Wall clock time and date at job start Mon Mar 30 2020 04:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46906 * 109.46813 * 2 1 4 4 C 1.47956 * 110.99919 * 169.99758 * 3 2 1 5 5 C 1.53943 * 86.18353 * 222.42060 * 4 3 2 6 6 N 1.46898 * 113.73182 * 138.07828 * 5 4 3 7 7 C 1.46899 * 110.99539 * 156.90396 * 6 5 4 8 8 C 1.50704 * 109.47310 * 180.02562 * 7 6 5 9 9 C 1.38637 * 119.74934 * 269.73046 * 8 7 6 10 10 C 1.37618 * 120.24535 * 179.71502 * 9 8 7 11 11 C 1.40711 * 119.74757 * 0.57229 * 10 9 8 12 12 C 1.41394 * 120.24494 * 179.67746 * 11 10 9 13 13 H 1.08004 * 120.00147 * 204.40075 * 12 11 10 14 14 C 1.39939 * 119.99918 * 24.40383 * 12 11 10 15 15 N 1.30820 * 120.00244 * 17.85315 * 14 12 11 16 16 Si 1.86804 * 120.00028 * 197.85693 * 14 12 11 17 17 H 1.48496 * 109.47066 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47417 * 119.99935 * 16 14 12 19 19 H 1.48503 * 109.47002 * 239.99767 * 16 14 12 20 20 C 1.40719 * 119.51046 * 359.70412 * 11 10 9 21 21 C 1.37618 * 119.74314 * 359.97438 * 20 11 10 22 22 C 1.48195 * 111.06478 * 70.56729 * 3 2 1 23 23 H 1.08997 * 109.47407 * 60.00290 * 1 2 3 24 24 H 1.09004 * 109.46214 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47085 * 299.99101 * 1 2 3 26 26 H 1.09001 * 109.47542 * 240.00822 * 2 1 3 27 27 H 1.08997 * 109.47407 * 119.99710 * 2 1 3 28 28 H 1.08998 * 113.75813 * 108.10685 * 4 3 2 29 29 H 1.09002 * 113.76526 * 336.74081 * 4 3 2 30 30 H 1.08994 * 113.73335 * 269.26005 * 5 4 3 31 31 H 1.00898 * 111.00021 * 32.95434 * 6 5 4 32 32 H 1.08999 * 109.47416 * 59.99975 * 7 6 5 33 33 H 1.09002 * 109.47149 * 299.99479 * 7 6 5 34 34 H 1.08000 * 119.87053 * 359.96934 * 9 8 7 35 35 H 1.07998 * 120.12413 * 180.27440 * 10 9 8 36 36 H 0.96997 * 120.00535 * 180.02562 * 15 14 12 37 37 H 1.08001 * 120.12523 * 179.97438 * 20 11 10 38 38 H 1.08004 * 119.87152 * 179.97438 * 21 20 11 39 39 H 1.08993 * 113.76158 * 23.23983 * 22 3 2 40 40 H 1.09000 * 113.82441 * 251.80674 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 3.4789 1.4316 0.2399 5 6 3.1836 2.6198 1.1731 6 7 3.9510 2.5928 2.4255 7 6 4.0652 3.9392 3.0019 8 6 4.8573 3.8720 4.2822 9 6 4.2020 3.6679 5.4867 10 6 4.9159 3.5990 6.6612 11 6 6.3148 3.7486 6.6378 12 6 7.0579 3.6865 7.8391 13 1 8.0209 4.1711 7.9041 14 6 6.5456 2.9970 8.9439 15 7 5.5778 2.1315 8.7835 16 14 7.2437 3.3125 10.6476 17 1 8.3229 4.3287 10.5600 18 1 6.1660 3.8100 11.5399 19 1 7.7975 2.0490 11.1974 20 6 6.9687 3.9611 5.4100 21 6 6.2353 4.0198 4.2471 22 6 1.7634 2.0406 1.3041 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3632 -1.0278 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 1.8934 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 4.0605 1.6999 -0.6420 29 1 3.8674 0.5537 0.7561 30 1 3.2182 3.5884 0.6745 31 1 4.8615 2.1821 2.2829 32 1 3.0696 4.3308 3.2104 33 1 4.5731 4.5952 2.2949 34 1 3.1277 3.5586 5.5028 35 1 4.4038 3.4356 7.5980 36 1 5.2225 1.6538 9.5493 37 1 8.0420 4.0776 5.3806 38 1 6.7350 4.1832 3.3036 39 1 1.6490 1.3412 2.1322 40 1 0.9769 2.7946 1.2709 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399114947.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:48 Heat of formation + Delta-G solvation = 45.121500 kcal Electronic energy + Delta-G solvation = -18577.187592 eV Core-core repulsion = 15777.926720 eV Total energy + Delta-G solvation = -2799.260872 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.95684 -37.67873 -35.07776 -33.55155 -32.03153 -29.86550 -29.21651 -26.93679 -26.26370 -25.17200 -23.02997 -21.46648 -20.93885 -20.01009 -19.51849 -17.29003 -16.09587 -16.02826 -15.42839 -15.30695 -14.67658 -14.05378 -13.89912 -13.67269 -13.28186 -12.97782 -12.73557 -12.53698 -12.31580 -11.94091 -11.75362 -11.69560 -11.47809 -11.25955 -11.09667 -10.92257 -10.80718 -10.59221 -10.40733 -10.31520 -9.57789 -9.36743 -9.13035 -8.89878 -8.10981 -7.43311 -7.29794 -6.75534 -4.34488 2.73885 3.06969 3.09027 3.12539 3.17188 3.86673 3.93270 4.42381 4.51733 4.70963 4.87699 5.02905 5.17160 5.23629 5.42297 5.49239 5.56149 5.70602 5.72332 5.76526 5.80196 5.87088 5.91132 5.97489 6.11892 6.26676 6.29719 6.36692 6.45864 6.96869 6.98918 7.07774 7.30595 7.36634 7.42054 7.62260 7.69367 7.89933 8.06833 8.15994 8.31159 8.65808 8.90446 8.98930 10.18725 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.034761 B = 0.003503 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.311984 B = 7991.231467 C = 8450.498434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.017 3.983 3 N -0.484 5.484 4 C -0.002 4.002 5 C 0.054 3.946 6 N -0.673 5.673 7 C 0.125 3.875 8 C -0.215 4.215 9 C -0.079 4.079 10 C -0.168 4.168 11 C 0.112 3.888 12 C -0.463 4.463 13 H 0.077 0.923 14 C 0.076 3.924 15 N -0.791 5.791 16 Si 0.906 3.094 17 H -0.261 1.261 18 H -0.272 1.272 19 H -0.275 1.275 20 C -0.228 4.228 21 C -0.085 4.085 22 C 0.014 3.986 23 H 0.060 0.940 24 H 0.057 0.943 25 H 0.055 0.945 26 H 0.072 0.928 27 H 0.042 0.958 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.342 0.658 32 H 0.062 0.938 33 H 0.019 0.981 34 H 0.087 0.913 35 H 0.117 0.883 36 H 0.280 0.720 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.000 -2.140 -11.384 13.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.111 4.111 3 N -0.207 5.207 4 C -0.132 4.132 5 C -0.057 4.057 6 N -0.305 5.305 7 C -0.003 4.003 8 C -0.216 4.216 9 C -0.098 4.098 10 C -0.187 4.187 11 C 0.109 3.891 12 C -0.492 4.492 13 H 0.095 0.905 14 C -0.142 4.142 15 N -0.416 5.416 16 Si 0.731 3.269 17 H -0.184 1.184 18 H -0.197 1.197 19 H -0.200 1.200 20 C -0.247 4.247 21 C -0.104 4.104 22 C -0.115 4.115 23 H 0.079 0.921 24 H 0.076 0.924 25 H 0.074 0.926 26 H 0.090 0.910 27 H 0.060 0.940 28 H 0.103 0.897 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.162 0.838 32 H 0.080 0.920 33 H 0.038 0.962 34 H 0.105 0.895 35 H 0.135 0.865 36 H 0.091 0.909 37 H 0.108 0.892 38 H 0.101 0.899 39 H 0.097 0.903 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -6.970 -2.232 -11.481 13.615 hybrid contribution 1.208 -0.143 0.927 1.530 sum -5.761 -2.375 -10.554 12.256 Atomic orbital electron populations 1.21715 0.94821 1.01487 1.02421 1.22571 0.96544 0.90980 1.01050 1.68527 1.06493 1.14744 1.30978 1.24197 0.91326 0.98626 0.99014 1.23425 0.94960 0.97379 0.89938 1.60809 1.22348 1.23091 1.24301 1.20611 0.98506 0.87615 0.93552 1.18908 0.93163 1.16425 0.93144 1.20499 0.97292 0.99311 0.92678 1.21312 0.94135 1.06326 0.96927 1.17631 0.92010 0.87559 0.91858 1.19626 1.04543 1.29475 0.95604 0.90487 1.25910 0.94164 0.92926 1.01202 1.69840 1.22050 1.17103 1.32632 0.86298 0.79886 0.79242 0.81510 1.18427 1.19701 1.20023 1.20931 0.97445 1.13729 0.92638 1.20353 0.93240 1.00555 0.96249 1.24106 0.97683 0.98739 0.90985 0.92104 0.92422 0.92596 0.90992 0.93972 0.89734 0.90560 0.90663 0.83850 0.91955 0.96234 0.89515 0.86538 0.90944 0.89182 0.89935 0.90287 0.90006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.98 37.16 0.37 -1.00 16 2 C 0.02 0.18 5.54 -3.82 -0.02 0.16 16 3 N -0.48 -5.78 6.26 -238.18 -1.49 -7.27 16 4 C 0.00 -0.03 7.57 -2.76 -0.02 -0.05 16 5 C 0.05 0.71 4.30 -69.39 -0.30 0.41 16 6 N -0.67 -10.59 6.55 -109.22 -0.72 -11.31 16 7 C 0.12 2.17 5.66 -4.97 -0.03 2.14 16 8 C -0.21 -4.59 5.41 -104.33 -0.56 -5.16 16 9 C -0.08 -1.84 9.67 -39.66 -0.38 -2.23 16 10 C -0.17 -4.37 8.70 -38.87 -0.34 -4.71 16 11 C 0.11 2.99 5.57 -106.83 -0.60 2.40 16 12 C -0.46 -12.32 9.05 -37.74 -0.34 -12.67 16 13 H 0.08 1.98 7.91 -52.48 -0.41 1.56 16 14 C 0.08 1.91 5.14 -17.35 -0.09 1.82 16 15 N -0.79 -20.53 10.95 55.55 0.61 -19.93 16 16 Si 0.91 18.66 29.60 -169.99 -5.03 13.63 16 17 H -0.26 -5.32 7.11 56.52 0.40 -4.91 16 18 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 19 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 20 C -0.23 -5.58 9.80 -38.87 -0.38 -5.96 16 21 C -0.09 -1.87 9.67 -39.66 -0.38 -2.26 16 22 C 0.01 0.18 6.93 -2.62 -0.02 0.16 16 23 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 25 H 0.05 0.55 7.54 -51.93 -0.39 0.15 16 26 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.04 0.46 7.70 -51.93 -0.40 0.06 16 28 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.08 0.90 7.79 -51.93 -0.40 0.49 16 30 H 0.08 0.98 7.88 -51.93 -0.41 0.57 16 31 H 0.34 5.37 8.56 -39.29 -0.34 5.04 16 32 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 33 H 0.02 0.32 8.07 -51.93 -0.42 -0.10 16 34 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 35 H 0.12 3.15 6.16 -52.49 -0.32 2.82 16 36 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 37 H 0.09 2.09 8.06 -52.49 -0.42 1.67 16 38 H 0.08 1.60 8.06 -52.48 -0.42 1.17 16 39 H 0.08 1.08 7.79 -51.93 -0.40 0.67 16 40 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 328.33 15.07 4.95 4.95 Total: -1.00 -26.88 328.33 -11.21 -38.09 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: -6.44 Total: 8.78 kcal Atomic # 6 Polarization: -23.85 SS G_CDS: -3.09 Total: -26.94 kcal Atomic # 7 Polarization: -36.91 SS G_CDS: -1.60 Total: -38.50 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -5.03 Total: 13.63 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -26.88 -11.21 -38.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399114947.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.214 kcal (2) G-P(sol) polarization free energy of solvation -26.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds