Wall clock time and date at job start Mon Mar 30 2020 04:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 110.27367 * 2 1 4 4 C 1.53998 * 110.30926 * 237.90456 * 2 1 3 5 5 N 1.47904 * 107.05495 * 242.21238 * 4 2 1 6 6 C 1.46906 * 110.99725 * 214.15843 * 5 4 2 7 7 C 1.50699 * 109.47140 * 170.00142 * 6 5 4 8 8 C 1.38231 * 119.99759 * 269.72247 * 7 6 5 9 9 C 1.38240 * 119.99873 * 179.76658 * 8 7 6 10 10 C 1.38235 * 119.99636 * 0.50744 * 9 8 7 11 11 C 1.38236 * 120.00231 * 359.74853 * 10 9 8 12 12 C 1.38231 * 119.99930 * 0.02562 * 11 10 9 13 13 C 1.48536 * 105.82311 * 334.67101 * 5 4 2 14 14 C 1.54596 * 110.38921 * 122.14152 * 2 1 3 15 15 H 1.09010 * 110.72652 * 22.38027 * 14 2 1 16 16 N 1.46500 * 110.72613 * 259.27465 * 14 2 1 17 17 C 1.36937 * 120.00200 * 154.99657 * 16 14 2 18 18 H 1.08000 * 120.00093 * 0.02562 * 17 16 14 19 19 C 1.38814 * 119.99693 * 180.02562 * 17 16 14 20 20 N 1.31619 * 120.00375 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99630 * 180.02562 * 19 17 16 22 22 H 1.48509 * 109.47043 * 90.00046 * 21 19 17 23 23 H 1.48498 * 109.47054 * 210.00112 * 21 19 17 24 24 H 1.48494 * 109.47222 * 330.00151 * 21 19 17 25 25 H 1.09002 * 109.47190 * 180.63743 * 1 2 3 26 26 H 1.08996 * 109.47427 * 300.64077 * 1 2 3 27 27 H 1.09008 * 109.46849 * 60.64537 * 1 2 3 28 28 H 1.09001 * 109.91261 * 122.86164 * 4 2 1 29 29 H 1.08997 * 110.07903 * 1.65820 * 4 2 1 30 30 H 1.09004 * 109.47040 * 290.00080 * 6 5 4 31 31 H 1.09000 * 109.47033 * 50.00032 * 6 5 4 32 32 H 1.07999 * 120.00208 * 0.02562 * 8 7 6 33 33 H 1.07997 * 120.00208 * 180.23609 * 9 8 7 34 34 H 1.08004 * 120.00085 * 179.72242 * 10 9 8 35 35 H 1.08000 * 120.00336 * 179.97438 * 11 10 9 36 36 H 1.08002 * 120.00382 * 179.97438 * 12 11 10 37 37 H 1.09001 * 110.66444 * 157.64549 * 13 5 4 38 38 H 1.08998 * 110.66554 * 280.77375 * 13 5 4 39 39 H 0.96997 * 119.99669 * 335.00333 * 16 14 2 40 40 H 0.96993 * 119.99934 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0224 0.0000 4 6 2.0645 -0.7674 -1.2235 5 7 2.8333 -1.9217 -0.7097 6 6 3.9769 -2.2226 -1.5813 7 6 4.8701 -3.2322 -0.9076 8 6 5.9043 -2.8067 -0.0951 9 6 6.7206 -3.7330 0.5267 10 6 6.5092 -5.0845 0.3276 11 6 5.4782 -5.5098 -0.4891 12 6 4.6590 -4.5837 -1.1072 13 6 3.2881 -1.5326 0.6498 14 6 2.0686 -0.7709 1.2270 15 1 1.3193 -1.4668 1.6048 16 7 2.4883 0.1577 2.2795 17 6 2.5066 -0.2514 3.5862 18 1 2.2122 -1.2588 3.8409 19 6 2.9038 0.6288 4.5835 20 7 3.2622 1.8566 4.2732 21 14 2.9295 0.0705 6.3659 22 1 4.2616 -0.5028 6.6859 23 1 2.6646 1.2321 7.2523 24 1 1.8829 -0.9617 6.5765 25 1 -0.3634 -1.0276 0.0114 26 1 -0.3634 0.5237 0.8841 27 1 -0.3633 0.5038 -0.8958 28 1 2.7149 -0.1205 -1.8123 29 1 1.2347 -1.1175 -1.8374 30 1 3.6164 -2.6295 -2.5261 31 1 4.5398 -1.3086 -1.7706 32 1 6.0719 -1.7508 0.0572 33 1 7.5263 -3.4006 1.1646 34 1 7.1497 -5.8081 0.8099 35 1 5.3133 -6.5657 -0.6450 36 1 3.8538 -4.9160 -1.7457 37 1 3.5089 -2.4159 1.2490 38 1 4.1580 -0.8784 0.5918 39 1 2.7530 1.0624 2.0508 40 1 3.5400 2.4715 4.9700 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306973246.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:39 Heat of formation + Delta-G solvation = 38.759899 kcal Electronic energy + Delta-G solvation = -19480.484576 eV Core-core repulsion = 16680.947844 eV Total energy + Delta-G solvation = -2799.536732 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.59130 -38.25216 -34.55702 -33.04384 -30.82077 -30.76030 -30.48737 -27.55634 -26.08753 -24.48276 -22.91429 -22.47068 -21.08275 -20.14388 -19.58137 -17.08788 -16.62734 -15.68525 -15.43565 -15.07618 -14.65539 -14.18868 -13.66744 -13.42820 -13.25728 -13.16732 -12.94009 -12.63758 -12.57396 -12.27517 -11.88684 -11.48563 -11.24800 -11.03451 -10.88686 -10.77910 -10.66355 -10.51061 -10.40794 -10.13039 -9.83159 -9.66545 -8.89074 -8.76509 -8.67225 -8.02826 -6.95733 -5.76845 -3.05508 1.45358 1.53944 3.43986 3.49520 3.50970 3.84880 4.46955 4.64601 4.82830 4.96416 5.10445 5.15611 5.21776 5.33568 5.36849 5.46156 5.60733 5.63060 5.69599 5.78386 5.85084 5.92187 6.00566 6.06474 6.11290 6.16132 6.25035 6.33569 6.43309 6.56384 6.62208 6.63145 6.64540 6.75492 6.81269 6.93913 7.11553 7.31881 7.40369 7.73103 8.42061 9.53018 10.10251 10.44706 11.45815 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.015415 B = 0.006370 C = 0.004863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.999093 B = 4394.585715 C = 5756.125016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.113 4.113 3 H 0.073 0.927 4 C 0.044 3.956 5 N -0.513 5.513 6 C 0.085 3.915 7 C -0.076 4.076 8 C -0.106 4.106 9 C -0.119 4.119 10 C -0.124 4.124 11 C -0.126 4.126 12 C -0.102 4.102 13 C 0.019 3.981 14 C 0.182 3.818 15 H 0.064 0.936 16 N -0.716 5.716 17 C -0.238 4.238 18 H 0.071 0.929 19 C -0.013 4.013 20 N -0.934 5.934 21 Si 0.905 3.095 22 H -0.290 1.290 23 H -0.292 1.292 24 H -0.281 1.281 25 H 0.053 0.947 26 H 0.059 0.941 27 H 0.044 0.956 28 H 0.037 0.963 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.040 0.960 32 H 0.120 0.880 33 H 0.120 0.880 34 H 0.117 0.883 35 H 0.118 0.882 36 H 0.120 0.880 37 H 0.072 0.928 38 H 0.043 0.957 39 H 0.383 0.617 40 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.438 -9.940 -13.045 16.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.133 4.133 3 H 0.092 0.908 4 C -0.085 4.085 5 N -0.237 5.237 6 C -0.043 4.043 7 C -0.076 4.076 8 C -0.125 4.125 9 C -0.137 4.137 10 C -0.143 4.143 11 C -0.144 4.144 12 C -0.121 4.121 13 C -0.111 4.111 14 C 0.070 3.930 15 H 0.082 0.918 16 N -0.356 5.356 17 C -0.369 4.369 18 H 0.089 0.911 19 C -0.209 4.209 20 N -0.582 5.582 21 Si 0.736 3.264 22 H -0.218 1.218 23 H -0.218 1.218 24 H -0.207 1.207 25 H 0.072 0.928 26 H 0.078 0.922 27 H 0.063 0.937 28 H 0.055 0.945 29 H 0.092 0.908 30 H 0.096 0.904 31 H 0.058 0.942 32 H 0.138 0.862 33 H 0.138 0.862 34 H 0.135 0.865 35 H 0.136 0.864 36 H 0.138 0.862 37 H 0.091 0.909 38 H 0.061 0.939 39 H 0.217 0.783 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.080 -10.467 -12.854 16.706 hybrid contribution 0.814 0.767 0.947 1.466 sum 2.894 -9.700 -11.907 15.628 Atomic orbital electron populations 1.21724 0.94760 1.01442 1.01119 1.22283 0.96269 0.99529 0.95200 0.90824 1.22911 0.97568 0.91036 0.96950 1.64882 1.19536 1.36234 1.03074 1.21230 0.90922 0.96163 0.95991 1.19760 0.95581 0.94338 0.97924 1.21150 0.95032 0.99809 0.96467 1.21126 0.99769 0.93233 0.99617 1.21107 0.98354 0.95790 0.99010 1.21091 0.95968 0.99266 0.98051 1.20978 0.98797 0.92393 0.99914 1.24063 0.99436 0.99433 0.88171 1.21166 0.93024 0.91262 0.87500 0.91808 1.42406 1.79059 1.11930 1.02242 1.19274 1.37322 0.96861 0.83440 0.91111 1.24728 1.02223 0.95929 0.97972 1.69658 1.51465 1.05023 1.32093 0.86212 0.77713 0.77305 0.85133 1.21754 1.21791 1.20697 0.92772 0.92214 0.93653 0.94471 0.90812 0.90428 0.94167 0.86220 0.86198 0.86468 0.86404 0.86164 0.90939 0.93900 0.78274 0.93538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.03 8.90 37.16 0.33 -1.70 16 2 C -0.11 -1.92 3.32 -89.26 -0.30 -2.21 16 3 H 0.07 1.32 7.75 -51.93 -0.40 0.92 16 4 C 0.04 0.64 6.35 -2.75 -0.02 0.63 16 5 N -0.51 -8.12 5.39 -231.88 -1.25 -9.37 16 6 C 0.08 1.16 5.19 -4.97 -0.03 1.14 16 7 C -0.08 -1.06 4.59 -104.63 -0.48 -1.54 16 8 C -0.11 -1.53 8.36 -39.58 -0.33 -1.87 16 9 C -0.12 -1.59 10.05 -39.58 -0.40 -1.99 16 10 C -0.12 -1.51 10.05 -39.58 -0.40 -1.91 16 11 C -0.13 -1.50 10.05 -39.58 -0.40 -1.90 16 12 C -0.10 -1.31 9.70 -39.58 -0.38 -1.70 16 13 C 0.02 0.37 4.65 -1.90 -0.01 0.36 16 14 C 0.18 3.73 3.27 -66.07 -0.22 3.51 16 15 H 0.06 1.38 7.81 -51.92 -0.41 0.97 16 16 N -0.72 -17.98 5.22 -51.62 -0.27 -18.25 16 17 C -0.24 -6.62 9.96 -15.06 -0.15 -6.77 16 18 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 19 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 20 N -0.93 -28.18 13.06 55.49 0.72 -27.46 16 21 Si 0.91 22.54 29.55 -169.99 -5.02 17.52 16 22 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 23 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 24 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 25 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.04 0.59 8.14 -51.92 -0.42 0.16 16 28 H 0.04 0.52 7.57 -51.93 -0.39 0.12 16 29 H 0.07 0.98 7.69 -51.93 -0.40 0.58 16 30 H 0.08 0.93 8.09 -51.93 -0.42 0.51 16 31 H 0.04 0.55 7.75 -51.93 -0.40 0.15 16 32 H 0.12 1.76 7.41 -52.49 -0.39 1.37 16 33 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 34 H 0.12 1.15 8.06 -52.48 -0.42 0.73 16 35 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 36 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16 37 H 0.07 1.48 7.74 -51.93 -0.40 1.08 16 38 H 0.04 0.86 7.11 -51.93 -0.37 0.49 16 39 H 0.38 10.21 7.58 -40.82 -0.31 9.90 16 40 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 323.76 15.07 4.88 4.88 Total: -1.00 -29.83 323.76 -10.20 -40.03 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: -6.40 Total: 9.05 kcal Atomic # 6 Polarization: -13.54 SS G_CDS: -2.87 Total: -16.40 kcal Atomic # 7 Polarization: -54.29 SS G_CDS: -0.79 Total: -55.08 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.83 -10.20 -40.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306973246.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.792 kcal (2) G-P(sol) polarization free energy of solvation -29.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds