0.05 0.73 6.56 -51.93 -0.34 0.39 16 40 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 LS Contribution 315.41 15.07 4.75 4.75 Total: -1.00 -30.65 315.41 -10.07 -40.72 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -6.27 Total: 4.09 kcal Atomic # 6 Polarization: -16.97 SS G_CDS: -3.38 Total: -20.34 kcal Atomic # 7 Polarization: -45.99 SS G_CDS: -0.51 Total: -46.50 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.67 Total: 17.28 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.65 -10.07 -40.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000302359633.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.505 kcal (2) G-P(sol) polarization free energy of solvation -30.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds