Wall clock time and date at job start Mon Mar 30 2020 05:00:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.28709 * 125.86569 * 2 1 4 4 N 1.28634 * 110.20065 * 179.97438 * 3 2 1 5 5 C 1.33805 * 108.89271 * 359.97438 * 4 3 2 6 6 Br 1.89104 * 126.75592 * 179.97438 * 5 4 3 7 7 C 1.35368 * 125.87003 * 179.97438 * 2 1 3 8 8 C 1.50700 * 126.92208 * 0.02562 * 7 2 1 9 9 H 1.08999 * 109.47168 * 14.99348 * 8 7 2 10 10 O 1.42894 * 109.47591 * 134.99722 * 8 7 2 11 11 C 1.50701 * 109.47063 * 254.99904 * 8 7 2 12 12 H 1.07998 * 120.00186 * 359.97438 * 11 8 7 13 13 C 1.37876 * 119.99933 * 179.97438 * 11 8 7 14 14 N 1.31509 * 120.00265 * 359.97438 * 13 11 8 15 15 Si 1.86806 * 119.99738 * 179.97438 * 13 11 8 16 16 H 1.48497 * 109.47280 * 60.00433 * 15 13 11 17 17 H 1.48500 * 109.46756 * 179.97438 * 15 13 11 18 18 H 1.48493 * 109.47186 * 300.00001 * 15 13 11 19 19 H 1.09006 * 109.46980 * 90.03017 * 1 2 3 20 20 H 1.09003 * 109.47701 * 210.02318 * 1 2 3 21 21 H 1.08996 * 109.47455 * 330.03036 * 1 2 3 22 22 H 0.96701 * 114.00173 * 59.99480 * 10 8 7 23 23 H 0.97006 * 120.00246 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2191 1.0430 0.0000 4 7 3.4576 0.6957 0.0005 5 6 3.5330 -0.6402 0.0015 6 35 5.1093 -1.6847 0.0019 7 6 2.2582 -1.0970 0.0005 8 6 1.8123 -2.5365 0.0006 9 1 0.7567 -2.5899 -0.2656 10 8 2.5816 -3.2736 -0.9516 11 6 2.0145 -3.1249 1.3732 12 1 2.4252 -2.5173 2.1660 13 6 1.6752 -4.4388 1.6168 14 7 1.1746 -5.1786 0.6515 15 14 1.9265 -5.1683 3.3181 16 1 1.1279 -4.4022 4.3081 17 1 1.4859 -6.5865 3.3185 18 1 3.3649 -5.0962 3.6800 19 1 -0.3633 -0.0005 -1.0277 20 1 -0.3634 -0.8898 0.5142 21 1 -0.3634 0.8902 0.5133 22 1 3.5327 -3.2694 -0.7768 23 1 0.9363 -6.1031 0.8228 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307302596.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:24 Heat of formation + Delta-G solvation = 50.299104 kcal Electronic energy + Delta-G solvation = -12744.940265 eV Core-core repulsion = 10256.118180 eV Total energy + Delta-G solvation = -2488.822085 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 260.985 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -42.79893 -36.07423 -34.32421 -32.37252 -31.54189 -29.75596 -27.55425 -26.81376 -23.39571 -21.63304 -20.40024 -17.40338 -16.82923 -16.06120 -15.00875 -14.78732 -14.19170 -13.35294 -13.15098 -12.88106 -12.59395 -11.90652 -11.40561 -11.27473 -11.00660 -10.85370 -10.78215 -10.36907 -10.05891 -9.52500 -9.23839 -8.86781 -8.66376 -8.26760 -6.22802 -4.43246 1.80615 2.04492 2.78835 2.92394 3.20526 3.25761 3.29508 4.24634 4.90451 5.01300 5.17402 5.25738 5.51764 5.59262 5.95206 6.04482 6.14620 6.99009 7.18790 7.62393 7.79162 8.57071 8.81616 9.04652 9.32455 10.81087 Molecular weight = 260.99amu Principal moments of inertia in cm(-1) A = 0.021611 B = 0.011902 C = 0.008988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.348069 B = 2351.948419 C = 3114.566559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.293 5.293 3 N -0.101 5.101 4 N -0.248 5.248 5 C -0.047 4.047 6 Br 0.035 6.965 7 C 0.049 3.951 8 C 0.291 3.709 9 H 0.076 0.924 10 O -0.552 6.552 11 C -0.566 4.566 12 H 0.061 0.939 13 C 0.086 3.914 14 N -0.854 5.854 15 Si 0.896 3.104 16 H -0.275 1.275 17 H -0.284 1.284 18 H -0.271 1.271 19 H 0.088 0.912 20 H 0.108 0.892 21 H 0.097 0.903 22 H 0.355 0.645 23 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.550 5.271 -1.091 5.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.086 5.086 3 N -0.081 5.081 4 N -0.117 5.117 5 C -0.263 4.263 6 Br 0.116 6.884 7 C -0.087 4.087 8 C 0.231 3.769 9 H 0.093 0.907 10 O -0.358 6.358 11 C -0.604 4.604 12 H 0.079 0.921 13 C -0.122 4.122 14 N -0.489 5.489 15 Si 0.722 3.278 16 H -0.200 1.200 17 H -0.209 1.209 18 H -0.196 1.196 19 H 0.107 0.893 20 H 0.127 0.873 21 H 0.116 0.884 22 H 0.203 0.797 23 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.451 6.167 -1.433 6.496 hybrid contribution 0.116 -1.110 1.218 1.652 sum 1.567 5.057 -0.215 5.298 Atomic orbital electron populations 1.22272 0.72648 1.06151 1.04766 1.47013 1.09312 1.04359 1.47944 1.78144 0.95817 1.12149 1.22001 1.74976 1.10204 1.10602 1.15905 1.22822 0.93013 0.92525 1.17899 1.96548 1.28459 1.65249 1.98128 1.24190 0.89642 0.95202 0.99658 1.18147 0.92673 0.75705 0.90394 0.90688 1.86599 1.21817 1.74157 1.53187 1.21290 1.46930 0.97318 0.94865 0.92068 1.24966 0.93456 0.96639 0.97102 1.70040 1.39154 1.08070 1.31635 0.86598 0.79216 0.78115 0.83838 1.20001 1.20944 1.19636 0.89346 0.87329 0.88410 0.79676 0.92397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.10 11.01 59.85 0.66 1.76 14 2 N -0.29 -5.57 3.74 -63.76 -0.24 -5.81 14 3 N -0.10 -2.05 13.16 60.35 0.79 -1.25 14 4 N -0.25 -5.36 12.41 31.52 0.39 -4.97 14 5 C -0.05 -1.01 7.66 -17.70 -0.14 -1.15 14 6 Br 0.04 0.66 31.27 -68.01 -2.13 -1.46 14 7 C 0.05 1.07 5.91 -82.04 -0.49 0.58 14 8 C 0.29 6.95 3.02 -29.03 -0.09 6.87 14 9 H 0.08 1.81 7.19 -51.93 -0.37 1.44 14 10 O -0.55 -13.88 12.69 -35.23 -0.45 -14.33 14 11 C -0.57 -14.43 8.75 -34.44 -0.30 -14.73 14 12 H 0.06 1.59 7.74 -52.49 -0.41 1.18 14 13 C 0.09 2.23 5.40 -17.82 -0.10 2.13 14 14 N -0.85 -23.17 12.84 55.43 0.71 -22.46 14 15 Si 0.90 20.00 29.54 -169.99 -5.02 14.98 14 16 H -0.27 -6.05 7.11 56.52 0.40 -5.65 14 17 H -0.28 -6.27 7.11 56.52 0.40 -5.87 14 18 H -0.27 -6.06 7.11 56.52 0.40 -5.66 14 19 H 0.09 0.98 8.14 -51.93 -0.42 0.56 14 20 H 0.11 1.44 7.39 -51.93 -0.38 1.05 14 21 H 0.10 1.03 8.14 -51.93 -0.42 0.61 14 22 H 0.35 8.28 5.88 45.56 0.27 8.55 14 23 H 0.27 6.86 8.31 -40.82 -0.34 6.52 14 LS Contribution 231.50 15.07 3.49 3.49 Total: -1.00 -29.85 231.50 -3.77 -33.62 By element: Atomic # 1 Polarization: 3.61 SS G_CDS: -0.88 Total: 2.74 kcal Atomic # 6 Polarization: -4.09 SS G_CDS: -0.45 Total: -4.54 kcal Atomic # 7 Polarization: -36.15 SS G_CDS: 1.66 Total: -34.49 kcal Atomic # 8 Polarization: -13.88 SS G_CDS: -0.45 Total: -14.33 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Atomic # 35 Polarization: 0.66 SS G_CDS: -2.13 Total: -1.46 kcal Total LS contribution 3.49 Total: 3.49 kcal Total: -29.85 -3.77 -33.62 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307302596.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.916 kcal (2) G-P(sol) polarization free energy of solvation -29.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds