Wall clock time and date at job start Mon Mar 30 2020 04:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46898 * 110.27730 * 2 1 4 4 C 1.46902 * 110.99754 * 60.63818 * 3 2 1 5 5 C 1.50703 * 109.47160 * 180.02562 * 4 3 2 6 6 C 1.38628 * 119.75406 * 89.99516 * 5 4 3 7 7 C 1.37617 * 120.25374 * 180.02562 * 6 5 4 8 8 C 1.40721 * 119.74019 * 359.97438 * 7 6 5 9 9 C 1.41394 * 120.24277 * 180.02562 * 8 7 6 10 10 H 1.08002 * 119.99904 * 207.11066 * 9 8 7 11 11 C 1.39946 * 120.00225 * 27.10522 * 9 8 7 12 12 N 1.30827 * 120.00040 * 196.96699 * 11 9 8 13 13 Si 1.86800 * 119.99776 * 16.96548 * 11 9 8 14 14 H 1.48498 * 109.47115 * 264.88338 * 13 11 9 15 15 H 1.48501 * 109.47381 * 24.88492 * 13 11 9 16 16 H 1.48508 * 109.47170 * 144.88832 * 13 11 9 17 17 C 1.40718 * 119.51148 * 0.26937 * 8 7 6 18 18 C 1.37618 * 119.74375 * 359.45682 * 17 8 7 19 19 C 1.54594 * 110.39399 * 237.85296 * 2 1 3 20 20 C 1.54933 * 102.92650 * 219.08630 * 19 2 1 21 21 N 1.48536 * 103.22441 * 37.41189 * 20 19 2 22 22 C 1.47897 * 105.82351 * 320.79617 * 21 20 19 23 23 H 1.08993 * 109.46758 * 60.69787 * 1 2 3 24 24 H 1.08993 * 109.47121 * 180.70287 * 1 2 3 25 25 H 1.09001 * 109.46746 * 300.69785 * 1 2 3 26 26 H 1.00897 * 110.99769 * 296.68513 * 3 2 1 27 27 H 1.09003 * 109.47551 * 60.00035 * 4 3 2 28 28 H 1.09003 * 109.46965 * 299.99595 * 4 3 2 29 29 H 1.08000 * 119.87573 * 359.97438 * 6 5 4 30 30 H 1.08003 * 120.13113 * 179.97438 * 7 6 5 31 31 H 0.97006 * 119.99523 * 180.02562 * 12 11 9 32 32 H 1.07997 * 120.12095 * 179.72818 * 17 8 7 33 33 H 1.07998 * 119.87441 * 180.27536 * 18 17 8 34 34 H 1.09003 * 110.72339 * 337.44366 * 19 2 1 35 35 H 1.08999 * 110.72443 * 100.72380 * 19 2 1 36 36 H 1.09007 * 110.66602 * 278.98123 * 20 19 2 37 37 H 1.09000 * 110.81421 * 155.91256 * 20 19 2 38 38 H 1.00907 * 110.99912 * 200.27737 * 21 20 19 39 39 H 1.09010 * 109.91421 * 265.98180 * 22 21 20 40 40 H 1.08999 * 110.08431 * 144.77657 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0391 1.3779 0.0000 4 6 1.5907 2.1048 1.1953 5 6 2.1308 3.5113 1.1600 6 6 1.3932 4.5164 0.5539 7 6 1.8767 5.8043 0.5153 8 6 3.1248 6.0989 1.0947 9 6 3.6315 7.4185 1.0616 10 1 4.6978 7.5883 1.0858 11 6 2.7514 8.5047 0.9975 12 7 3.1914 9.6827 0.6366 13 14 0.9484 8.2724 1.4270 14 1 0.1713 8.0276 0.1855 15 1 0.8026 7.1099 2.3395 16 1 0.4377 9.4952 2.0975 17 6 3.8671 5.0697 1.7027 18 6 3.3613 3.7902 1.7345 19 6 2.0687 -0.7710 -1.2269 20 6 3.2881 -1.5327 -0.6495 21 7 2.8333 -1.9216 0.7099 22 6 2.0645 -0.7673 1.2236 23 1 -0.3632 0.5029 -0.8961 24 1 -0.3633 -1.0275 0.0126 25 1 -0.3633 0.5247 0.8837 26 1 1.7676 1.8637 -0.8416 27 1 1.9565 1.5971 2.0878 28 1 0.5013 2.1347 1.2150 29 1 0.4358 4.2878 0.1095 30 1 1.3006 6.5857 0.0422 31 1 2.5813 10.4357 0.5925 32 1 4.8281 5.2839 2.1465 33 1 3.9272 2.9995 2.2045 34 1 1.3206 -1.4691 -1.6027 35 1 2.3809 -0.0801 -2.0100 36 1 4.1581 -0.8784 -0.5916 37 1 3.5118 -2.4160 -1.2477 38 1 3.6187 -2.1283 1.3087 39 1 2.7149 -0.1204 1.8124 40 1 1.2327 -1.1145 1.8366 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399286051.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:11 Heat of formation + Delta-G solvation = 18.053254 kcal Electronic energy + Delta-G solvation = -19214.152242 eV Core-core repulsion = 16413.717602 eV Total energy + Delta-G solvation = -2800.434640 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.44979 -37.86000 -35.00672 -33.55635 -31.48298 -29.72722 -29.59892 -29.06878 -26.32596 -25.41700 -23.15600 -21.72856 -21.38511 -19.95836 -19.11983 -17.42856 -16.79735 -15.88385 -15.45760 -14.95074 -14.69678 -13.96576 -13.86513 -13.61482 -13.50463 -13.14305 -13.01880 -12.62500 -12.34687 -12.19432 -11.89338 -11.86218 -11.54059 -11.42454 -11.13207 -10.97231 -10.76955 -10.70317 -10.55123 -10.21528 -9.77931 -9.55362 -9.13313 -8.60883 -8.17547 -7.70541 -7.53714 -6.97752 -4.49825 2.54125 2.70820 3.08000 3.20153 3.29923 3.95725 4.14623 4.35198 4.49800 4.61025 4.79658 4.99358 5.27215 5.34965 5.42823 5.48705 5.61471 5.66834 5.72994 5.73708 5.82147 5.89311 5.97544 5.99906 6.05482 6.11397 6.18885 6.21042 6.54797 6.64102 6.82795 6.89729 7.16871 7.18992 7.31672 7.42852 7.53899 7.67462 7.82586 7.87512 8.13043 8.33560 8.65246 8.78585 10.04632 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.039144 B = 0.004315 C = 0.004124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.133513 B = 6487.095941 C = 6787.385072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.098 3.902 3 N -0.672 5.672 4 C 0.119 3.881 5 C -0.217 4.217 6 C -0.068 4.068 7 C -0.242 4.242 8 C 0.095 3.905 9 C -0.445 4.445 10 H 0.090 0.910 11 C 0.082 3.918 12 N -0.809 5.809 13 Si 0.917 3.083 14 H -0.272 1.272 15 H -0.243 1.243 16 H -0.293 1.293 17 C -0.214 4.214 18 C -0.058 4.058 19 C -0.111 4.111 20 C 0.043 3.957 21 N -0.674 5.674 22 C 0.050 3.950 23 H 0.054 0.946 24 H 0.060 0.940 25 H 0.059 0.941 26 H 0.342 0.658 27 H 0.064 0.936 28 H 0.025 0.975 29 H 0.088 0.912 30 H 0.098 0.902 31 H 0.285 0.715 32 H 0.098 0.902 33 H 0.091 0.909 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.047 0.953 37 H 0.075 0.925 38 H 0.335 0.665 39 H 0.055 0.945 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.342 -16.254 -0.996 16.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.006 3.994 3 N -0.304 5.304 4 C -0.008 4.008 5 C -0.218 4.218 6 C -0.087 4.087 7 C -0.261 4.261 8 C 0.092 3.908 9 C -0.473 4.473 10 H 0.108 0.892 11 C -0.136 4.136 12 N -0.433 5.433 13 Si 0.744 3.256 14 H -0.199 1.199 15 H -0.167 1.167 16 H -0.221 1.221 17 C -0.233 4.233 18 C -0.077 4.077 19 C -0.149 4.149 20 C -0.087 4.087 21 N -0.303 5.303 22 C -0.080 4.080 23 H 0.073 0.927 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.161 0.839 27 H 0.082 0.918 28 H 0.043 0.957 29 H 0.106 0.894 30 H 0.115 0.885 31 H 0.096 0.904 32 H 0.117 0.883 33 H 0.110 0.890 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.066 0.934 37 H 0.093 0.907 38 H 0.150 0.850 39 H 0.073 0.927 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.280 -16.551 -0.966 17.123 hybrid contribution -0.985 1.049 0.064 1.440 sum -5.265 -15.502 -0.901 16.397 Atomic orbital electron populations 1.22494 0.96690 1.02167 1.02024 1.21769 0.92316 0.90170 0.95113 1.60906 1.62870 1.00824 1.05757 1.20619 0.95938 0.91843 0.92426 1.18905 0.98369 0.93024 1.11541 1.20412 0.97256 0.93253 0.97750 1.20932 1.00040 0.95703 1.09462 1.17738 0.90959 0.93599 0.88497 1.19557 0.96336 0.88867 1.42543 0.89219 1.26196 1.01736 0.94609 0.91096 1.69692 1.38805 1.01742 1.33016 0.86254 0.81163 0.78126 0.80025 1.19888 1.16662 1.22127 1.20976 1.01578 0.93363 1.07379 1.20428 0.94292 0.95381 0.97596 1.22544 0.97346 0.98240 0.96810 1.22949 0.96815 0.98400 0.90493 1.63097 1.25979 1.37161 1.04015 1.22770 0.98154 0.90882 0.96188 0.92666 0.92067 0.92187 0.83920 0.91773 0.95679 0.89406 0.88485 0.90429 0.88339 0.89041 0.90914 0.90609 0.93417 0.90661 0.84992 0.92714 0.90838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.93 8.01 37.16 0.30 -1.63 16 2 C 0.10 1.17 0.86 -130.24 -0.11 1.06 16 3 N -0.67 -9.61 6.02 -99.84 -0.60 -10.21 16 4 C 0.12 1.89 5.12 -4.97 -0.03 1.87 16 5 C -0.22 -4.30 5.41 -104.33 -0.56 -4.86 16 6 C -0.07 -1.44 9.67 -39.66 -0.38 -1.83 16 7 C -0.24 -5.83 7.08 -38.87 -0.28 -6.10 16 8 C 0.10 2.42 5.19 -106.82 -0.55 1.87 16 9 C -0.44 -12.10 9.59 -37.74 -0.36 -12.47 16 10 H 0.09 2.55 8.06 -52.49 -0.42 2.13 16 11 C 0.08 2.17 5.44 -17.34 -0.09 2.08 16 12 N -0.81 -21.63 13.93 55.55 0.77 -20.85 16 13 Si 0.92 20.98 24.41 -169.99 -4.15 16.83 16 14 H -0.27 -6.06 6.69 56.52 0.38 -5.68 16 15 H -0.24 -5.70 6.70 56.52 0.38 -5.32 16 16 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 17 C -0.21 -4.99 9.80 -38.87 -0.38 -5.37 16 18 C -0.06 -1.22 9.67 -39.66 -0.38 -1.60 16 19 C -0.11 -1.21 6.31 -24.87 -0.16 -1.37 16 20 C 0.04 0.45 7.55 -1.90 -0.01 0.44 16 21 N -0.67 -7.40 7.51 -110.08 -0.83 -8.22 16 22 C 0.05 0.59 6.33 -2.75 -0.02 0.57 16 23 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.06 0.69 6.46 -51.93 -0.34 0.36 16 26 H 0.34 4.98 8.71 -39.29 -0.34 4.64 16 27 H 0.06 0.99 6.39 -51.93 -0.33 0.66 16 28 H 0.03 0.39 6.31 -51.93 -0.33 0.06 16 29 H 0.09 1.65 8.06 -52.49 -0.42 1.23 16 30 H 0.10 2.34 4.26 -52.48 -0.22 2.12 16 31 H 0.29 6.90 8.30 -40.82 -0.34 6.56 16 32 H 0.10 2.20 8.06 -52.49 -0.42 1.77 16 33 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 34 H 0.07 0.74 7.87 -51.93 -0.41 0.33 16 35 H 0.08 0.83 8.00 -51.93 -0.42 0.41 16 36 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.34 3.23 8.92 -39.29 -0.35 2.88 16 39 H 0.05 0.71 6.54 -51.92 -0.34 0.37 16 40 H 0.07 0.84 7.68 -51.93 -0.40 0.44 16 LS Contribution 312.62 15.07 4.71 4.71 Total: -1.00 -26.96 312.62 -9.16 -36.11 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: -6.04 Total: 8.97 kcal Atomic # 6 Polarization: -24.31 SS G_CDS: -3.03 Total: -27.34 kcal Atomic # 7 Polarization: -38.64 SS G_CDS: -0.65 Total: -39.29 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.15 Total: 16.83 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -26.96 -9.16 -36.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399286051.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.167 kcal (2) G-P(sol) polarization free energy of solvation -26.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds