Wall clock time and date at job start Mon Mar 30 2020 04:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 120.00121 * 2 1 4 4 H 1.48501 * 109.47186 * 269.99854 * 3 2 1 5 5 H 1.48505 * 109.47405 * 29.99981 * 3 2 1 6 6 H 1.48504 * 109.46869 * 150.00023 * 3 2 1 7 7 C 1.37878 * 119.99739 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99651 * 0.02562 * 7 2 1 9 9 C 1.50695 * 120.00126 * 179.97438 * 7 2 1 10 10 C 1.52997 * 109.47459 * 180.02562 * 9 7 2 11 11 N 1.46896 * 109.47353 * 179.97438 * 10 9 7 12 12 C 1.48551 * 111.00367 * 305.42427 * 11 10 9 13 13 C 1.54614 * 104.59882 * 200.90086 * 12 11 10 14 14 H 1.08990 * 110.39890 * 265.05949 * 13 12 11 15 15 N 1.46897 * 110.35700 * 142.77263 * 13 12 11 16 16 C 1.54262 * 104.94690 * 23.92909 * 13 12 11 17 17 H 1.08997 * 110.32557 * 240.97914 * 16 13 12 18 18 C 1.50701 * 110.32588 * 118.86930 * 16 13 12 19 19 C 1.38232 * 119.99886 * 301.33602 * 18 16 13 20 20 C 1.38243 * 120.00069 * 179.97438 * 19 18 16 21 21 C 1.38235 * 119.99602 * 0.09581 * 20 19 18 22 22 C 1.38230 * 120.00326 * 359.97438 * 21 20 19 23 23 C 1.38234 * 120.00242 * 121.42548 * 18 16 13 24 24 C 1.48556 * 111.00183 * 189.99952 * 11 10 9 25 25 H 0.97003 * 119.99547 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.46972 * 60.00289 * 9 7 2 27 27 H 1.09002 * 109.47482 * 300.00486 * 9 7 2 28 28 H 1.08999 * 109.46897 * 60.00115 * 10 9 7 29 29 H 1.09002 * 109.47065 * 300.00612 * 10 9 7 30 30 H 1.09009 * 110.40838 * 319.73490 * 12 11 10 31 31 H 1.09002 * 110.41769 * 82.05790 * 12 11 10 32 32 H 1.00903 * 110.99594 * 64.48571 * 15 13 12 33 33 H 1.00898 * 111.00365 * 188.43286 * 15 13 12 34 34 H 1.08001 * 120.00365 * 0.06714 * 19 18 16 35 35 H 1.08000 * 119.99728 * 180.36512 * 20 19 18 36 36 H 1.08000 * 119.99297 * 179.97438 * 21 20 19 37 37 H 1.08001 * 120.00371 * 179.97438 * 22 21 20 38 38 H 1.08000 * 119.99729 * 359.97438 * 23 18 16 39 39 H 1.08999 * 110.41145 * 40.26617 * 24 11 10 40 40 H 1.09002 * 110.51637 * 277.87137 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5114 -1.1942 0.0000 10 6 4.0214 -2.6367 0.0001 11 7 5.4904 -2.6367 -0.0011 12 6 6.0220 -1.8333 -1.1319 13 6 7.4663 -2.3480 -1.3305 14 1 8.1719 -1.7181 -0.7889 15 7 7.8044 -2.3829 -2.7596 16 6 7.4641 -3.7754 -0.7456 17 1 8.1699 -3.8465 0.0820 18 6 7.8094 -4.7798 -1.8147 19 6 7.0302 -4.8734 -2.9526 20 6 7.3473 -5.7944 -3.9336 21 6 8.4424 -6.6230 -3.7756 22 6 9.2207 -6.5304 -2.6370 23 6 8.9043 -5.6087 -1.6566 24 6 6.0225 -4.0027 -0.2419 25 1 -0.4849 0.8401 0.0004 26 1 3.8751 -0.6798 0.8895 27 1 3.8745 -0.6809 -0.8905 28 1 3.6577 -3.1506 -0.8897 29 1 3.6583 -3.1503 0.8903 30 1 5.4297 -2.0041 -2.0310 31 1 6.0267 -0.7737 -0.8764 32 1 7.8089 -1.4536 -3.1529 33 1 8.6893 -2.8436 -2.9108 34 1 6.1746 -4.2260 -3.0761 35 1 6.7419 -5.8634 -4.8254 36 1 8.6898 -7.3428 -4.5419 37 1 10.0761 -7.1781 -2.5134 38 1 9.5124 -5.5363 -0.7670 39 1 5.4304 -4.5129 -1.0016 40 1 6.0297 -4.5785 0.6836 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000302359633.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:57 Heat of formation + Delta-G solvation = 10.956588 kcal Electronic energy + Delta-G solvation = -19395.863366 eV Core-core repulsion = 16595.120992 eV Total energy + Delta-G solvation = -2800.742374 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.12666 -39.14041 -36.19422 -34.73029 -33.05311 -32.02327 -31.60451 -29.08142 -28.48923 -26.03648 -23.61005 -23.10785 -22.83693 -21.52723 -20.33571 -19.01580 -17.80540 -17.18043 -16.51689 -16.32749 -16.22971 -15.84716 -15.57253 -15.40693 -14.92351 -14.64877 -14.31259 -14.08654 -13.71649 -13.49550 -13.43649 -13.14208 -12.72279 -12.62317 -12.36420 -12.03970 -11.88637 -11.79946 -11.77812 -11.65956 -11.43092 -11.36238 -10.78582 -9.80253 -9.52033 -9.45555 -9.31071 -8.32044 -6.36819 0.56101 0.67921 1.33796 1.36460 1.49206 2.34544 2.94742 3.03187 3.03434 3.58110 3.75272 3.81675 3.88956 4.18388 4.28074 4.34046 4.37999 4.40121 4.43340 4.47377 4.61463 4.71569 4.79911 4.84184 4.89140 4.96413 5.00308 5.06685 5.22984 5.25035 5.33324 5.41022 5.59056 5.70041 5.77467 5.87735 5.91390 6.04909 6.24129 6.26038 6.30287 6.61467 6.70442 7.27909 8.84796 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.035898 B = 0.004298 C = 0.004204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.801167 B = 6513.339619 C = 6658.227534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.007 3.993 3 Si 0.952 3.048 4 H -0.265 1.265 5 H -0.281 1.281 6 H -0.248 1.248 7 C -0.536 4.536 8 H 0.031 0.969 9 C 0.000 4.000 10 C 0.073 3.927 11 N -0.517 5.517 12 C 0.039 3.961 13 C 0.102 3.898 14 H 0.058 0.942 15 N -0.836 5.836 16 C -0.043 4.043 17 H 0.099 0.901 18 C -0.076 4.076 19 C -0.075 4.075 20 C -0.141 4.141 21 C -0.126 4.126 22 C -0.132 4.132 23 C -0.122 4.122 24 C 0.041 3.959 25 H 0.267 0.733 26 H 0.022 0.978 27 H 0.018 0.982 28 H 0.017 0.983 29 H 0.063 0.937 30 H 0.039 0.961 31 H 0.070 0.930 32 H 0.345 0.655 33 H 0.349 0.651 34 H 0.102 0.898 35 H 0.123 0.877 36 H 0.135 0.865 37 H 0.140 0.860 38 H 0.134 0.866 39 H 0.036 0.964 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.574 -9.735 -6.146 26.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.190 4.190 3 Si 0.775 3.225 4 H -0.190 1.190 5 H -0.207 1.207 6 H -0.172 1.172 7 C -0.574 4.574 8 H 0.049 0.951 9 C -0.037 4.037 10 C -0.055 4.055 11 N -0.240 5.240 12 C -0.090 4.090 13 C -0.010 4.010 14 H 0.076 0.924 15 N -0.369 5.369 16 C -0.062 4.062 17 H 0.117 0.883 18 C -0.077 4.077 19 C -0.093 4.093 20 C -0.160 4.160 21 C -0.144 4.144 22 C -0.150 4.150 23 C -0.140 4.140 24 C -0.087 4.087 25 H 0.076 0.924 26 H 0.040 0.960 27 H 0.036 0.964 28 H 0.036 0.964 29 H 0.081 0.919 30 H 0.057 0.943 31 H 0.089 0.911 32 H 0.159 0.841 33 H 0.164 0.836 34 H 0.120 0.880 35 H 0.141 0.859 36 H 0.153 0.847 37 H 0.158 0.842 38 H 0.152 0.848 39 H 0.054 0.946 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 22.919 -9.842 -5.691 25.584 hybrid contribution -0.240 1.022 -0.512 1.168 sum 22.679 -8.821 -6.203 25.112 Atomic orbital electron populations 1.70067 1.08283 1.28269 1.52394 1.25987 0.95623 1.03502 0.93888 0.85630 0.79500 0.78111 0.79259 1.19029 1.20698 1.17155 1.21402 0.91879 0.93249 1.50868 0.95079 1.19451 0.93653 0.94015 0.96607 1.21978 0.86392 0.97900 0.99243 1.65423 1.08061 1.09366 1.41195 1.23156 0.95108 0.98278 0.92424 1.21936 0.94703 0.95047 0.89336 0.92375 1.58920 1.39403 1.25186 1.13351 1.20965 0.96361 0.92683 0.96207 0.88280 1.19519 0.96118 0.96680 0.95377 1.20878 0.98917 0.96061 0.93464 1.21312 0.98480 0.96666 0.99500 1.21368 0.95175 0.99383 0.98475 1.21331 1.00506 0.99130 0.94022 1.21258 0.96964 0.95888 0.99874 1.23236 0.94526 0.90674 1.00275 0.92370 0.95961 0.96408 0.96449 0.91880 0.94263 0.91129 0.84139 0.83610 0.87956 0.85944 0.84671 0.84246 0.84836 0.94560 0.89647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.61 13.96 21.45 0.30 -60.31 16 2 C 0.01 0.42 5.47 84.65 0.46 0.88 16 3 Si 0.95 45.18 27.47 68.60 1.88 47.07 16 4 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 5 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 6 H -0.25 -11.06 6.54 99.48 0.65 -10.41 16 7 C -0.54 -31.92 9.66 25.60 0.25 -31.67 16 8 H 0.03 2.03 7.99 -2.91 -0.02 2.01 16 9 C 0.00 0.02 3.76 29.85 0.11 0.13 16 10 C 0.07 3.09 5.00 86.30 0.43 3.52 16 11 N -0.52 -17.81 5.49 -881.03 -4.83 -22.65 16 12 C 0.04 1.22 4.83 86.53 0.42 1.64 16 13 C 0.10 2.36 4.11 45.89 0.19 2.55 16 14 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 15 N -0.84 -16.57 6.72 -164.65 -1.11 -17.68 16 16 C -0.04 -0.97 3.28 -10.64 -0.03 -1.00 16 17 H 0.10 1.93 7.93 -2.39 -0.02 1.91 16 18 C -0.08 -1.61 3.65 -19.87 -0.07 -1.68 16 19 C -0.07 -1.75 6.87 22.27 0.15 -1.60 16 20 C -0.14 -2.91 10.05 22.27 0.22 -2.68 16 21 C -0.13 -2.16 10.05 22.27 0.22 -1.94 16 22 C -0.13 -2.11 10.05 22.27 0.22 -1.89 16 23 C -0.12 -2.14 9.68 22.27 0.22 -1.92 16 24 C 0.04 1.17 5.94 86.45 0.51 1.68 16 25 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 26 H 0.02 1.09 7.20 -2.39 -0.02 1.08 16 27 H 0.02 0.84 6.26 -2.39 -0.01 0.83 16 28 H 0.02 0.76 7.88 -2.39 -0.02 0.74 16 29 H 0.06 2.72 8.14 -2.39 -0.02 2.70 16 30 H 0.04 1.36 7.92 -2.38 -0.02 1.34 16 31 H 0.07 2.29 7.66 -2.39 -0.02 2.27 16 32 H 0.34 6.10 9.08 -89.69 -0.81 5.29 16 33 H 0.35 6.11 7.85 -89.70 -0.70 5.40 16 34 H 0.10 2.86 7.44 -2.91 -0.02 2.84 16 35 H 0.12 2.27 8.06 -2.91 -0.02 2.24 16 36 H 0.14 1.70 8.06 -2.91 -0.02 1.68 16 37 H 0.14 1.54 8.06 -2.91 -0.02 1.51 16 38 H 0.13 1.83 7.97 -2.91 -0.02 1.81 16 39 H 0.04 1.12 6.56 -2.39 -0.02 1.11 16 40 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -67.26 315.41 -0.99 -68.25 By element: Atomic # 1 Polarization: 19.85 SS G_CDS: -0.54 Total: 19.31 kcal Atomic # 6 Polarization: -37.30 SS G_CDS: 3.31 Total: -33.99 kcal Atomic # 7 Polarization: -95.00 SS G_CDS: -5.64 Total: -100.64 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 1.88 Total: 47.07 kcal Total: -67.26 -0.99 -68.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000302359633.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.210 kcal (2) G-P(sol) polarization free energy of solvation -67.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds