Wall clock time and date at job start Mon Mar 30 2020 04:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 110.27367 * 2 1 4 4 C 1.53998 * 110.30926 * 237.90456 * 2 1 3 5 5 N 1.47904 * 107.05495 * 242.21238 * 4 2 1 6 6 C 1.46906 * 110.99725 * 214.15843 * 5 4 2 7 7 C 1.50699 * 109.47140 * 170.00142 * 6 5 4 8 8 C 1.38231 * 119.99759 * 269.72247 * 7 6 5 9 9 C 1.38240 * 119.99873 * 179.76658 * 8 7 6 10 10 C 1.38235 * 119.99636 * 0.50744 * 9 8 7 11 11 C 1.38236 * 120.00231 * 359.74853 * 10 9 8 12 12 C 1.38231 * 119.99930 * 0.02562 * 11 10 9 13 13 C 1.48536 * 105.82311 * 334.67101 * 5 4 2 14 14 C 1.54596 * 110.38921 * 122.14152 * 2 1 3 15 15 H 1.09010 * 110.72652 * 22.38027 * 14 2 1 16 16 N 1.46500 * 110.72613 * 259.27465 * 14 2 1 17 17 C 1.36937 * 120.00200 * 154.99657 * 16 14 2 18 18 H 1.08000 * 120.00093 * 0.02562 * 17 16 14 19 19 C 1.38814 * 119.99693 * 180.02562 * 17 16 14 20 20 N 1.31619 * 120.00375 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99630 * 180.02562 * 19 17 16 22 22 H 1.48509 * 109.47043 * 90.00046 * 21 19 17 23 23 H 1.48498 * 109.47054 * 210.00112 * 21 19 17 24 24 H 1.48494 * 109.47222 * 330.00151 * 21 19 17 25 25 H 1.09002 * 109.47190 * 180.63743 * 1 2 3 26 26 H 1.08996 * 109.47427 * 300.64077 * 1 2 3 27 27 H 1.09008 * 109.46849 * 60.64537 * 1 2 3 28 28 H 1.09001 * 109.91261 * 122.86164 * 4 2 1 29 29 H 1.08997 * 110.07903 * 1.65820 * 4 2 1 30 30 H 1.09004 * 109.47040 * 290.00080 * 6 5 4 31 31 H 1.09000 * 109.47033 * 50.00032 * 6 5 4 32 32 H 1.07999 * 120.00208 * 0.02562 * 8 7 6 33 33 H 1.07997 * 120.00208 * 180.23609 * 9 8 7 34 34 H 1.08004 * 120.00085 * 179.72242 * 10 9 8 35 35 H 1.08000 * 120.00336 * 179.97438 * 11 10 9 36 36 H 1.08002 * 120.00382 * 179.97438 * 12 11 10 37 37 H 1.09001 * 110.66444 * 157.64549 * 13 5 4 38 38 H 1.08998 * 110.66554 * 280.77375 * 13 5 4 39 39 H 0.96997 * 119.99669 * 335.00333 * 16 14 2 40 40 H 0.96993 * 119.99934 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0224 0.0000 4 6 2.0645 -0.7674 -1.2235 5 7 2.8333 -1.9217 -0.7097 6 6 3.9769 -2.2226 -1.5813 7 6 4.8701 -3.2322 -0.9076 8 6 5.9043 -2.8067 -0.0951 9 6 6.7206 -3.7330 0.5267 10 6 6.5092 -5.0845 0.3276 11 6 5.4782 -5.5098 -0.4891 12 6 4.6590 -4.5837 -1.1072 13 6 3.2881 -1.5326 0.6498 14 6 2.0686 -0.7709 1.2270 15 1 1.3193 -1.4668 1.6048 16 7 2.4883 0.1577 2.2795 17 6 2.5066 -0.2514 3.5862 18 1 2.2122 -1.2588 3.8409 19 6 2.9038 0.6288 4.5835 20 7 3.2622 1.8566 4.2732 21 14 2.9295 0.0705 6.3659 22 1 4.2616 -0.5028 6.6859 23 1 2.6646 1.2321 7.2523 24 1 1.8829 -0.9617 6.5765 25 1 -0.3634 -1.0276 0.0114 26 1 -0.3634 0.5237 0.8841 27 1 -0.3633 0.5038 -0.8958 28 1 2.7149 -0.1205 -1.8123 29 1 1.2347 -1.1175 -1.8374 30 1 3.6164 -2.6295 -2.5261 31 1 4.5398 -1.3086 -1.7706 32 1 6.0719 -1.7508 0.0572 33 1 7.5263 -3.4006 1.1646 34 1 7.1497 -5.8081 0.8099 35 1 5.3133 -6.5657 -0.6450 36 1 3.8538 -4.9160 -1.7457 37 1 3.5089 -2.4159 1.2490 38 1 4.1580 -0.8784 0.5918 39 1 2.7530 1.0624 2.0508 40 1 3.5400 2.4715 4.9700 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306973246.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:38 Heat of formation + Delta-G solvation = 20.587725 kcal Electronic energy + Delta-G solvation = -19481.272580 eV Core-core repulsion = 16680.947844 eV Total energy + Delta-G solvation = -2800.324737 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.77380 -39.48624 -36.23958 -34.60367 -32.55077 -31.87027 -31.68603 -29.18098 -27.26904 -26.20696 -24.50244 -23.49820 -22.32397 -21.44454 -21.09548 -19.11802 -17.67856 -17.17822 -16.69168 -16.25363 -16.11070 -15.72335 -15.20295 -14.86513 -14.61313 -14.54964 -14.23010 -13.97097 -13.83278 -13.39860 -13.21416 -12.97821 -12.92634 -12.69646 -12.48262 -12.21449 -12.01541 -11.93019 -11.81448 -11.69683 -11.61297 -11.36617 -10.91561 -9.78186 -9.72475 -9.30496 -9.01862 -7.96486 -5.25039 0.44630 0.53519 1.45255 1.46460 1.55128 2.53425 2.80436 3.24965 3.35960 3.65315 3.88477 3.94191 4.01520 4.07965 4.18053 4.24006 4.27743 4.38094 4.47856 4.59932 4.64515 4.66362 4.70793 4.72234 4.81222 5.00005 5.09939 5.13910 5.16024 5.19108 5.22284 5.33617 5.46315 5.48895 5.59263 5.64159 5.72404 5.93867 6.10355 6.16966 6.26977 7.31713 8.06387 8.30356 9.26927 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.015415 B = 0.006370 C = 0.004863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.999093 B = 4394.585715 C = 5756.125016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.108 4.108 3 H 0.060 0.940 4 C 0.049 3.951 5 N -0.511 5.511 6 C 0.086 3.914 7 C -0.091 4.091 8 C -0.129 4.129 9 C -0.135 4.135 10 C -0.127 4.127 11 C -0.126 4.126 12 C -0.108 4.108 13 C 0.040 3.960 14 C 0.173 3.827 15 H 0.052 0.948 16 N -0.727 5.727 17 C -0.239 4.239 18 H 0.072 0.928 19 C -0.072 4.072 20 N -0.969 5.969 21 Si 0.969 3.031 22 H -0.288 1.288 23 H -0.294 1.294 24 H -0.270 1.270 25 H 0.061 0.939 26 H 0.037 0.963 27 H 0.074 0.926 28 H 0.049 0.951 29 H 0.101 0.899 30 H 0.104 0.896 31 H 0.038 0.962 32 H 0.104 0.896 33 H 0.127 0.873 34 H 0.142 0.858 35 H 0.147 0.853 36 H 0.139 0.861 37 H 0.052 0.948 38 H 0.025 0.975 39 H 0.372 0.628 40 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.858 -11.896 -14.322 18.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.128 4.128 3 H 0.079 0.921 4 C -0.079 4.079 5 N -0.235 5.235 6 C -0.042 4.042 7 C -0.092 4.092 8 C -0.147 4.147 9 C -0.153 4.153 10 C -0.145 4.145 11 C -0.144 4.144 12 C -0.127 4.127 13 C -0.091 4.091 14 C 0.063 3.937 15 H 0.070 0.930 16 N -0.366 5.366 17 C -0.371 4.371 18 H 0.089 0.911 19 C -0.264 4.264 20 N -0.620 5.620 21 Si 0.798 3.202 22 H -0.216 1.216 23 H -0.220 1.220 24 H -0.195 1.195 25 H 0.080 0.920 26 H 0.056 0.944 27 H 0.093 0.907 28 H 0.067 0.933 29 H 0.119 0.881 30 H 0.122 0.878 31 H 0.056 0.944 32 H 0.122 0.878 33 H 0.145 0.855 34 H 0.160 0.840 35 H 0.165 0.835 36 H 0.156 0.844 37 H 0.070 0.930 38 H 0.043 0.957 39 H 0.205 0.795 40 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 1.484 -12.463 -14.168 18.928 hybrid contribution 1.005 1.305 1.270 2.079 sum 2.490 -11.158 -12.899 17.236 Atomic orbital electron populations 1.21675 0.93156 1.02024 1.01542 1.22216 0.97596 0.98591 0.94394 0.92115 1.22952 0.98362 0.90615 0.95962 1.64886 1.20352 1.36407 1.01859 1.21315 0.90198 0.96267 0.96381 1.19873 0.95686 0.95223 0.98369 1.21188 0.96319 0.99395 0.97827 1.21349 1.00048 0.94005 0.99902 1.21449 0.98703 0.95582 0.98786 1.21479 0.95177 1.00679 0.97047 1.21259 0.99396 0.91909 1.00106 1.23604 0.97761 0.97695 0.90042 1.21362 0.93461 0.91040 0.87865 0.92980 1.42527 1.79376 1.12154 1.02556 1.19592 1.35964 0.96737 0.84816 0.91056 1.25499 1.02854 0.96149 1.01921 1.69807 1.53091 1.06098 1.32978 0.85208 0.77817 0.76901 0.80296 1.21552 1.22000 1.19477 0.91994 0.94414 0.90681 0.93281 0.88127 0.87784 0.94399 0.87815 0.85497 0.84011 0.83529 0.84359 0.92977 0.95716 0.79546 0.94010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.65 8.90 71.98 0.64 -3.01 16 2 C -0.11 -3.59 3.32 -9.91 -0.03 -3.62 16 3 H 0.06 2.18 7.75 -2.39 -0.02 2.16 16 4 C 0.05 1.33 6.35 86.45 0.55 1.88 16 5 N -0.51 -15.43 5.39 -887.54 -4.78 -20.21 16 6 C 0.09 2.21 5.19 85.56 0.44 2.66 16 7 C -0.09 -2.48 4.59 -19.87 -0.09 -2.57 16 8 C -0.13 -3.79 8.36 22.27 0.19 -3.61 16 9 C -0.14 -3.57 10.05 22.27 0.22 -3.35 16 10 C -0.13 -2.86 10.05 22.27 0.22 -2.63 16 11 C -0.13 -2.68 10.05 22.27 0.22 -2.46 16 12 C -0.11 -2.55 9.70 22.27 0.22 -2.33 16 13 C 0.04 1.52 4.65 86.65 0.40 1.92 16 14 C 0.17 7.16 3.27 46.20 0.15 7.31 16 15 H 0.05 2.27 7.81 -2.38 -0.02 2.26 16 16 N -0.73 -37.57 5.22 -317.24 -1.66 -39.23 16 17 C -0.24 -13.59 9.96 84.03 0.84 -12.75 16 18 H 0.07 3.96 7.83 -2.91 -0.02 3.93 16 19 C -0.07 -4.19 5.50 84.86 0.47 -3.73 16 20 N -0.97 -59.91 13.06 21.65 0.28 -59.63 16 21 Si 0.97 46.92 29.55 68.60 2.03 48.95 16 22 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 23 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 24 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 25 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 28 H 0.05 1.24 7.57 -2.39 -0.02 1.22 16 29 H 0.10 2.27 7.69 -2.39 -0.02 2.25 16 30 H 0.10 2.16 8.09 -2.38 -0.02 2.14 16 31 H 0.04 1.00 7.75 -2.39 -0.02 0.98 16 32 H 0.10 3.26 7.41 -2.91 -0.02 3.24 16 33 H 0.13 3.02 8.06 -2.91 -0.02 3.00 16 34 H 0.14 2.41 8.06 -2.91 -0.02 2.39 16 35 H 0.15 2.23 8.06 -2.91 -0.02 2.20 16 36 H 0.14 2.68 8.06 -2.91 -0.02 2.66 16 37 H 0.05 2.18 7.74 -2.39 -0.02 2.16 16 38 H 0.02 1.03 7.11 -2.39 -0.02 1.01 16 39 H 0.37 20.60 7.58 -92.71 -0.70 19.90 16 40 H 0.25 15.05 8.31 -92.71 -0.77 14.27 16 Total: -1.00 -64.93 323.76 0.61 -64.31 By element: Atomic # 1 Polarization: 31.78 SS G_CDS: 0.30 Total: 32.09 kcal Atomic # 6 Polarization: -30.72 SS G_CDS: 4.44 Total: -26.28 kcal Atomic # 7 Polarization: -112.91 SS G_CDS: -6.16 Total: -119.07 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 2.03 Total: 48.95 kcal Total: -64.93 0.61 -64.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306973246.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.901 kcal (2) G-P(sol) polarization free energy of solvation -64.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds