Wall clock time and date at job start Mon Mar 30 2020 04:49:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46906 * 109.47683 * 2 1 4 4 C 1.47961 * 111.00082 * 169.99986 * 3 2 1 5 5 C 1.53944 * 86.17626 * 222.41888 * 4 3 2 6 6 N 1.46897 * 113.72990 * 138.08430 * 5 4 3 7 7 C 1.46896 * 110.99699 * 155.00039 * 6 5 4 8 8 H 1.09004 * 109.47452 * 326.03936 * 7 6 5 9 9 C 1.50695 * 109.47652 * 86.04126 * 7 6 5 10 10 H 1.08005 * 120.00354 * 60.71120 * 9 7 6 11 11 C 1.37878 * 120.00184 * 240.71871 * 9 7 6 12 12 N 1.31520 * 120.00269 * 174.87219 * 11 9 7 13 13 Si 1.86801 * 120.00020 * 354.86536 * 11 9 7 14 14 H 1.48508 * 109.47084 * 84.82272 * 13 11 9 15 15 H 1.48493 * 109.47583 * 204.82513 * 13 11 9 16 16 H 1.48499 * 109.47301 * 324.82835 * 13 11 9 17 17 C 1.50707 * 109.47123 * 206.04213 * 7 6 5 18 18 C 1.38230 * 119.99624 * 315.14337 * 17 7 6 19 19 C 1.38235 * 120.00033 * 179.78880 * 18 17 7 20 20 C 1.38236 * 119.99523 * 0.43998 * 19 18 17 21 21 C 1.38235 * 120.00256 * 359.81262 * 20 19 18 22 22 C 1.38229 * 119.99909 * 359.97438 * 21 20 19 23 23 C 1.47961 * 110.99563 * 70.63483 * 3 2 1 24 24 H 1.09004 * 109.46719 * 300.00310 * 1 2 3 25 25 H 1.09003 * 109.46596 * 59.99928 * 1 2 3 26 26 H 1.09000 * 109.47311 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47402 * 240.00000 * 2 1 3 28 28 H 1.09001 * 109.47236 * 120.00457 * 2 1 3 29 29 H 1.09001 * 113.75603 * 108.10521 * 4 3 2 30 30 H 1.08997 * 113.85604 * 336.74612 * 4 3 2 31 31 H 1.09006 * 113.72748 * 269.25805 * 5 4 3 32 32 H 1.00906 * 110.99842 * 278.94303 * 6 5 4 33 33 H 0.96996 * 120.00037 * 180.02562 * 12 11 9 34 34 H 1.08003 * 120.00045 * 0.02562 * 18 17 7 35 35 H 1.08001 * 120.00358 * 180.27665 * 19 18 17 36 36 H 1.08009 * 119.99530 * 179.83911 * 20 19 18 37 37 H 1.08002 * 119.99891 * 179.97438 * 21 20 19 38 38 H 1.07997 * 119.99980 * 180.02562 * 22 21 20 39 39 H 1.08998 * 113.76155 * 23.27553 * 23 3 2 40 40 H 1.08998 * 113.76103 * 251.89908 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3850 0.0000 4 6 3.4791 1.4313 0.2399 5 6 3.1839 2.6196 1.1730 6 7 3.9513 2.5927 2.4253 7 6 4.1041 3.9450 2.9782 8 1 4.1858 4.6638 2.1629 9 6 2.9034 4.2803 3.8249 10 1 2.6688 3.6796 4.6913 11 6 2.1042 5.3538 3.4936 12 7 1.0013 5.5865 4.1712 13 14 2.5880 6.4779 2.0822 14 1 2.1053 5.9007 0.8019 15 1 1.9769 7.8162 2.2834 16 1 4.0664 6.6103 2.0392 17 6 5.3487 4.0034 3.8260 18 6 5.6229 2.9873 4.7220 19 6 6.7667 3.0386 5.4966 20 6 7.6317 4.1108 5.3814 21 6 7.3549 5.1295 4.4891 22 6 6.2133 5.0760 3.7115 23 6 1.7647 2.0375 1.3032 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 4.0608 1.6996 -0.6421 30 1 3.8691 0.5541 0.7559 31 1 3.2185 3.5882 0.6742 32 1 3.5243 1.9733 3.0978 33 1 0.4389 6.3415 3.9378 34 1 4.9454 2.1512 4.8143 35 1 6.9833 2.2425 6.1935 36 1 8.5241 4.1522 5.9885 37 1 8.0305 5.9674 4.3995 38 1 5.9972 5.8717 3.0140 39 1 1.6517 1.3369 2.1305 40 1 0.9768 2.7900 1.2709 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393638087.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:59 Heat of formation + Delta-G solvation = 40.037492 kcal Electronic energy + Delta-G solvation = -19622.776859 eV Core-core repulsion = 16823.295527 eV Total energy + Delta-G solvation = -2799.481332 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.02593 -39.90818 -36.73340 -34.36439 -33.26228 -31.63172 -31.17066 -28.61858 -27.17108 -26.45823 -24.37985 -23.34087 -22.28302 -21.43955 -20.83556 -19.11740 -17.64857 -17.06489 -16.90609 -16.60022 -15.88013 -15.77554 -15.38410 -14.91244 -14.77987 -14.49787 -14.12736 -13.83285 -13.72930 -13.59543 -13.50588 -13.05871 -12.98860 -12.79573 -12.56283 -12.23802 -12.06224 -11.89181 -11.79783 -11.61236 -11.37825 -11.28240 -10.75880 -9.85173 -9.62114 -9.39498 -9.02945 -8.37110 -6.40398 0.69894 0.76007 1.26140 1.28335 1.35036 2.24389 2.90697 3.02621 3.19292 3.47126 3.77748 3.99902 4.15737 4.17451 4.21958 4.30115 4.34110 4.42001 4.52838 4.57581 4.59898 4.64298 4.74035 4.90196 4.91337 4.91880 4.93655 5.01673 5.10140 5.22298 5.31531 5.39994 5.43884 5.45821 5.76903 5.80886 5.99172 6.05233 6.15057 6.33225 6.42072 6.64344 6.72013 7.26567 8.78682 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.016525 B = 0.007229 C = 0.005739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.972245 B = 3872.569794 C = 4877.737725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.018 3.982 3 N -0.493 5.493 4 C 0.023 3.977 5 C 0.067 3.933 6 N -0.661 5.661 7 C 0.213 3.787 8 H 0.042 0.958 9 C -0.522 4.522 10 H 0.039 0.961 11 C 0.033 3.967 12 N -0.935 5.935 13 Si 0.918 3.082 14 H -0.265 1.265 15 H -0.288 1.288 16 H -0.247 1.247 17 C -0.048 4.048 18 C -0.120 4.120 19 C -0.125 4.125 20 C -0.143 4.143 21 C -0.122 4.122 22 C -0.154 4.154 23 C -0.006 4.006 24 H 0.038 0.962 25 H 0.056 0.944 26 H 0.078 0.922 27 H 0.088 0.912 28 H 0.042 0.958 29 H 0.095 0.905 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.336 0.664 33 H 0.265 0.735 34 H 0.111 0.889 35 H 0.140 0.860 36 H 0.146 0.854 37 H 0.139 0.861 38 H 0.104 0.896 39 H 0.070 0.930 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.186 -8.005 -5.019 12.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 N -0.217 5.217 4 C -0.106 4.106 5 C -0.044 4.044 6 N -0.290 5.290 7 C 0.104 3.896 8 H 0.060 0.940 9 C -0.561 4.561 10 H 0.058 0.942 11 C -0.167 4.167 12 N -0.574 5.574 13 Si 0.743 3.257 14 H -0.190 1.190 15 H -0.215 1.215 16 H -0.171 1.171 17 C -0.049 4.049 18 C -0.138 4.138 19 C -0.142 4.142 20 C -0.161 4.161 21 C -0.140 4.140 22 C -0.173 4.173 23 C -0.136 4.136 24 H 0.057 0.943 25 H 0.075 0.925 26 H 0.097 0.903 27 H 0.107 0.893 28 H 0.060 0.940 29 H 0.113 0.887 30 H 0.101 0.899 31 H 0.090 0.910 32 H 0.155 0.845 33 H 0.075 0.925 34 H 0.129 0.871 35 H 0.158 0.842 36 H 0.164 0.836 37 H 0.157 0.843 38 H 0.122 0.878 39 H 0.088 0.912 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 8.368 -7.633 -5.931 12.785 hybrid contribution -1.298 0.707 0.732 1.650 sum 7.070 -6.926 -5.198 11.179 Atomic orbital electron populations 1.21708 0.94573 1.02388 1.01546 1.22635 0.96837 0.89964 1.01658 1.68477 1.07571 1.15903 1.29739 1.24072 0.90042 0.97777 0.98699 1.23282 0.90930 0.98087 0.92141 1.60973 1.51441 1.10655 1.05923 1.18542 0.90216 0.88403 0.92410 0.94020 1.21589 1.08349 1.13740 1.12399 0.94229 1.25727 0.94287 0.98427 0.98293 1.70020 1.14291 1.30375 1.42699 0.86206 0.79972 0.78899 0.80620 1.19026 1.21464 1.17125 1.20248 0.94265 0.94027 0.96382 1.20926 0.97769 0.98577 0.96557 1.21390 0.94376 0.99225 0.99247 1.21326 1.00672 0.94393 0.99694 1.21300 0.96742 0.99637 0.96344 1.21129 0.96075 0.98363 1.01733 1.24370 0.99316 0.98243 0.91677 0.94287 0.92480 0.90270 0.89325 0.93990 0.88679 0.89889 0.91002 0.84537 0.92533 0.87127 0.84227 0.83580 0.84276 0.87751 0.91209 0.92483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.44 9.98 71.98 0.72 -2.72 16 2 C 0.02 0.44 5.54 86.30 0.48 0.92 16 3 N -0.49 -15.34 6.26 -908.26 -5.69 -21.03 16 4 C 0.02 0.69 7.77 86.41 0.67 1.36 16 5 C 0.07 2.50 4.26 46.48 0.20 2.70 16 6 N -0.66 -25.83 5.93 -481.05 -2.85 -28.68 16 7 C 0.21 9.57 2.15 43.42 0.09 9.66 16 8 H 0.04 1.94 3.80 -2.38 -0.01 1.93 16 9 C -0.52 -27.94 8.72 25.60 0.22 -27.72 16 10 H 0.04 2.37 8.06 -2.91 -0.02 2.35 16 11 C 0.03 1.82 5.47 84.65 0.46 2.28 16 12 N -0.93 -56.34 13.96 21.45 0.30 -56.04 16 13 Si 0.92 43.27 26.90 68.60 1.85 45.11 16 14 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 15 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 16 H -0.25 -10.91 6.26 99.48 0.62 -10.28 16 17 C -0.05 -2.01 4.93 -19.87 -0.10 -2.11 16 18 C -0.12 -4.50 9.28 22.27 0.21 -4.29 16 19 C -0.12 -3.85 10.05 22.27 0.22 -3.63 16 20 C -0.14 -4.08 10.05 22.27 0.22 -3.86 16 21 C -0.12 -3.85 10.05 22.27 0.22 -3.62 16 22 C -0.15 -5.97 9.67 22.27 0.22 -5.76 16 23 C -0.01 -0.20 6.73 86.41 0.58 0.38 16 24 H 0.04 1.05 7.54 -2.38 -0.02 1.03 16 25 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.09 1.90 8.14 -2.39 -0.02 1.89 16 28 H 0.04 1.02 7.69 -2.39 -0.02 1.00 16 29 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 30 H 0.08 2.24 7.80 -2.39 -0.02 2.22 16 31 H 0.07 2.95 7.35 -2.38 -0.02 2.94 16 32 H 0.34 13.17 7.39 -89.69 -0.66 12.50 16 33 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 34 H 0.11 4.09 7.45 -2.91 -0.02 4.07 16 35 H 0.14 3.41 8.06 -2.91 -0.02 3.38 16 36 H 0.15 3.07 8.06 -2.91 -0.02 3.05 16 37 H 0.14 3.47 8.06 -2.91 -0.02 3.44 16 38 H 0.10 4.05 7.57 -2.91 -0.02 4.02 16 39 H 0.07 2.49 7.46 -2.39 -0.02 2.48 16 40 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 Total: -1.00 -61.52 323.46 -1.71 -63.23 By element: Atomic # 1 Polarization: 33.57 SS G_CDS: 0.27 Total: 33.84 kcal Atomic # 6 Polarization: -40.84 SS G_CDS: 4.42 Total: -36.42 kcal Atomic # 7 Polarization: -97.52 SS G_CDS: -8.24 Total: -105.76 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 1.85 Total: 45.11 kcal Total: -61.52 -1.71 -63.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393638087.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.264 kcal (2) G-P(sol) polarization free energy of solvation -61.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds