Wall clock time and date at job start Mon Mar 30 2020 04:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.49357 * 2 1 4 4 C 1.53046 * 109.49373 * 239.94942 * 2 1 3 5 5 N 1.46950 * 109.36678 * 181.61231 * 4 2 1 6 6 C 1.46957 * 110.88240 * 59.32065 * 5 4 2 7 7 C 1.53048 * 109.36544 * 300.68029 * 6 5 4 8 8 N 1.46960 * 109.36005 * 58.40007 * 7 6 5 9 9 C 1.46902 * 110.99394 * 176.81219 * 8 7 6 10 10 C 1.50692 * 109.47349 * 293.79560 * 9 8 7 11 11 C 1.38636 * 119.75318 * 269.72747 * 10 9 8 12 12 C 1.37614 * 120.25409 * 179.75748 * 11 10 9 13 13 C 1.40716 * 119.74278 * 0.53816 * 12 11 10 14 14 C 1.41397 * 120.24759 * 179.74004 * 13 12 11 15 15 H 1.08003 * 120.00090 * 204.36483 * 14 13 12 16 16 C 1.39945 * 119.99793 * 24.36614 * 14 13 12 17 17 N 1.30822 * 119.99751 * 17.86164 * 16 14 13 18 18 Si 1.86797 * 119.99996 * 197.86139 * 16 14 13 19 19 H 1.48495 * 109.47418 * 60.00008 * 18 16 14 20 20 H 1.48496 * 109.46967 * 180.02562 * 18 16 14 21 21 H 1.48507 * 109.47125 * 299.99932 * 18 16 14 22 22 C 1.40724 * 119.51083 * 359.71976 * 13 12 11 23 23 C 1.37616 * 119.74257 * 359.97438 * 22 13 12 24 24 H 1.08994 * 109.47141 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47304 * 300.00394 * 1 2 3 26 26 H 1.09008 * 109.46726 * 60.00670 * 1 2 3 27 27 H 1.08998 * 109.49331 * 301.58496 * 4 2 1 28 28 H 1.09005 * 109.48850 * 61.64411 * 4 2 1 29 29 H 1.00906 * 111.00127 * 183.19420 * 5 4 2 30 30 H 1.09005 * 109.48727 * 60.64690 * 6 5 4 31 31 H 1.09000 * 109.48858 * 180.68580 * 6 5 4 32 32 H 1.09000 * 109.48967 * 178.35986 * 7 6 5 33 33 H 1.08998 * 109.49220 * 298.43345 * 7 6 5 34 34 H 1.08997 * 109.47482 * 53.80142 * 9 8 7 35 35 H 1.09009 * 109.46739 * 173.79596 * 9 8 7 36 36 H 1.08006 * 119.87386 * 0.02562 * 11 10 9 37 37 H 1.07995 * 120.13370 * 180.23430 * 12 11 10 38 38 H 0.97003 * 119.99913 * 179.97438 * 17 16 14 39 39 H 1.07994 * 120.12461 * 179.97438 * 22 13 12 40 40 H 1.07999 * 119.87276 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0407 -0.7225 -1.2488 5 7 3.5097 -0.7547 -1.2266 6 6 4.0004 -1.4483 -0.0276 7 6 3.4897 -0.7259 1.2213 8 7 2.0206 -0.6937 1.1991 9 6 1.4892 -0.0739 2.4203 10 6 1.8075 -0.9474 3.6063 11 6 0.9111 -1.9300 3.9974 12 6 1.1935 -2.7368 5.0758 13 6 2.3924 -2.5538 5.7895 14 6 2.6909 -3.3730 6.9027 15 1 3.3633 -3.0180 7.6696 16 6 2.1149 -4.6439 7.0105 17 7 1.5956 -5.2183 5.9561 18 14 2.0876 -5.5199 8.6601 19 1 1.3350 -4.7004 9.6435 20 1 1.4274 -6.8413 8.5078 21 1 3.4793 -5.7149 9.1402 22 6 3.2924 -1.5496 5.3869 23 6 2.9920 -0.7588 4.3015 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.6548 -1.7417 -1.2627 28 1 1.7020 -0.1929 -2.1394 29 1 3.8748 -1.1803 -2.0655 30 1 3.6367 -2.4759 -0.0275 31 1 5.0904 -1.4484 -0.0280 32 1 3.8284 -1.2555 2.1118 33 1 3.8756 0.2934 1.2352 34 1 1.9452 0.9064 2.5583 35 1 0.4085 0.0374 2.3306 36 1 -0.0105 -2.0658 3.4508 37 1 0.4956 -3.5041 5.3764 38 1 1.1967 -6.0993 6.0308 39 1 4.2152 -1.4003 5.9277 40 1 3.6810 0.0127 3.9909 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399222599.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:54 Heat of formation + Delta-G solvation = 21.745015 kcal Electronic energy + Delta-G solvation = -19514.528310 eV Core-core repulsion = 16714.253757 eV Total energy + Delta-G solvation = -2800.274553 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.20360 -37.38550 -34.65596 -33.49426 -32.21703 -30.19413 -29.18738 -27.61643 -26.57750 -24.82254 -22.60111 -21.90987 -20.86560 -19.80945 -19.26629 -17.26130 -16.43996 -15.36524 -15.31734 -14.84136 -14.55057 -14.26528 -13.87665 -13.67865 -13.38997 -13.17069 -12.51514 -12.41545 -11.96431 -11.90479 -11.73564 -11.49645 -11.37431 -11.07268 -11.01217 -10.91474 -10.72110 -10.37883 -10.33635 -10.21024 -9.55032 -9.33291 -9.08617 -8.46463 -7.86167 -7.40233 -7.24566 -6.73204 -4.32031 2.77914 3.07254 3.09886 3.10618 3.20694 3.94539 4.26330 4.27764 4.70813 4.98354 5.21972 5.25375 5.45975 5.53906 5.59326 5.69519 5.74948 5.77913 5.87951 5.98322 6.04035 6.07398 6.17003 6.31088 6.35559 6.37569 6.44486 6.50787 6.98387 6.99448 7.09745 7.30539 7.33594 7.38951 7.54150 7.58686 7.65252 7.92367 8.08479 8.18892 8.33556 8.67815 8.92623 9.01429 10.21061 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.033109 B = 0.004531 C = 0.004461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.478765 B = 6178.034596 C = 6275.370187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.080 3.920 3 H 0.040 0.960 4 C 0.066 3.934 5 N -0.694 5.694 6 C 0.058 3.942 7 C 0.059 3.941 8 N -0.527 5.527 9 C 0.116 3.884 10 C -0.206 4.206 11 C -0.080 4.080 12 C -0.167 4.167 13 C 0.112 3.888 14 C -0.465 4.465 15 H 0.076 0.924 16 C 0.077 3.923 17 N -0.792 5.792 18 Si 0.907 3.093 19 H -0.264 1.264 20 H -0.279 1.279 21 H -0.266 1.266 22 C -0.227 4.227 23 C -0.086 4.086 24 H 0.063 0.937 25 H 0.061 0.939 26 H 0.055 0.945 27 H 0.038 0.962 28 H 0.072 0.928 29 H 0.338 0.662 30 H 0.040 0.960 31 H 0.074 0.926 32 H 0.093 0.907 33 H 0.031 0.969 34 H 0.021 0.979 35 H 0.071 0.929 36 H 0.086 0.914 37 H 0.116 0.884 38 H 0.280 0.720 39 H 0.090 0.910 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.407 5.642 -10.089 11.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.029 4.029 3 H 0.058 0.942 4 C -0.064 4.064 5 N -0.325 5.325 6 C -0.071 4.071 7 C -0.070 4.070 8 N -0.253 5.253 9 C -0.010 4.010 10 C -0.207 4.207 11 C -0.099 4.099 12 C -0.187 4.187 13 C 0.110 3.890 14 C -0.494 4.494 15 H 0.094 0.906 16 C -0.141 4.141 17 N -0.418 5.418 18 Si 0.731 3.269 19 H -0.188 1.188 20 H -0.204 1.204 21 H -0.191 1.191 22 C -0.247 4.247 23 C -0.104 4.104 24 H 0.082 0.918 25 H 0.080 0.920 26 H 0.074 0.926 27 H 0.057 0.943 28 H 0.090 0.910 29 H 0.155 0.845 30 H 0.058 0.942 31 H 0.093 0.907 32 H 0.111 0.889 33 H 0.049 0.951 34 H 0.039 0.961 35 H 0.089 0.911 36 H 0.104 0.896 37 H 0.134 0.866 38 H 0.091 0.909 39 H 0.108 0.892 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.628 5.561 -9.916 11.386 hybrid contribution 0.159 -0.668 0.467 0.830 sum -0.469 4.893 -9.449 10.651 Atomic orbital electron populations 1.21886 0.94465 1.02640 1.01487 1.21619 0.94953 0.95739 0.90597 0.94174 1.22005 0.87654 0.99376 0.97383 1.60537 1.08653 1.58246 1.05071 1.22029 0.99113 0.96052 0.89920 1.22153 0.87828 0.98941 0.98042 1.62285 1.08061 1.53515 1.01426 1.20827 0.98868 0.93755 0.87572 1.18861 0.98470 1.03459 0.99930 1.20473 0.97406 0.95227 0.96753 1.21298 0.98060 1.01119 0.98190 1.17606 0.89972 0.90155 0.91316 1.19560 1.24764 0.98964 1.06144 0.90599 1.25894 0.93067 0.97540 0.97597 1.69830 1.28344 1.14192 1.29400 0.86400 0.79507 0.78379 0.82614 1.18847 1.20368 1.19053 1.20932 0.99959 1.03112 1.00687 1.20356 0.95503 0.98311 0.96262 0.91780 0.91982 0.92633 0.94341 0.90988 0.84499 0.94183 0.90727 0.88920 0.95128 0.96091 0.91110 0.89627 0.86584 0.90881 0.89224 0.89953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 8.89 37.16 0.33 -1.49 16 2 C 0.08 1.13 2.56 -67.66 -0.17 0.96 16 3 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 4 C 0.07 0.83 6.00 -3.77 -0.02 0.81 16 5 N -0.69 -8.85 6.90 -113.64 -0.78 -9.63 16 6 C 0.06 0.83 6.72 -3.77 -0.03 0.81 16 7 C 0.06 0.98 5.24 -3.77 -0.02 0.96 16 8 N -0.53 -9.00 4.52 -227.92 -1.03 -10.03 16 9 C 0.12 2.10 4.88 -4.98 -0.02 2.08 16 10 C -0.21 -4.47 4.92 -104.33 -0.51 -4.98 16 11 C -0.08 -1.88 9.67 -39.66 -0.38 -2.26 16 12 C -0.17 -4.38 8.70 -38.87 -0.34 -4.72 16 13 C 0.11 3.01 5.58 -106.82 -0.60 2.41 16 14 C -0.46 -12.43 9.05 -37.74 -0.34 -12.78 16 15 H 0.08 1.95 7.91 -52.48 -0.42 1.54 16 16 C 0.08 1.94 5.14 -17.34 -0.09 1.85 16 17 N -0.79 -20.71 10.95 55.55 0.61 -20.10 16 18 Si 0.91 18.77 29.60 -169.99 -5.03 13.74 16 19 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 20 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 21 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 22 C -0.23 -5.61 9.80 -38.87 -0.38 -5.99 16 23 C -0.09 -1.91 7.87 -39.66 -0.31 -2.22 16 24 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.06 0.78 6.15 -51.93 -0.32 0.46 16 26 H 0.05 0.56 8.14 -51.92 -0.42 0.14 16 27 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.34 3.50 8.90 -39.29 -0.35 3.15 16 30 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.09 1.75 5.94 -51.93 -0.31 1.45 16 33 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.02 0.37 8.06 -51.93 -0.42 -0.05 16 35 H 0.07 1.21 5.67 -51.92 -0.29 0.92 16 36 H 0.09 1.87 8.06 -52.48 -0.42 1.44 16 37 H 0.12 3.15 6.16 -52.49 -0.32 2.83 16 38 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 39 H 0.09 2.10 8.06 -52.49 -0.42 1.67 16 40 H 0.08 1.65 7.98 -52.49 -0.42 1.23 16 LS Contribution 314.62 15.07 4.74 4.74 Total: -1.00 -27.54 314.62 -10.59 -38.14 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: -6.21 Total: 7.70 kcal Atomic # 6 Polarization: -21.67 SS G_CDS: -2.89 Total: -24.56 kcal Atomic # 7 Polarization: -38.56 SS G_CDS: -1.21 Total: -39.76 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.03 Total: 13.74 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -27.54 -10.59 -38.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399222599.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.882 kcal (2) G-P(sol) polarization free energy of solvation -27.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds