Wall clock time and date at job start Mon Mar 30 2020 04:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46906 * 109.46813 * 2 1 4 4 C 1.47956 * 110.99919 * 169.99758 * 3 2 1 5 5 C 1.53943 * 86.18353 * 222.42060 * 4 3 2 6 6 N 1.46898 * 113.73182 * 138.07828 * 5 4 3 7 7 C 1.46899 * 110.99539 * 156.90396 * 6 5 4 8 8 C 1.50704 * 109.47310 * 180.02562 * 7 6 5 9 9 C 1.38637 * 119.74934 * 269.73046 * 8 7 6 10 10 C 1.37618 * 120.24535 * 179.71502 * 9 8 7 11 11 C 1.40711 * 119.74757 * 0.57229 * 10 9 8 12 12 C 1.41394 * 120.24494 * 179.67746 * 11 10 9 13 13 H 1.08004 * 120.00147 * 204.40075 * 12 11 10 14 14 C 1.39939 * 119.99918 * 24.40383 * 12 11 10 15 15 N 1.30820 * 120.00244 * 17.85315 * 14 12 11 16 16 Si 1.86804 * 120.00028 * 197.85693 * 14 12 11 17 17 H 1.48496 * 109.47066 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47417 * 119.99935 * 16 14 12 19 19 H 1.48503 * 109.47002 * 239.99767 * 16 14 12 20 20 C 1.40719 * 119.51046 * 359.70412 * 11 10 9 21 21 C 1.37618 * 119.74314 * 359.97438 * 20 11 10 22 22 C 1.48195 * 111.06478 * 70.56729 * 3 2 1 23 23 H 1.08997 * 109.47407 * 60.00290 * 1 2 3 24 24 H 1.09004 * 109.46214 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47085 * 299.99101 * 1 2 3 26 26 H 1.09001 * 109.47542 * 240.00822 * 2 1 3 27 27 H 1.08997 * 109.47407 * 119.99710 * 2 1 3 28 28 H 1.08998 * 113.75813 * 108.10685 * 4 3 2 29 29 H 1.09002 * 113.76526 * 336.74081 * 4 3 2 30 30 H 1.08994 * 113.73335 * 269.26005 * 5 4 3 31 31 H 1.00898 * 111.00021 * 32.95434 * 6 5 4 32 32 H 1.08999 * 109.47416 * 59.99975 * 7 6 5 33 33 H 1.09002 * 109.47149 * 299.99479 * 7 6 5 34 34 H 1.08000 * 119.87053 * 359.96934 * 9 8 7 35 35 H 1.07998 * 120.12413 * 180.27440 * 10 9 8 36 36 H 0.96997 * 120.00535 * 180.02562 * 15 14 12 37 37 H 1.08001 * 120.12523 * 179.97438 * 20 11 10 38 38 H 1.08004 * 119.87152 * 179.97438 * 21 20 11 39 39 H 1.08993 * 113.76158 * 23.23983 * 22 3 2 40 40 H 1.09000 * 113.82441 * 251.80674 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 3.4789 1.4316 0.2399 5 6 3.1836 2.6198 1.1731 6 7 3.9510 2.5928 2.4255 7 6 4.0652 3.9392 3.0019 8 6 4.8573 3.8720 4.2822 9 6 4.2020 3.6679 5.4867 10 6 4.9159 3.5990 6.6612 11 6 6.3148 3.7486 6.6378 12 6 7.0579 3.6865 7.8391 13 1 8.0209 4.1711 7.9041 14 6 6.5456 2.9970 8.9439 15 7 5.5778 2.1315 8.7835 16 14 7.2437 3.3125 10.6476 17 1 8.3229 4.3287 10.5600 18 1 6.1660 3.8100 11.5399 19 1 7.7975 2.0490 11.1974 20 6 6.9687 3.9611 5.4100 21 6 6.2353 4.0198 4.2471 22 6 1.7634 2.0406 1.3041 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3632 -1.0278 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 1.8934 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 4.0605 1.6999 -0.6420 29 1 3.8674 0.5537 0.7561 30 1 3.2182 3.5884 0.6745 31 1 4.8615 2.1821 2.2829 32 1 3.0696 4.3308 3.2104 33 1 4.5731 4.5952 2.2949 34 1 3.1277 3.5586 5.5028 35 1 4.4038 3.4356 7.5980 36 1 5.2225 1.6538 9.5493 37 1 8.0420 4.0776 5.3806 38 1 6.7350 4.1832 3.3036 39 1 1.6490 1.3412 2.1322 40 1 0.9769 2.7946 1.2709 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399114947.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:47 Heat of formation + Delta-G solvation = 28.145753 kcal Electronic energy + Delta-G solvation = -18577.923716 eV Core-core repulsion = 15777.926720 eV Total energy + Delta-G solvation = -2799.996996 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.94117 -39.47399 -36.51841 -35.19532 -33.14517 -31.52372 -31.06168 -28.37999 -27.29544 -26.43273 -24.56580 -22.84567 -22.35879 -21.67485 -20.63387 -19.20597 -17.24620 -17.15202 -16.95073 -16.56054 -15.93241 -15.59943 -15.48468 -15.14352 -14.49050 -14.32600 -14.09994 -13.79873 -13.64301 -13.44269 -13.32773 -13.00395 -12.72912 -12.66813 -12.53048 -12.30284 -12.09555 -12.02787 -11.75210 -11.52882 -11.29458 -11.19168 -10.99092 -9.85307 -9.38633 -9.32564 -9.12687 -8.62409 -6.31966 0.95986 1.17437 1.37954 1.49842 1.53352 2.21136 2.69130 2.94161 3.39987 3.52582 3.81288 4.04187 4.10690 4.22483 4.29833 4.36198 4.38935 4.55359 4.58704 4.60701 4.64914 4.71614 4.83193 4.86247 4.93483 4.98235 5.09032 5.11499 5.17604 5.21505 5.41013 5.43571 5.48695 5.73409 5.96686 6.06973 6.12207 6.19317 6.30584 6.41325 6.50526 6.73449 6.96196 7.06539 8.34414 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.034761 B = 0.003503 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.311984 B = 7991.231467 C = 8450.498434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.015 3.985 3 N -0.488 5.488 4 C 0.004 3.996 5 C 0.055 3.945 6 N -0.683 5.683 7 C 0.133 3.867 8 C -0.200 4.200 9 C -0.086 4.086 10 C -0.192 4.192 11 C 0.078 3.922 12 C -0.502 4.502 13 H 0.073 0.927 14 C 0.034 3.966 15 N -0.826 5.826 16 Si 0.981 3.019 17 H -0.259 1.259 18 H -0.264 1.264 19 H -0.266 1.266 20 C -0.244 4.244 21 C -0.084 4.084 22 C 0.015 3.985 23 H 0.061 0.939 24 H 0.071 0.929 25 H 0.048 0.952 26 H 0.082 0.918 27 H 0.035 0.965 28 H 0.099 0.901 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.343 0.657 32 H 0.067 0.933 33 H 0.038 0.962 34 H 0.100 0.900 35 H 0.097 0.903 36 H 0.287 0.713 37 H 0.095 0.905 38 H 0.116 0.884 39 H 0.066 0.934 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.258 -2.115 -12.841 14.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.113 4.113 3 N -0.211 5.211 4 C -0.125 4.125 5 C -0.056 4.056 6 N -0.315 5.315 7 C 0.005 3.995 8 C -0.202 4.202 9 C -0.105 4.105 10 C -0.211 4.211 11 C 0.076 3.924 12 C -0.532 4.532 13 H 0.092 0.908 14 C -0.180 4.180 15 N -0.452 5.452 16 Si 0.802 3.198 17 H -0.182 1.182 18 H -0.189 1.189 19 H -0.190 1.190 20 C -0.263 4.263 21 C -0.102 4.102 22 C -0.114 4.114 23 H 0.080 0.920 24 H 0.090 0.910 25 H 0.067 0.933 26 H 0.100 0.900 27 H 0.053 0.947 28 H 0.117 0.883 29 H 0.092 0.908 30 H 0.100 0.900 31 H 0.162 0.838 32 H 0.085 0.915 33 H 0.056 0.944 34 H 0.118 0.882 35 H 0.115 0.885 36 H 0.098 0.902 37 H 0.113 0.887 38 H 0.134 0.866 39 H 0.084 0.916 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -7.236 -2.210 -12.962 15.009 hybrid contribution 1.218 -0.166 1.196 1.715 sum -6.017 -2.376 -11.767 13.428 Atomic orbital electron populations 1.21694 0.93969 1.02366 1.02068 1.22631 0.97309 0.90190 1.01201 1.68547 1.06684 1.15612 1.30256 1.24187 0.91413 0.97789 0.99124 1.23474 0.94711 0.98335 0.89059 1.60700 1.22667 1.21981 1.26125 1.20507 0.98201 0.88955 0.91880 1.19349 0.93408 1.13162 0.94263 1.20732 0.98038 0.99000 0.92743 1.21264 0.94306 1.08330 0.97247 1.17975 0.92586 0.88829 0.93012 1.19855 1.05082 1.31204 0.97048 0.90847 1.26755 0.94375 0.92041 1.04867 1.69893 1.23327 1.17872 1.34078 0.85177 0.79177 0.79278 0.76166 1.18205 1.18898 1.19048 1.21159 0.98060 1.14129 0.92990 1.20692 0.93572 0.99211 0.96750 1.24051 0.97651 0.98669 0.91046 0.92001 0.91004 0.93331 0.89962 0.94658 0.88283 0.90784 0.89962 0.83795 0.91462 0.94386 0.88197 0.88515 0.90248 0.88687 0.86566 0.91580 0.89529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 9.98 71.98 0.72 -1.70 16 2 C 0.02 0.29 5.54 86.30 0.48 0.77 16 3 N -0.49 -10.57 6.26 -907.47 -5.68 -16.25 16 4 C 0.00 0.08 7.57 86.41 0.65 0.74 16 5 C 0.05 1.29 4.30 46.48 0.20 1.49 16 6 N -0.68 -19.89 6.55 -499.45 -3.27 -23.16 16 7 C 0.13 4.24 5.66 85.56 0.48 4.72 16 8 C -0.20 -8.27 5.41 -19.67 -0.11 -8.38 16 9 C -0.09 -4.04 9.67 22.22 0.21 -3.83 16 10 C -0.19 -10.33 8.70 22.73 0.20 -10.13 16 11 C 0.08 4.31 5.57 -21.29 -0.12 4.19 16 12 C -0.50 -27.71 9.05 23.46 0.21 -27.50 16 13 H 0.07 3.92 7.91 -2.91 -0.02 3.90 16 14 C 0.03 1.76 5.14 85.26 0.44 2.20 16 15 N -0.83 -44.20 10.95 21.82 0.24 -43.96 16 16 Si 0.98 38.89 29.60 68.60 2.03 40.92 16 17 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 18 H -0.26 -10.05 7.11 99.48 0.71 -9.35 16 19 H -0.27 -10.05 7.11 99.48 0.71 -9.34 16 20 C -0.24 -12.03 9.80 22.73 0.22 -11.81 16 21 C -0.08 -3.56 9.67 22.22 0.21 -3.34 16 22 C 0.02 0.36 6.93 86.37 0.60 0.96 16 23 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 25 H 0.05 0.88 7.54 -2.39 -0.02 0.86 16 26 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.04 0.73 7.70 -2.39 -0.02 0.71 16 28 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.07 1.59 7.79 -2.39 -0.02 1.57 16 30 H 0.08 1.88 7.88 -2.39 -0.02 1.86 16 31 H 0.34 9.95 8.56 -89.70 -0.77 9.18 16 32 H 0.07 2.11 8.08 -2.39 -0.02 2.09 16 33 H 0.04 1.10 8.07 -2.39 -0.02 1.08 16 34 H 0.10 4.31 8.06 -2.91 -0.02 4.29 16 35 H 0.10 5.49 6.16 -2.91 -0.02 5.47 16 36 H 0.29 13.84 8.30 -92.71 -0.77 13.08 16 37 H 0.09 4.45 8.06 -2.91 -0.02 4.43 16 38 H 0.12 4.13 8.06 -2.91 -0.02 4.10 16 39 H 0.07 1.73 7.79 -2.39 -0.02 1.71 16 40 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -58.65 328.33 -2.03 -60.68 By element: Atomic # 1 Polarization: 33.13 SS G_CDS: 0.24 Total: 33.38 kcal Atomic # 6 Polarization: -56.01 SS G_CDS: 4.41 Total: -51.60 kcal Atomic # 7 Polarization: -74.66 SS G_CDS: -8.71 Total: -83.37 kcal Atomic # 14 Polarization: 38.89 SS G_CDS: 2.03 Total: 40.92 kcal Total: -58.65 -2.03 -60.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399114947.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.824 kcal (2) G-P(sol) polarization free energy of solvation -58.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds