Wall clock time and date at job start Mon Mar 30 2020 04:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.49357 * 2 1 4 4 C 1.53046 * 109.49373 * 239.94942 * 2 1 3 5 5 N 1.46950 * 109.36678 * 181.61231 * 4 2 1 6 6 C 1.46957 * 110.88240 * 59.32065 * 5 4 2 7 7 C 1.53048 * 109.36544 * 300.68029 * 6 5 4 8 8 N 1.46960 * 109.36005 * 58.40007 * 7 6 5 9 9 C 1.46902 * 110.99394 * 176.81219 * 8 7 6 10 10 C 1.50692 * 109.47349 * 293.79560 * 9 8 7 11 11 C 1.38636 * 119.75318 * 269.72747 * 10 9 8 12 12 C 1.37614 * 120.25409 * 179.75748 * 11 10 9 13 13 C 1.40716 * 119.74278 * 0.53816 * 12 11 10 14 14 C 1.41397 * 120.24759 * 179.74004 * 13 12 11 15 15 H 1.08003 * 120.00090 * 204.36483 * 14 13 12 16 16 C 1.39945 * 119.99793 * 24.36614 * 14 13 12 17 17 N 1.30822 * 119.99751 * 17.86164 * 16 14 13 18 18 Si 1.86797 * 119.99996 * 197.86139 * 16 14 13 19 19 H 1.48495 * 109.47418 * 60.00008 * 18 16 14 20 20 H 1.48496 * 109.46967 * 180.02562 * 18 16 14 21 21 H 1.48507 * 109.47125 * 299.99932 * 18 16 14 22 22 C 1.40724 * 119.51083 * 359.71976 * 13 12 11 23 23 C 1.37616 * 119.74257 * 359.97438 * 22 13 12 24 24 H 1.08994 * 109.47141 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47304 * 300.00394 * 1 2 3 26 26 H 1.09008 * 109.46726 * 60.00670 * 1 2 3 27 27 H 1.08998 * 109.49331 * 301.58496 * 4 2 1 28 28 H 1.09005 * 109.48850 * 61.64411 * 4 2 1 29 29 H 1.00906 * 111.00127 * 183.19420 * 5 4 2 30 30 H 1.09005 * 109.48727 * 60.64690 * 6 5 4 31 31 H 1.09000 * 109.48858 * 180.68580 * 6 5 4 32 32 H 1.09000 * 109.48967 * 178.35986 * 7 6 5 33 33 H 1.08998 * 109.49220 * 298.43345 * 7 6 5 34 34 H 1.08997 * 109.47482 * 53.80142 * 9 8 7 35 35 H 1.09009 * 109.46739 * 173.79596 * 9 8 7 36 36 H 1.08006 * 119.87386 * 0.02562 * 11 10 9 37 37 H 1.07995 * 120.13370 * 180.23430 * 12 11 10 38 38 H 0.97003 * 119.99913 * 179.97438 * 17 16 14 39 39 H 1.07994 * 120.12461 * 179.97438 * 22 13 12 40 40 H 1.07999 * 119.87276 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0407 -0.7225 -1.2488 5 7 3.5097 -0.7547 -1.2266 6 6 4.0004 -1.4483 -0.0276 7 6 3.4897 -0.7259 1.2213 8 7 2.0206 -0.6937 1.1991 9 6 1.4892 -0.0739 2.4203 10 6 1.8075 -0.9474 3.6063 11 6 0.9111 -1.9300 3.9974 12 6 1.1935 -2.7368 5.0758 13 6 2.3924 -2.5538 5.7895 14 6 2.6909 -3.3730 6.9027 15 1 3.3633 -3.0180 7.6696 16 6 2.1149 -4.6439 7.0105 17 7 1.5956 -5.2183 5.9561 18 14 2.0876 -5.5199 8.6601 19 1 1.3350 -4.7004 9.6435 20 1 1.4274 -6.8413 8.5078 21 1 3.4793 -5.7149 9.1402 22 6 3.2924 -1.5496 5.3869 23 6 2.9920 -0.7588 4.3015 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.6548 -1.7417 -1.2627 28 1 1.7020 -0.1929 -2.1394 29 1 3.8748 -1.1803 -2.0655 30 1 3.6367 -2.4759 -0.0275 31 1 5.0904 -1.4484 -0.0280 32 1 3.8284 -1.2555 2.1118 33 1 3.8756 0.2934 1.2352 34 1 1.9452 0.9064 2.5583 35 1 0.4085 0.0374 2.3306 36 1 -0.0105 -2.0658 3.4508 37 1 0.4956 -3.5041 5.3764 38 1 1.1967 -6.0993 6.0308 39 1 4.2152 -1.4003 5.9277 40 1 3.6810 0.0127 3.9909 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399222599.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:54 Heat of formation + Delta-G solvation = 4.349373 kcal Electronic energy + Delta-G solvation = -19515.282641 eV Core-core repulsion = 16714.253757 eV Total energy + Delta-G solvation = -2801.028885 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.51649 -39.12546 -36.14061 -35.09523 -33.44984 -31.93077 -31.07325 -29.07960 -27.85439 -26.35474 -24.11023 -23.20590 -22.63584 -21.55490 -20.48480 -19.19958 -17.55474 -17.18242 -16.68498 -16.14957 -15.80591 -15.67498 -15.61965 -15.08182 -14.96082 -14.55731 -14.12527 -13.81309 -13.71472 -13.35416 -12.99175 -12.95944 -12.75767 -12.70964 -12.54919 -12.32617 -12.14903 -11.98306 -11.78506 -11.49171 -11.30538 -11.18900 -10.96118 -9.52233 -9.32309 -9.28523 -9.04779 -8.62113 -6.31833 0.96982 1.16343 1.37540 1.48690 1.53352 2.21023 2.67303 3.12537 3.26430 3.78136 3.92351 4.03869 4.14008 4.30539 4.32875 4.39617 4.44352 4.51971 4.61075 4.64390 4.69461 4.81093 4.85221 4.92253 4.97533 5.06141 5.08369 5.16563 5.17371 5.36429 5.40892 5.48428 5.72579 5.89011 5.98091 6.10145 6.14200 6.30284 6.35695 6.40973 6.50044 6.72695 6.95981 7.06240 8.34498 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.033109 B = 0.004531 C = 0.004461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.478765 B = 6178.034596 C = 6275.370187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.078 3.922 3 H 0.039 0.961 4 C 0.067 3.933 5 N -0.692 5.692 6 C 0.064 3.936 7 C 0.059 3.941 8 N -0.542 5.542 9 C 0.122 3.878 10 C -0.193 4.193 11 C -0.085 4.085 12 C -0.191 4.191 13 C 0.080 3.920 14 C -0.504 4.504 15 H 0.074 0.926 16 C 0.036 3.964 17 N -0.826 5.826 18 Si 0.981 3.019 19 H -0.261 1.261 20 H -0.267 1.267 21 H -0.260 1.260 22 C -0.243 4.243 23 C -0.082 4.082 24 H 0.054 0.946 25 H 0.058 0.942 26 H 0.083 0.917 27 H 0.029 0.971 28 H 0.100 0.900 29 H 0.354 0.646 30 H 0.024 0.976 31 H 0.090 0.910 32 H 0.064 0.936 33 H 0.033 0.967 34 H 0.030 0.970 35 H 0.084 0.916 36 H 0.101 0.899 37 H 0.098 0.902 38 H 0.287 0.713 39 H 0.094 0.906 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.544 6.550 -11.510 13.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.030 4.030 3 H 0.057 0.943 4 C -0.063 4.063 5 N -0.325 5.325 6 C -0.066 4.066 7 C -0.069 4.069 8 N -0.268 5.268 9 C -0.005 4.005 10 C -0.194 4.194 11 C -0.104 4.104 12 C -0.210 4.210 13 C 0.078 3.922 14 C -0.534 4.534 15 H 0.092 0.908 16 C -0.179 4.179 17 N -0.453 5.453 18 Si 0.802 3.198 19 H -0.185 1.185 20 H -0.192 1.192 21 H -0.184 1.184 22 C -0.263 4.263 23 C -0.101 4.101 24 H 0.073 0.927 25 H 0.077 0.923 26 H 0.101 0.899 27 H 0.047 0.953 28 H 0.118 0.882 29 H 0.173 0.827 30 H 0.043 0.957 31 H 0.109 0.891 32 H 0.083 0.917 33 H 0.051 0.949 34 H 0.048 0.952 35 H 0.102 0.898 36 H 0.119 0.881 37 H 0.116 0.884 38 H 0.098 0.902 39 H 0.112 0.888 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -0.759 6.481 -11.367 13.107 hybrid contribution 0.212 -0.835 0.751 1.143 sum -0.547 5.646 -10.616 12.036 Atomic orbital electron populations 1.21864 0.93072 1.02379 1.02729 1.21756 0.96095 0.95459 0.89734 0.94261 1.22050 0.87490 0.99059 0.97679 1.60518 1.08842 1.57968 1.05135 1.21928 1.00014 0.94893 0.89767 1.22088 0.87826 0.98857 0.98127 1.62217 1.08275 1.54282 1.01984 1.20745 0.99906 0.93093 0.86748 1.19267 0.97282 1.02447 1.00421 1.20691 0.98428 0.95179 0.96083 1.21256 0.98082 1.01944 0.99754 1.17944 0.90798 0.91332 0.92176 1.19813 1.26483 1.00276 1.06808 0.90824 1.26744 0.92087 0.97751 1.01288 1.69890 1.29056 1.14849 1.31458 0.85274 0.79758 0.77328 0.77469 1.18492 1.19159 1.18375 1.21132 1.00025 1.03389 1.01708 1.20616 0.96077 0.98197 0.95198 0.92730 0.92322 0.89865 0.95254 0.88206 0.82691 0.95727 0.89139 0.91719 0.94922 0.95227 0.89809 0.88092 0.88403 0.90227 0.88790 0.87426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 8.89 71.98 0.64 -2.48 16 2 C 0.08 2.00 2.56 44.92 0.12 2.11 16 3 H 0.04 1.04 8.14 -2.38 -0.02 1.02 16 4 C 0.07 1.49 6.00 86.31 0.52 2.01 16 5 N -0.69 -15.72 6.90 -513.45 -3.54 -19.27 16 6 C 0.06 1.72 6.72 86.31 0.58 2.30 16 7 C 0.06 1.91 5.24 86.31 0.45 2.36 16 8 N -0.54 -17.57 4.52 -875.02 -3.95 -21.52 16 9 C 0.12 4.19 4.88 85.55 0.42 4.60 16 10 C -0.19 -8.27 4.92 -19.68 -0.10 -8.37 16 11 C -0.09 -4.04 9.67 22.22 0.21 -3.83 16 12 C -0.19 -10.37 8.70 22.73 0.20 -10.17 16 13 C 0.08 4.45 5.58 -21.29 -0.12 4.33 16 14 C -0.50 -28.04 9.05 23.46 0.21 -27.83 16 15 H 0.07 3.95 7.91 -2.91 -0.02 3.92 16 16 C 0.04 1.86 5.14 85.26 0.44 2.30 16 17 N -0.83 -44.56 10.95 21.83 0.24 -44.32 16 18 Si 0.98 39.07 29.60 68.60 2.03 41.10 16 19 H -0.26 -10.14 7.11 99.48 0.71 -9.44 16 20 H -0.27 -10.03 7.11 99.48 0.71 -9.32 16 21 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 22 C -0.24 -12.27 9.80 22.73 0.22 -12.04 16 23 C -0.08 -3.65 7.87 22.22 0.17 -3.48 16 24 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 25 H 0.06 1.32 6.15 -2.39 -0.01 1.30 16 26 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 27 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.10 1.71 8.14 -2.38 -0.02 1.69 16 29 H 0.35 6.27 8.90 -89.69 -0.80 5.47 16 30 H 0.02 0.74 8.14 -2.38 -0.02 0.72 16 31 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.06 2.42 5.94 -2.39 -0.01 2.41 16 33 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.03 0.98 8.06 -2.39 -0.02 0.96 16 35 H 0.08 2.68 5.67 -2.38 -0.01 2.66 16 36 H 0.10 4.39 8.06 -2.91 -0.02 4.36 16 37 H 0.10 5.58 6.16 -2.91 -0.02 5.56 16 38 H 0.29 14.02 8.30 -92.71 -0.77 13.25 16 39 H 0.09 4.52 8.06 -2.91 -0.02 4.49 16 40 H 0.11 4.18 7.98 -2.91 -0.02 4.16 16 Total: -1.00 -60.76 314.62 -1.03 -61.79 By element: Atomic # 1 Polarization: 30.17 SS G_CDS: 0.23 Total: 30.39 kcal Atomic # 6 Polarization: -52.15 SS G_CDS: 3.97 Total: -48.18 kcal Atomic # 7 Polarization: -77.85 SS G_CDS: -7.26 Total: -85.11 kcal Atomic # 14 Polarization: 39.07 SS G_CDS: 2.03 Total: 41.10 kcal Total: -60.76 -1.03 -61.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399222599.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.143 kcal (2) G-P(sol) polarization free energy of solvation -60.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds