Wall clock time and date at job start Mon Mar 30 2020 04:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 110.06356 * 2 1 4 4 C 1.53997 * 109.91869 * 121.20215 * 2 1 3 5 5 H 1.08998 * 110.31043 * 239.49589 * 4 2 1 6 6 N 1.46504 * 110.30570 * 1.66468 * 4 2 1 7 7 C 1.36937 * 120.00040 * 204.99766 * 6 4 2 8 8 H 1.08007 * 119.99548 * 359.97438 * 7 6 4 9 9 C 1.38806 * 120.00261 * 179.97438 * 7 6 4 10 10 N 1.31620 * 119.99863 * 179.97438 * 9 7 6 11 11 Si 1.86802 * 119.99960 * 0.02562 * 9 7 6 12 12 H 1.48506 * 109.47023 * 89.99439 * 11 9 7 13 13 H 1.48499 * 109.47275 * 209.99449 * 11 9 7 14 14 H 1.48502 * 109.46711 * 329.99888 * 11 9 7 15 15 C 1.54598 * 105.13783 * 120.57719 * 4 2 1 16 16 C 1.54936 * 102.92150 * 21.96088 * 15 4 2 17 17 N 1.47904 * 109.91950 * 238.79705 * 2 1 3 18 18 C 1.46890 * 111.00086 * 94.80033 * 17 2 1 19 19 C 1.50702 * 109.47198 * 170.00151 * 18 17 2 20 20 C 1.38234 * 119.99895 * 269.72876 * 19 18 17 21 21 C 1.38240 * 120.00062 * 180.32314 * 20 19 18 22 22 C 1.38234 * 119.99686 * 359.92348 * 21 20 19 23 23 C 1.38234 * 120.00244 * 0.07174 * 22 21 20 24 24 C 1.38230 * 119.99864 * 359.95693 * 23 22 21 25 25 H 1.09004 * 109.47119 * 179.75066 * 1 2 3 26 26 H 1.09002 * 109.46990 * 299.75104 * 1 2 3 27 27 H 1.08999 * 109.46972 * 59.75187 * 1 2 3 28 28 H 0.97000 * 120.00087 * 25.00029 * 6 4 2 29 29 H 0.96999 * 119.99287 * 180.02562 * 10 9 7 30 30 H 1.09003 * 110.72103 * 140.31760 * 15 4 2 31 31 H 1.09000 * 110.72214 * 263.60049 * 15 4 2 32 32 H 1.08995 * 110.66865 * 204.15016 * 16 15 4 33 33 H 1.09008 * 110.66676 * 81.01843 * 16 15 4 34 34 H 1.09003 * 109.47170 * 50.00382 * 18 17 2 35 35 H 1.09001 * 109.47716 * 290.00434 * 18 17 2 36 36 H 1.08001 * 120.00279 * 0.27436 * 20 19 18 37 37 H 1.07997 * 119.99831 * 179.97438 * 21 20 19 38 38 H 1.07999 * 119.99747 * 180.02562 * 22 21 20 39 39 H 1.08002 * 119.99744 * 179.97438 * 23 22 21 40 40 H 1.08000 * 120.00356 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9039 1.0239 0.0000 4 6 2.0546 -0.7501 1.2384 5 1 2.6714 -0.0894 1.8477 6 7 0.9366 -1.2742 2.0268 7 6 1.0943 -1.5092 3.3666 8 1 2.0432 -1.3085 3.8420 9 6 0.0349 -2.0053 4.1137 10 7 0.1868 -2.2316 5.4014 11 14 -1.6059 -2.3532 3.2913 12 1 -1.6242 -3.7529 2.7955 13 1 -2.7026 -2.1618 4.2741 14 1 -1.7951 -1.4214 2.1506 15 6 2.9059 -1.9117 0.6762 16 6 3.2681 -1.4185 -0.7472 17 7 2.0339 -0.7204 -1.1894 18 6 2.3211 0.2123 -2.2872 19 6 3.0561 -0.5141 -3.3842 20 6 4.4376 -0.5604 -3.3774 21 6 5.1121 -1.2210 -4.3873 22 6 4.4048 -1.8366 -5.4030 23 6 3.0232 -1.7904 -5.4097 24 6 2.3489 -1.1294 -4.4002 25 1 -0.3633 -1.0277 -0.0045 26 1 -0.3633 0.5100 0.8922 27 1 -0.3633 0.5177 -0.8878 28 1 0.0846 -1.4549 1.5997 29 1 -0.5535 -2.5787 5.9233 30 1 3.8053 -2.0557 1.2751 31 1 2.3214 -2.8305 0.6290 32 1 3.4888 -2.2615 -1.4019 33 1 4.1098 -0.7266 -0.7120 34 1 2.9383 1.0307 -1.9166 35 1 1.3856 0.6114 -2.6792 36 1 4.9902 -0.0798 -2.5837 37 1 6.1914 -1.2568 -4.3822 38 1 4.9317 -2.3531 -6.1917 39 1 2.4707 -2.2711 -6.2035 40 1 1.2696 -1.0929 -4.4056 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307416371.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:16 Heat of formation + Delta-G solvation = 35.024293 kcal Electronic energy + Delta-G solvation = -19500.160086 eV Core-core repulsion = 16700.461365 eV Total energy + Delta-G solvation = -2799.698720 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.88333 -39.57858 -36.37945 -34.12354 -32.65110 -32.22279 -31.69619 -30.07990 -26.94012 -25.84292 -24.83126 -23.47517 -22.48445 -21.43653 -20.48925 -19.84422 -17.63785 -17.00594 -16.82975 -16.29020 -16.14929 -15.91717 -15.42671 -15.02708 -14.80509 -14.32111 -14.09353 -13.97484 -13.70930 -13.45157 -13.34233 -12.96145 -12.79145 -12.66577 -12.41859 -12.33974 -12.19830 -11.91806 -11.76447 -11.70444 -11.58416 -11.41488 -10.96950 -9.75493 -9.70423 -9.31937 -9.24388 -8.01914 -5.33893 0.46823 0.56449 1.37208 1.39863 1.46965 2.48500 2.79622 3.21697 3.29049 3.57495 3.71491 3.87606 3.99755 4.09387 4.20820 4.23341 4.29656 4.35370 4.45572 4.48262 4.65868 4.68621 4.72517 4.78300 4.84513 4.90901 4.94127 5.08429 5.16161 5.20112 5.22546 5.36990 5.37983 5.61403 5.67517 5.75902 5.78093 5.98130 6.13403 6.19024 6.24124 7.09319 7.86399 8.06149 9.19908 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.036872 B = 0.004527 C = 0.004368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.199649 B = 6183.550775 C = 6409.285197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.063 3.937 3 H 0.067 0.933 4 C 0.166 3.834 5 H 0.051 0.949 6 N -0.745 5.745 7 C -0.228 4.228 8 H 0.056 0.944 9 C -0.062 4.062 10 N -0.985 5.985 11 Si 0.945 3.055 12 H -0.282 1.282 13 H -0.294 1.294 14 H -0.248 1.248 15 C -0.140 4.140 16 C 0.054 3.946 17 N -0.512 5.512 18 C 0.086 3.914 19 C -0.089 4.089 20 C -0.123 4.123 21 C -0.128 4.128 22 C -0.128 4.128 23 C -0.130 4.130 24 C -0.114 4.114 25 H 0.044 0.956 26 H 0.051 0.949 27 H 0.071 0.929 28 H 0.371 0.629 29 H 0.257 0.743 30 H 0.062 0.938 31 H 0.054 0.946 32 H 0.077 0.923 33 H 0.055 0.945 34 H 0.050 0.950 35 H 0.089 0.911 36 H 0.124 0.876 37 H 0.138 0.862 38 H 0.140 0.860 39 H 0.137 0.863 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.188 4.671 -24.368 25.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.046 4.046 3 H 0.085 0.915 4 C 0.056 3.944 5 H 0.070 0.930 6 N -0.391 5.391 7 C -0.359 4.359 8 H 0.074 0.926 9 C -0.253 4.253 10 N -0.635 5.635 11 Si 0.773 3.227 12 H -0.209 1.209 13 H -0.221 1.221 14 H -0.172 1.172 15 C -0.181 4.181 16 C -0.073 4.073 17 N -0.237 5.237 18 C -0.041 4.041 19 C -0.089 4.089 20 C -0.142 4.142 21 C -0.146 4.146 22 C -0.146 4.146 23 C -0.148 4.148 24 C -0.133 4.133 25 H 0.063 0.937 26 H 0.070 0.930 27 H 0.090 0.910 28 H 0.208 0.792 29 H 0.066 0.934 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.095 0.905 33 H 0.074 0.926 34 H 0.068 0.932 35 H 0.107 0.893 36 H 0.142 0.858 37 H 0.156 0.844 38 H 0.158 0.842 39 H 0.155 0.845 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 6.874 4.332 -24.360 25.679 hybrid contribution -0.405 0.065 0.684 0.797 sum 6.470 4.397 -23.676 24.935 Atomic orbital electron populations 1.21594 0.94301 1.01168 1.01395 1.22560 0.96525 0.96155 0.89334 0.91502 1.21232 0.88680 0.93529 0.90911 0.93044 1.43034 1.11884 1.78589 1.05560 1.19074 0.97614 1.34248 0.84971 0.92567 1.25414 1.01712 1.02215 0.95970 1.69877 1.32940 1.53355 1.07374 0.85565 0.80167 0.78680 0.78323 1.20868 1.22106 1.17245 1.23109 0.99677 0.99514 0.95803 1.23049 0.91362 0.98193 0.94724 1.64815 1.26888 1.26124 1.05848 1.21278 0.99774 0.92865 0.90188 1.19815 0.93864 0.99309 0.95950 1.21261 0.93733 1.00100 0.99078 1.21398 1.00884 0.97845 0.94509 1.21462 0.94439 0.99548 0.99176 1.21425 0.95017 0.99363 0.98969 1.21217 1.00366 0.97422 0.94254 0.93716 0.93007 0.90976 0.79190 0.93413 0.91917 0.92755 0.90460 0.92638 0.93198 0.89296 0.85782 0.84391 0.84192 0.84473 0.85699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.98 8.23 71.98 0.59 -3.38 16 2 C 0.06 1.94 3.08 45.06 0.14 2.08 16 3 H 0.07 1.85 7.57 -2.39 -0.02 1.83 16 4 C 0.17 6.38 3.62 45.87 0.17 6.55 16 5 H 0.05 2.06 8.09 -2.39 -0.02 2.04 16 6 N -0.75 -35.24 4.36 -318.77 -1.39 -36.63 16 7 C -0.23 -13.13 10.44 84.03 0.88 -12.25 16 8 H 0.06 3.54 8.06 -2.91 -0.02 3.51 16 9 C -0.06 -3.69 5.50 84.86 0.47 -3.23 16 10 N -0.98 -63.90 13.97 21.65 0.30 -63.60 16 11 Si 0.95 46.23 27.74 68.60 1.90 48.13 16 12 H -0.28 -13.65 7.11 99.48 0.71 -12.95 16 13 H -0.29 -14.48 7.11 99.48 0.71 -13.78 16 14 H -0.25 -10.91 6.52 99.48 0.65 -10.26 16 15 C -0.14 -4.93 6.78 31.80 0.22 -4.71 16 16 C 0.05 1.50 4.97 86.65 0.43 1.93 16 17 N -0.51 -14.01 5.02 -862.61 -4.33 -18.34 16 18 C 0.09 1.88 5.19 85.56 0.44 2.33 16 19 C -0.09 -1.87 4.59 -19.87 -0.09 -1.96 16 20 C -0.12 -2.37 8.36 22.27 0.19 -2.18 16 21 C -0.13 -2.17 10.05 22.27 0.22 -1.94 16 22 C -0.13 -2.06 10.05 22.27 0.22 -1.84 16 23 C -0.13 -2.25 10.05 22.27 0.22 -2.03 16 24 C -0.11 -2.29 9.70 22.27 0.22 -2.07 16 25 H 0.04 1.55 6.79 -2.38 -0.02 1.53 16 26 H 0.05 1.77 7.85 -2.39 -0.02 1.75 16 27 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.37 17.02 2.92 -92.71 -0.27 16.75 16 29 H 0.26 15.91 8.31 -92.71 -0.77 15.14 16 30 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.05 2.14 8.06 -2.39 -0.02 2.12 16 32 H 0.08 2.11 7.74 -2.39 -0.02 2.09 16 33 H 0.06 1.35 7.10 -2.38 -0.02 1.33 16 34 H 0.05 1.02 7.75 -2.39 -0.02 1.00 16 35 H 0.09 1.80 8.09 -2.39 -0.02 1.79 16 36 H 0.12 2.16 7.40 -2.91 -0.02 2.14 16 37 H 0.14 1.73 8.06 -2.91 -0.02 1.70 16 38 H 0.14 1.56 8.06 -2.91 -0.02 1.54 16 39 H 0.14 1.79 8.06 -2.91 -0.02 1.77 16 40 H 0.13 2.34 8.06 -2.91 -0.02 2.32 16 Total: -1.00 -67.30 316.66 1.48 -65.83 By element: Atomic # 1 Polarization: 26.65 SS G_CDS: 0.68 Total: 27.33 kcal Atomic # 6 Polarization: -27.03 SS G_CDS: 4.31 Total: -22.72 kcal Atomic # 7 Polarization: -113.15 SS G_CDS: -5.42 Total: -118.57 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 1.90 Total: 48.13 kcal Total: -67.30 1.48 -65.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307416371.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.851 kcal (2) G-P(sol) polarization free energy of solvation -67.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds