Wall clock time and date at job start Mon Mar 30 2020 04:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 110.06356 * 2 1 4 4 C 1.53997 * 109.91869 * 121.20215 * 2 1 3 5 5 H 1.08998 * 110.31043 * 239.49589 * 4 2 1 6 6 N 1.46504 * 110.30570 * 1.66468 * 4 2 1 7 7 C 1.36937 * 120.00040 * 204.99766 * 6 4 2 8 8 H 1.08007 * 119.99548 * 359.97438 * 7 6 4 9 9 C 1.38806 * 120.00261 * 179.97438 * 7 6 4 10 10 N 1.31620 * 119.99863 * 179.97438 * 9 7 6 11 11 Si 1.86802 * 119.99960 * 0.02562 * 9 7 6 12 12 H 1.48506 * 109.47023 * 89.99439 * 11 9 7 13 13 H 1.48499 * 109.47275 * 209.99449 * 11 9 7 14 14 H 1.48502 * 109.46711 * 329.99888 * 11 9 7 15 15 C 1.54598 * 105.13783 * 120.57719 * 4 2 1 16 16 C 1.54936 * 102.92150 * 21.96088 * 15 4 2 17 17 N 1.47904 * 109.91950 * 238.79705 * 2 1 3 18 18 C 1.46890 * 111.00086 * 94.80033 * 17 2 1 19 19 C 1.50702 * 109.47198 * 170.00151 * 18 17 2 20 20 C 1.38234 * 119.99895 * 269.72876 * 19 18 17 21 21 C 1.38240 * 120.00062 * 180.32314 * 20 19 18 22 22 C 1.38234 * 119.99686 * 359.92348 * 21 20 19 23 23 C 1.38234 * 120.00244 * 0.07174 * 22 21 20 24 24 C 1.38230 * 119.99864 * 359.95693 * 23 22 21 25 25 H 1.09004 * 109.47119 * 179.75066 * 1 2 3 26 26 H 1.09002 * 109.46990 * 299.75104 * 1 2 3 27 27 H 1.08999 * 109.46972 * 59.75187 * 1 2 3 28 28 H 0.97000 * 120.00087 * 25.00029 * 6 4 2 29 29 H 0.96999 * 119.99287 * 180.02562 * 10 9 7 30 30 H 1.09003 * 110.72103 * 140.31760 * 15 4 2 31 31 H 1.09000 * 110.72214 * 263.60049 * 15 4 2 32 32 H 1.08995 * 110.66865 * 204.15016 * 16 15 4 33 33 H 1.09008 * 110.66676 * 81.01843 * 16 15 4 34 34 H 1.09003 * 109.47170 * 50.00382 * 18 17 2 35 35 H 1.09001 * 109.47716 * 290.00434 * 18 17 2 36 36 H 1.08001 * 120.00279 * 0.27436 * 20 19 18 37 37 H 1.07997 * 119.99831 * 179.97438 * 21 20 19 38 38 H 1.07999 * 119.99747 * 180.02562 * 22 21 20 39 39 H 1.08002 * 119.99744 * 179.97438 * 23 22 21 40 40 H 1.08000 * 120.00356 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9039 1.0239 0.0000 4 6 2.0546 -0.7501 1.2384 5 1 2.6714 -0.0894 1.8477 6 7 0.9366 -1.2742 2.0268 7 6 1.0943 -1.5092 3.3666 8 1 2.0432 -1.3085 3.8420 9 6 0.0349 -2.0053 4.1137 10 7 0.1868 -2.2316 5.4014 11 14 -1.6059 -2.3532 3.2913 12 1 -1.6242 -3.7529 2.7955 13 1 -2.7026 -2.1618 4.2741 14 1 -1.7951 -1.4214 2.1506 15 6 2.9059 -1.9117 0.6762 16 6 3.2681 -1.4185 -0.7472 17 7 2.0339 -0.7204 -1.1894 18 6 2.3211 0.2123 -2.2872 19 6 3.0561 -0.5141 -3.3842 20 6 4.4376 -0.5604 -3.3774 21 6 5.1121 -1.2210 -4.3873 22 6 4.4048 -1.8366 -5.4030 23 6 3.0232 -1.7904 -5.4097 24 6 2.3489 -1.1294 -4.4002 25 1 -0.3633 -1.0277 -0.0045 26 1 -0.3633 0.5100 0.8922 27 1 -0.3633 0.5177 -0.8878 28 1 0.0846 -1.4549 1.5997 29 1 -0.5535 -2.5787 5.9233 30 1 3.8053 -2.0557 1.2751 31 1 2.3214 -2.8305 0.6290 32 1 3.4888 -2.2615 -1.4019 33 1 4.1098 -0.7266 -0.7120 34 1 2.9383 1.0307 -1.9166 35 1 1.3856 0.6114 -2.6792 36 1 4.9902 -0.0798 -2.5837 37 1 6.1914 -1.2568 -4.3822 38 1 4.9317 -2.3531 -6.1917 39 1 2.4707 -2.2711 -6.2035 40 1 1.2696 -1.0929 -4.4056 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307416371.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:16 Heat of formation + Delta-G solvation = 53.929813 kcal Electronic energy + Delta-G solvation = -19499.340281 eV Core-core repulsion = 16700.461365 eV Total energy + Delta-G solvation = -2798.878915 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.83307 -38.50703 -34.76042 -32.53222 -31.19947 -30.91062 -30.75897 -28.70464 -25.51856 -24.72724 -22.91184 -22.63655 -21.50622 -20.31300 -18.93983 -17.85055 -16.80539 -15.74534 -15.48163 -15.24175 -14.98592 -14.23256 -14.14083 -13.68759 -13.50775 -13.09291 -13.05473 -12.79376 -12.23848 -12.20106 -12.03600 -11.52063 -11.28091 -11.25897 -11.02012 -10.89773 -10.78290 -10.70457 -10.39447 -10.23458 -9.92457 -9.50468 -9.00267 -8.92659 -8.83607 -8.17369 -7.22690 -5.75139 -3.09854 1.24374 1.31983 3.39482 3.43291 3.47573 3.64243 4.30886 4.61370 4.65980 4.76321 4.89666 5.00238 5.07813 5.22405 5.28308 5.39115 5.42047 5.52869 5.58065 5.58658 5.66387 5.77430 5.84010 5.91943 5.96332 6.08551 6.19636 6.23148 6.32063 6.37214 6.40807 6.43910 6.55579 6.66108 6.74907 6.85202 6.90764 7.25379 7.30191 8.02538 8.44715 9.23911 9.96382 10.17154 11.43381 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.036872 B = 0.004527 C = 0.004368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.199649 B = 6183.550775 C = 6409.285197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.054 3.946 3 H 0.050 0.950 4 C 0.179 3.821 5 H 0.061 0.939 6 N -0.743 5.743 7 C -0.244 4.244 8 H 0.089 0.911 9 C 0.005 3.995 10 N -0.935 5.935 11 Si 0.880 3.120 12 H -0.284 1.284 13 H -0.291 1.291 14 H -0.274 1.274 15 C -0.143 4.143 16 C 0.039 3.961 17 N -0.506 5.506 18 C 0.084 3.916 19 C -0.074 4.074 20 C -0.113 4.113 21 C -0.122 4.122 22 C -0.125 4.125 23 C -0.123 4.123 24 C -0.100 4.100 25 H 0.061 0.939 26 H 0.066 0.934 27 H 0.043 0.957 28 H 0.368 0.632 29 H 0.259 0.741 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.038 0.962 34 H 0.042 0.958 35 H 0.081 0.919 36 H 0.119 0.881 37 H 0.119 0.881 38 H 0.118 0.882 39 H 0.119 0.881 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.098 4.212 -21.279 22.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.055 4.055 3 H 0.068 0.932 4 C 0.068 3.932 5 H 0.079 0.921 6 N -0.388 5.388 7 C -0.373 4.373 8 H 0.107 0.893 9 C -0.190 4.190 10 N -0.583 5.583 11 Si 0.710 3.290 12 H -0.211 1.211 13 H -0.218 1.218 14 H -0.200 1.200 15 C -0.184 4.184 16 C -0.089 4.089 17 N -0.230 5.230 18 C -0.044 4.044 19 C -0.074 4.074 20 C -0.131 4.131 21 C -0.140 4.140 22 C -0.143 4.143 23 C -0.141 4.141 24 C -0.119 4.119 25 H 0.080 0.920 26 H 0.085 0.915 27 H 0.062 0.938 28 H 0.204 0.796 29 H 0.069 0.931 30 H 0.082 0.918 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.056 0.944 34 H 0.060 0.940 35 H 0.099 0.901 36 H 0.137 0.863 37 H 0.137 0.863 38 H 0.136 0.864 39 H 0.137 0.863 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 6.757 3.849 -21.206 22.587 hybrid contribution -0.523 0.193 -0.217 0.598 sum 6.234 4.042 -21.424 22.675 Atomic orbital electron populations 1.21646 0.94167 1.02135 1.00760 1.22723 0.96635 0.95779 0.90364 0.93208 1.20974 0.89557 0.92774 0.89923 0.92094 1.43042 1.10437 1.78322 1.06976 1.19106 0.99102 1.36076 0.83061 0.89339 1.24642 0.97670 1.01340 0.95393 1.69702 1.31776 1.51265 1.05531 0.86633 0.85223 0.78452 0.78715 1.21058 1.21764 1.20032 1.23258 1.00417 1.01177 0.93537 1.23195 0.90781 0.97764 0.97174 1.64841 1.26717 1.25435 1.06022 1.21250 0.99003 0.93169 0.90985 1.19813 0.93457 0.98415 0.95742 1.21105 0.93870 0.99741 0.98432 1.21099 0.99733 0.98378 0.94829 1.21119 0.94393 1.00015 0.98803 1.21141 0.94490 0.99657 0.98810 1.21050 1.00001 0.96990 0.93811 0.92045 0.91489 0.93799 0.79571 0.93101 0.91829 0.90596 0.90843 0.94381 0.94017 0.90080 0.86344 0.86277 0.86404 0.86257 0.85955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.17 8.23 37.16 0.31 -1.86 16 2 C 0.05 0.88 3.08 -66.64 -0.21 0.68 16 3 H 0.05 0.76 7.57 -51.93 -0.39 0.36 16 4 C 0.18 3.48 3.62 -66.57 -0.24 3.24 16 5 H 0.06 1.22 8.09 -51.93 -0.42 0.80 16 6 N -0.74 -17.60 4.36 -52.11 -0.23 -17.83 16 7 C -0.24 -6.86 10.44 -15.06 -0.16 -7.02 16 8 H 0.09 2.67 8.06 -52.48 -0.42 2.24 16 9 C 0.01 0.15 5.50 -17.43 -0.10 0.06 16 10 N -0.93 -29.48 13.97 55.49 0.78 -28.70 16 11 Si 0.88 22.24 27.74 -169.99 -4.71 17.52 16 12 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 13 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 14 H -0.27 -6.47 6.52 56.52 0.37 -6.10 16 15 C -0.14 -2.55 6.78 -24.87 -0.17 -2.71 16 16 C 0.04 0.57 4.97 -1.90 -0.01 0.56 16 17 N -0.51 -7.52 5.02 -224.00 -1.12 -8.64 16 18 C 0.08 1.03 5.19 -4.98 -0.03 1.01 16 19 C -0.07 -0.87 4.59 -104.62 -0.48 -1.35 16 20 C -0.11 -1.23 8.36 -39.58 -0.33 -1.56 16 21 C -0.12 -1.21 10.05 -39.58 -0.40 -1.60 16 22 C -0.13 -1.19 10.05 -39.58 -0.40 -1.59 16 23 C -0.12 -1.23 10.05 -39.59 -0.40 -1.62 16 24 C -0.10 -1.12 9.70 -39.59 -0.38 -1.50 16 25 H 0.06 1.13 6.79 -51.93 -0.35 0.78 16 26 H 0.07 1.21 7.85 -51.93 -0.41 0.80 16 27 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.37 8.61 2.92 -40.82 -0.12 8.49 16 29 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 30 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 31 H 0.08 1.50 8.06 -51.93 -0.42 1.08 16 32 H 0.07 1.08 7.74 -51.93 -0.40 0.68 16 33 H 0.04 0.51 7.10 -51.92 -0.37 0.14 16 34 H 0.04 0.49 7.75 -51.93 -0.40 0.09 16 35 H 0.08 0.95 8.09 -51.93 -0.42 0.53 16 36 H 0.12 1.19 7.40 -52.49 -0.39 0.80 16 37 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 38 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 39 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 40 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 316.66 15.07 4.77 4.77 Total: -1.00 -30.92 316.66 -9.73 -40.65 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -6.22 Total: 7.51 kcal Atomic # 6 Polarization: -12.29 SS G_CDS: -2.99 Total: -15.28 kcal Atomic # 7 Polarization: -54.60 SS G_CDS: -0.58 Total: -55.17 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.71 Total: 17.52 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -30.92 -9.73 -40.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307416371.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.579 kcal (2) G-P(sol) polarization free energy of solvation -30.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds