Wall clock time and date at job start Mon Mar 30 2020 05:00:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.28709 * 125.86569 * 2 1 4 4 N 1.28634 * 110.20065 * 179.97438 * 3 2 1 5 5 C 1.33805 * 108.89271 * 359.97438 * 4 3 2 6 6 Br 1.89104 * 126.75592 * 179.97438 * 5 4 3 7 7 C 1.35368 * 125.87003 * 179.97438 * 2 1 3 8 8 C 1.50700 * 126.92208 * 0.02562 * 7 2 1 9 9 H 1.08999 * 109.47168 * 14.99348 * 8 7 2 10 10 O 1.42894 * 109.47591 * 134.99722 * 8 7 2 11 11 C 1.50701 * 109.47063 * 254.99904 * 8 7 2 12 12 H 1.07998 * 120.00186 * 359.97438 * 11 8 7 13 13 C 1.37876 * 119.99933 * 179.97438 * 11 8 7 14 14 N 1.31509 * 120.00265 * 359.97438 * 13 11 8 15 15 Si 1.86806 * 119.99738 * 179.97438 * 13 11 8 16 16 H 1.48497 * 109.47280 * 60.00433 * 15 13 11 17 17 H 1.48500 * 109.46756 * 179.97438 * 15 13 11 18 18 H 1.48493 * 109.47186 * 300.00001 * 15 13 11 19 19 H 1.09006 * 109.46980 * 90.03017 * 1 2 3 20 20 H 1.09003 * 109.47701 * 210.02318 * 1 2 3 21 21 H 1.08996 * 109.47455 * 330.03036 * 1 2 3 22 22 H 0.96701 * 114.00173 * 59.99480 * 10 8 7 23 23 H 0.97006 * 120.00246 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2191 1.0430 0.0000 4 7 3.4576 0.6957 0.0005 5 6 3.5330 -0.6402 0.0015 6 35 5.1093 -1.6847 0.0019 7 6 2.2582 -1.0970 0.0005 8 6 1.8123 -2.5365 0.0006 9 1 0.7567 -2.5899 -0.2656 10 8 2.5816 -3.2736 -0.9516 11 6 2.0145 -3.1249 1.3732 12 1 2.4252 -2.5173 2.1660 13 6 1.6752 -4.4388 1.6168 14 7 1.1746 -5.1786 0.6515 15 14 1.9265 -5.1683 3.3181 16 1 1.1279 -4.4022 4.3081 17 1 1.4859 -6.5865 3.3185 18 1 3.3649 -5.0962 3.6800 19 1 -0.3633 -0.0005 -1.0277 20 1 -0.3634 -0.8898 0.5142 21 1 -0.3634 0.8902 0.5133 22 1 3.5327 -3.2694 -0.7768 23 1 0.9363 -6.1031 0.8228 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307302596.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:24 Heat of formation + Delta-G solvation = 27.897615 kcal Electronic energy + Delta-G solvation = -12745.911667 eV Core-core repulsion = 10256.118180 eV Total energy + Delta-G solvation = -2489.793486 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 260.985 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -44.38385 -37.96136 -35.79202 -34.34773 -33.18936 -31.40018 -28.91323 -28.62819 -25.24431 -23.19250 -22.04722 -19.28981 -18.39398 -17.61571 -16.78117 -16.72869 -15.80067 -15.13703 -14.62046 -14.37132 -13.85608 -13.62708 -13.18186 -13.09704 -12.78095 -12.45627 -12.32805 -12.12058 -11.81869 -11.09869 -10.96437 -10.71733 -10.58258 -9.95455 -8.19005 -6.45164 0.22888 0.43695 1.13802 1.44014 1.47105 1.51624 1.55393 2.39694 3.07421 3.48410 3.70300 3.86554 4.14679 4.27511 4.39479 4.57173 4.67026 5.31196 5.50383 5.62983 5.86635 6.59288 7.15273 7.20964 7.35162 8.85016 Molecular weight = 260.99amu Principal moments of inertia in cm(-1) A = 0.021611 B = 0.011902 C = 0.008988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.348069 B = 2351.948419 C = 3114.566559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.280 5.280 3 N -0.095 5.095 4 N -0.267 5.267 5 C -0.056 4.056 6 Br 0.053 6.947 7 C 0.028 3.972 8 C 0.296 3.704 9 H 0.069 0.931 10 O -0.568 6.568 11 C -0.571 4.571 12 H 0.053 0.947 13 C 0.046 3.954 14 N -0.886 5.886 15 Si 0.953 3.047 16 H -0.268 1.268 17 H -0.280 1.280 18 H -0.271 1.271 19 H 0.114 0.886 20 H 0.107 0.893 21 H 0.129 0.871 22 H 0.359 0.641 23 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.191 5.639 -0.492 5.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.075 5.075 3 N -0.076 5.076 4 N -0.136 5.136 5 C -0.272 4.272 6 Br 0.133 6.867 7 C -0.109 4.109 8 C 0.236 3.764 9 H 0.086 0.914 10 O -0.374 6.374 11 C -0.609 4.609 12 H 0.072 0.928 13 C -0.159 4.159 14 N -0.522 5.522 15 Si 0.777 3.223 16 H -0.193 1.193 17 H -0.205 1.205 18 H -0.196 1.196 19 H 0.132 0.868 20 H 0.126 0.874 21 H 0.147 0.853 22 H 0.209 0.791 23 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.080 6.555 -0.831 6.695 hybrid contribution 0.194 -1.173 0.999 1.553 sum 1.274 5.382 0.168 5.533 Atomic orbital electron populations 1.22782 0.69590 1.07708 1.06991 1.47414 1.10969 1.03166 1.45929 1.78062 0.95785 1.12332 1.21395 1.74966 1.10905 1.10593 1.17121 1.23165 0.93895 0.92831 1.17327 1.96538 1.27323 1.64732 1.98060 1.23828 0.90268 0.95004 1.01812 1.17916 0.92200 0.76800 0.89444 0.91379 1.86561 1.22388 1.74787 1.53655 1.21428 1.46537 0.97484 0.95407 0.92842 1.25637 0.93126 0.96978 1.00179 1.70130 1.40230 1.08387 1.33407 0.85701 0.79031 0.77511 0.80020 1.19319 1.20548 1.19585 0.86798 0.87400 0.85281 0.79119 0.92294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.65 11.01 127.77 1.41 3.06 14 2 N -0.28 -10.20 3.74 -355.63 -1.33 -11.53 14 3 N -0.10 -3.71 13.16 37.02 0.49 -3.22 14 4 N -0.27 -11.26 12.41 -54.18 -0.67 -11.93 14 5 C -0.06 -2.37 7.66 83.74 0.64 -1.73 14 6 Br 0.05 1.95 31.27 -20.37 -0.64 1.31 14 7 C 0.03 1.17 5.91 41.36 0.24 1.42 14 8 C 0.30 14.03 3.02 29.10 0.09 14.12 14 9 H 0.07 3.28 7.19 -2.39 -0.02 3.26 14 10 O -0.57 -28.41 12.69 -148.98 -1.89 -30.30 14 11 C -0.57 -28.73 8.75 25.60 0.22 -28.51 14 12 H 0.05 2.73 7.74 -2.91 -0.02 2.71 14 13 C 0.05 2.33 5.40 84.66 0.46 2.78 14 14 N -0.89 -47.70 12.84 21.45 0.28 -47.42 14 15 Si 0.95 40.26 29.54 68.60 2.03 42.29 14 16 H -0.27 -10.99 7.11 99.48 0.71 -10.28 14 17 H -0.28 -11.59 7.11 99.48 0.71 -10.89 14 18 H -0.27 -11.35 7.11 99.48 0.71 -10.65 14 19 H 0.11 2.22 8.14 -2.38 -0.02 2.20 14 20 H 0.11 2.68 7.39 -2.39 -0.02 2.66 14 21 H 0.13 2.32 8.14 -2.39 -0.02 2.30 14 22 H 0.36 16.70 5.88 -74.06 -0.44 16.27 14 23 H 0.27 13.69 8.31 -92.70 -0.77 12.92 14 Total: -1.00 -61.31 231.50 2.14 -59.17 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: 0.82 Total: 10.50 kcal Atomic # 6 Polarization: -11.92 SS G_CDS: 3.06 Total: -8.86 kcal Atomic # 7 Polarization: -72.87 SS G_CDS: -1.24 Total: -74.11 kcal Atomic # 8 Polarization: -28.41 SS G_CDS: -1.89 Total: -30.30 kcal Atomic # 14 Polarization: 40.26 SS G_CDS: 2.03 Total: 42.29 kcal Atomic # 35 Polarization: 1.95 SS G_CDS: -0.64 Total: 1.31 kcal Total: -61.31 2.14 -59.17 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307302596.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.067 kcal (2) G-P(sol) polarization free energy of solvation -61.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds