Wall clock time and date at job start Mon Mar 30 2020 04:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46906 * 109.47683 * 2 1 4 4 C 1.47961 * 111.00082 * 169.99986 * 3 2 1 5 5 C 1.53944 * 86.17626 * 222.41888 * 4 3 2 6 6 N 1.46897 * 113.72990 * 138.08430 * 5 4 3 7 7 C 1.46896 * 110.99699 * 155.00039 * 6 5 4 8 8 H 1.09004 * 109.47452 * 326.03936 * 7 6 5 9 9 C 1.50695 * 109.47652 * 86.04126 * 7 6 5 10 10 H 1.08005 * 120.00354 * 60.71120 * 9 7 6 11 11 C 1.37878 * 120.00184 * 240.71871 * 9 7 6 12 12 N 1.31520 * 120.00269 * 174.87219 * 11 9 7 13 13 Si 1.86801 * 120.00020 * 354.86536 * 11 9 7 14 14 H 1.48508 * 109.47084 * 84.82272 * 13 11 9 15 15 H 1.48493 * 109.47583 * 204.82513 * 13 11 9 16 16 H 1.48499 * 109.47301 * 324.82835 * 13 11 9 17 17 C 1.50707 * 109.47123 * 206.04213 * 7 6 5 18 18 C 1.38230 * 119.99624 * 315.14337 * 17 7 6 19 19 C 1.38235 * 120.00033 * 179.78880 * 18 17 7 20 20 C 1.38236 * 119.99523 * 0.43998 * 19 18 17 21 21 C 1.38235 * 120.00256 * 359.81262 * 20 19 18 22 22 C 1.38229 * 119.99909 * 359.97438 * 21 20 19 23 23 C 1.47961 * 110.99563 * 70.63483 * 3 2 1 24 24 H 1.09004 * 109.46719 * 300.00310 * 1 2 3 25 25 H 1.09003 * 109.46596 * 59.99928 * 1 2 3 26 26 H 1.09000 * 109.47311 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47402 * 240.00000 * 2 1 3 28 28 H 1.09001 * 109.47236 * 120.00457 * 2 1 3 29 29 H 1.09001 * 113.75603 * 108.10521 * 4 3 2 30 30 H 1.08997 * 113.85604 * 336.74612 * 4 3 2 31 31 H 1.09006 * 113.72748 * 269.25805 * 5 4 3 32 32 H 1.00906 * 110.99842 * 278.94303 * 6 5 4 33 33 H 0.96996 * 120.00037 * 180.02562 * 12 11 9 34 34 H 1.08003 * 120.00045 * 0.02562 * 18 17 7 35 35 H 1.08001 * 120.00358 * 180.27665 * 19 18 17 36 36 H 1.08009 * 119.99530 * 179.83911 * 20 19 18 37 37 H 1.08002 * 119.99891 * 179.97438 * 21 20 19 38 38 H 1.07997 * 119.99980 * 180.02562 * 22 21 20 39 39 H 1.08998 * 113.76155 * 23.27553 * 23 3 2 40 40 H 1.08998 * 113.76103 * 251.89908 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3850 0.0000 4 6 3.4791 1.4313 0.2399 5 6 3.1839 2.6196 1.1730 6 7 3.9513 2.5927 2.4253 7 6 4.1041 3.9450 2.9782 8 1 4.1858 4.6638 2.1629 9 6 2.9034 4.2803 3.8249 10 1 2.6688 3.6796 4.6913 11 6 2.1042 5.3538 3.4936 12 7 1.0013 5.5865 4.1712 13 14 2.5880 6.4779 2.0822 14 1 2.1053 5.9007 0.8019 15 1 1.9769 7.8162 2.2834 16 1 4.0664 6.6103 2.0392 17 6 5.3487 4.0034 3.8260 18 6 5.6229 2.9873 4.7220 19 6 6.7667 3.0386 5.4966 20 6 7.6317 4.1108 5.3814 21 6 7.3549 5.1295 4.4891 22 6 6.2133 5.0760 3.7115 23 6 1.7647 2.0375 1.3032 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 4.0608 1.6996 -0.6421 30 1 3.8691 0.5541 0.7559 31 1 3.2185 3.5882 0.6742 32 1 3.5243 1.9733 3.0978 33 1 0.4389 6.3415 3.9378 34 1 4.9454 2.1512 4.8143 35 1 6.9833 2.2425 6.1935 36 1 8.5241 4.1522 5.9885 37 1 8.0305 5.9674 4.3995 38 1 5.9972 5.8717 3.0140 39 1 1.6517 1.3369 2.1305 40 1 0.9768 2.7900 1.2709 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393638087.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:00 Heat of formation + Delta-G solvation = 58.536110 kcal Electronic energy + Delta-G solvation = -19621.974698 eV Core-core repulsion = 16823.295527 eV Total energy + Delta-G solvation = -2798.679171 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.63546 -38.48597 -35.13673 -32.62268 -31.76142 -30.23602 -29.79529 -26.90847 -25.74927 -25.04085 -22.74940 -21.94893 -21.05474 -19.86396 -19.37958 -17.14701 -16.24480 -15.61781 -15.51590 -14.89900 -14.54893 -14.28671 -14.01341 -13.56401 -13.08967 -12.87055 -12.74305 -12.42937 -12.23961 -12.10114 -11.85841 -11.74988 -11.60953 -11.17496 -11.03413 -10.96135 -10.63754 -10.45547 -10.21780 -9.94630 -9.86878 -9.45382 -8.77437 -8.53157 -8.22004 -7.92825 -7.40392 -6.27380 -4.29392 2.11195 2.17664 3.16402 3.23426 3.26166 4.23625 4.28619 4.54123 4.90377 5.10543 5.13621 5.22352 5.34792 5.51548 5.53350 5.57511 5.63950 5.71497 5.77088 5.83077 5.94214 6.05004 6.10477 6.12800 6.22168 6.25738 6.32690 6.39483 6.43493 6.58579 6.67974 6.73974 6.83231 7.14492 7.22447 7.36432 7.40869 7.51748 7.76162 7.92193 8.19916 8.43038 8.76980 9.34603 10.84840 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.016525 B = 0.007229 C = 0.005739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.972245 B = 3872.569794 C = 4877.737725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.020 3.980 3 N -0.487 5.487 4 C 0.006 3.994 5 C 0.081 3.919 6 N -0.675 5.675 7 C 0.205 3.795 8 H 0.051 0.949 9 C -0.534 4.534 10 H 0.077 0.923 11 C 0.083 3.917 12 N -0.886 5.886 13 Si 0.866 3.134 14 H -0.270 1.270 15 H -0.286 1.286 16 H -0.263 1.263 17 C -0.016 4.016 18 C -0.104 4.104 19 C -0.126 4.126 20 C -0.151 4.151 21 C -0.123 4.123 22 C -0.132 4.132 23 C -0.010 4.010 24 H 0.056 0.944 25 H 0.059 0.941 26 H 0.053 0.947 27 H 0.068 0.932 28 H 0.037 0.963 29 H 0.081 0.919 30 H 0.069 0.931 31 H 0.091 0.909 32 H 0.337 0.663 33 H 0.267 0.733 34 H 0.114 0.886 35 H 0.109 0.891 36 H 0.108 0.892 37 H 0.109 0.891 38 H 0.111 0.889 39 H 0.069 0.931 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.661 -6.954 -4.444 10.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.109 4.109 3 N -0.211 5.211 4 C -0.124 4.124 5 C -0.031 4.031 6 N -0.304 5.304 7 C 0.097 3.903 8 H 0.069 0.931 9 C -0.572 4.572 10 H 0.095 0.905 11 C -0.122 4.122 12 N -0.522 5.522 13 Si 0.694 3.306 14 H -0.195 1.195 15 H -0.212 1.212 16 H -0.188 1.188 17 C -0.017 4.017 18 C -0.123 4.123 19 C -0.144 4.144 20 C -0.169 4.169 21 C -0.141 4.141 22 C -0.151 4.151 23 C -0.140 4.140 24 H 0.075 0.925 25 H 0.078 0.922 26 H 0.073 0.927 27 H 0.087 0.913 28 H 0.055 0.945 29 H 0.099 0.901 30 H 0.087 0.913 31 H 0.109 0.891 32 H 0.155 0.845 33 H 0.077 0.923 34 H 0.132 0.868 35 H 0.127 0.873 36 H 0.126 0.874 37 H 0.127 0.873 38 H 0.129 0.871 39 H 0.087 0.913 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 5.821 -6.563 -5.340 10.270 hybrid contribution -0.577 0.483 0.483 0.894 sum 5.243 -6.080 -4.857 9.384 Atomic orbital electron populations 1.21720 0.95094 1.01078 1.02601 1.22529 0.96343 0.91547 1.00500 1.68498 1.07198 1.14010 1.31367 1.24160 0.90082 0.99063 0.99092 1.23155 0.90328 0.97579 0.92060 1.60947 1.51374 1.12273 1.05829 1.18723 0.90848 0.87521 0.93195 0.93058 1.21448 1.07052 1.14996 1.13754 0.90470 1.25054 0.94343 0.96839 0.95940 1.69888 1.12735 1.29282 1.40308 0.87049 0.79419 0.80919 0.83244 1.19531 1.21229 1.18808 1.20282 0.93880 0.92341 0.95217 1.20816 0.96542 0.98861 0.96059 1.21014 0.95523 0.98125 0.99719 1.20844 0.99955 0.95628 1.00489 1.20936 0.97503 0.98427 0.97243 1.20995 0.94772 0.98721 1.00621 1.24546 1.00634 0.98526 0.90324 0.92500 0.92168 0.92748 0.91318 0.94504 0.90100 0.91265 0.89063 0.84477 0.92345 0.86819 0.87300 0.87435 0.87300 0.87124 0.91313 0.89595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.98 37.16 0.37 -1.47 16 2 C 0.02 0.27 5.54 -3.82 -0.02 0.25 16 3 N -0.49 -7.83 6.26 -238.43 -1.49 -9.32 16 4 C 0.01 0.09 7.77 -2.76 -0.02 0.07 16 5 C 0.08 1.49 4.26 -69.40 -0.30 1.20 16 6 N -0.68 -13.06 5.93 -103.40 -0.61 -13.67 16 7 C 0.20 4.52 2.15 -70.02 -0.15 4.37 16 8 H 0.05 1.18 3.80 -51.93 -0.20 0.98 16 9 C -0.53 -13.72 8.72 -34.44 -0.30 -14.02 16 10 H 0.08 2.19 8.06 -52.48 -0.42 1.77 16 11 C 0.08 2.24 5.47 -17.82 -0.10 2.14 16 12 N -0.89 -25.53 13.96 55.43 0.77 -24.76 16 13 Si 0.87 20.44 26.90 -169.99 -4.57 15.87 16 14 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 15 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 16 H -0.26 -5.95 6.26 56.52 0.35 -5.59 16 17 C -0.02 -0.34 4.93 -104.62 -0.52 -0.85 16 18 C -0.10 -2.00 9.28 -39.59 -0.37 -2.37 16 19 C -0.13 -2.13 10.05 -39.58 -0.40 -2.53 16 20 C -0.15 -2.46 10.05 -39.58 -0.40 -2.86 16 21 C -0.12 -2.12 10.05 -39.59 -0.40 -2.52 16 22 C -0.13 -2.63 9.67 -39.59 -0.38 -3.01 16 23 C -0.01 -0.18 6.73 -2.76 -0.02 -0.20 16 24 H 0.06 0.77 7.54 -51.93 -0.39 0.38 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.04 0.49 7.69 -51.93 -0.40 0.09 16 29 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.07 1.02 7.80 -51.93 -0.40 0.62 16 31 H 0.09 1.85 7.35 -51.93 -0.38 1.47 16 32 H 0.34 6.45 7.39 -39.29 -0.29 6.16 16 33 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 34 H 0.11 2.09 7.45 -52.48 -0.39 1.70 16 35 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 36 H 0.11 1.44 8.06 -52.48 -0.42 1.01 16 37 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 38 H 0.11 2.17 7.57 -52.49 -0.40 1.78 16 39 H 0.07 1.20 7.46 -51.93 -0.39 0.81 16 40 H 0.09 1.71 8.14 -51.93 -0.42 1.29 16 LS Contribution 323.46 15.07 4.87 4.87 Total: -1.00 -27.48 323.46 -10.25 -37.73 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: -6.23 Total: 11.09 kcal Atomic # 6 Polarization: -18.82 SS G_CDS: -2.99 Total: -21.82 kcal Atomic # 7 Polarization: -46.42 SS G_CDS: -1.33 Total: -47.75 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -4.57 Total: 15.87 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -27.48 -10.25 -37.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393638087.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.268 kcal (2) G-P(sol) polarization free energy of solvation -27.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds