Wall clock time and date at job start Mon Mar 30 2020 04:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46898 * 110.27730 * 2 1 4 4 C 1.46902 * 110.99754 * 60.63818 * 3 2 1 5 5 C 1.50703 * 109.47160 * 180.02562 * 4 3 2 6 6 C 1.38628 * 119.75406 * 89.99516 * 5 4 3 7 7 C 1.37617 * 120.25374 * 180.02562 * 6 5 4 8 8 C 1.40721 * 119.74019 * 359.97438 * 7 6 5 9 9 C 1.41394 * 120.24277 * 180.02562 * 8 7 6 10 10 H 1.08002 * 119.99904 * 207.11066 * 9 8 7 11 11 C 1.39946 * 120.00225 * 27.10522 * 9 8 7 12 12 N 1.30827 * 120.00040 * 196.96699 * 11 9 8 13 13 Si 1.86800 * 119.99776 * 16.96548 * 11 9 8 14 14 H 1.48498 * 109.47115 * 264.88338 * 13 11 9 15 15 H 1.48501 * 109.47381 * 24.88492 * 13 11 9 16 16 H 1.48508 * 109.47170 * 144.88832 * 13 11 9 17 17 C 1.40718 * 119.51148 * 0.26937 * 8 7 6 18 18 C 1.37618 * 119.74375 * 359.45682 * 17 8 7 19 19 C 1.54594 * 110.39399 * 237.85296 * 2 1 3 20 20 C 1.54933 * 102.92650 * 219.08630 * 19 2 1 21 21 N 1.48536 * 103.22441 * 37.41189 * 20 19 2 22 22 C 1.47897 * 105.82351 * 320.79617 * 21 20 19 23 23 H 1.08993 * 109.46758 * 60.69787 * 1 2 3 24 24 H 1.08993 * 109.47121 * 180.70287 * 1 2 3 25 25 H 1.09001 * 109.46746 * 300.69785 * 1 2 3 26 26 H 1.00897 * 110.99769 * 296.68513 * 3 2 1 27 27 H 1.09003 * 109.47551 * 60.00035 * 4 3 2 28 28 H 1.09003 * 109.46965 * 299.99595 * 4 3 2 29 29 H 1.08000 * 119.87573 * 359.97438 * 6 5 4 30 30 H 1.08003 * 120.13113 * 179.97438 * 7 6 5 31 31 H 0.97006 * 119.99523 * 180.02562 * 12 11 9 32 32 H 1.07997 * 120.12095 * 179.72818 * 17 8 7 33 33 H 1.07998 * 119.87441 * 180.27536 * 18 17 8 34 34 H 1.09003 * 110.72339 * 337.44366 * 19 2 1 35 35 H 1.08999 * 110.72443 * 100.72380 * 19 2 1 36 36 H 1.09007 * 110.66602 * 278.98123 * 20 19 2 37 37 H 1.09000 * 110.81421 * 155.91256 * 20 19 2 38 38 H 1.00907 * 110.99912 * 200.27737 * 21 20 19 39 39 H 1.09010 * 109.91421 * 265.98180 * 22 21 20 40 40 H 1.08999 * 110.08431 * 144.77657 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0391 1.3779 0.0000 4 6 1.5907 2.1048 1.1953 5 6 2.1308 3.5113 1.1600 6 6 1.3932 4.5164 0.5539 7 6 1.8767 5.8043 0.5153 8 6 3.1248 6.0989 1.0947 9 6 3.6315 7.4185 1.0616 10 1 4.6978 7.5883 1.0858 11 6 2.7514 8.5047 0.9975 12 7 3.1914 9.6827 0.6366 13 14 0.9484 8.2724 1.4270 14 1 0.1713 8.0276 0.1855 15 1 0.8026 7.1099 2.3395 16 1 0.4377 9.4952 2.0975 17 6 3.8671 5.0697 1.7027 18 6 3.3613 3.7902 1.7345 19 6 2.0687 -0.7710 -1.2269 20 6 3.2881 -1.5327 -0.6495 21 7 2.8333 -1.9216 0.7099 22 6 2.0645 -0.7673 1.2236 23 1 -0.3632 0.5029 -0.8961 24 1 -0.3633 -1.0275 0.0126 25 1 -0.3633 0.5247 0.8837 26 1 1.7676 1.8637 -0.8416 27 1 1.9565 1.5971 2.0878 28 1 0.5013 2.1347 1.2150 29 1 0.4358 4.2878 0.1095 30 1 1.3006 6.5857 0.0422 31 1 2.5813 10.4357 0.5925 32 1 4.8281 5.2839 2.1465 33 1 3.9272 2.9995 2.2045 34 1 1.3206 -1.4691 -1.6027 35 1 2.3809 -0.0801 -2.0100 36 1 4.1581 -0.8784 -0.5916 37 1 3.5118 -2.4160 -1.2477 38 1 3.6187 -2.1283 1.3087 39 1 2.7149 -0.1204 1.8124 40 1 1.2327 -1.1145 1.8366 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399286051.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:11 Heat of formation + Delta-G solvation = -0.616781 kcal Electronic energy + Delta-G solvation = -19214.961835 eV Core-core repulsion = 16413.717602 eV Total energy + Delta-G solvation = -2801.244233 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.48995 -39.51768 -36.31562 -35.24763 -32.96166 -31.50903 -30.83708 -30.04313 -27.80857 -26.42312 -24.68799 -23.38834 -22.49986 -21.60142 -20.08669 -19.35493 -17.84727 -17.47799 -16.47155 -16.27167 -16.15280 -15.64283 -15.30611 -14.98180 -14.75502 -14.46237 -14.09979 -14.06113 -13.92444 -13.57984 -13.20214 -13.06885 -12.76543 -12.58807 -12.49475 -12.38837 -12.10975 -12.02442 -11.95821 -11.54760 -11.52804 -11.38191 -10.95332 -9.53237 -9.47441 -9.41057 -9.18883 -8.91914 -6.50461 0.75876 0.89335 1.23957 1.39455 1.47666 2.10371 2.54973 3.22230 3.46791 3.57875 3.66315 3.90615 4.10345 4.19427 4.24458 4.39402 4.43207 4.51266 4.55964 4.68909 4.70843 4.75082 4.80233 4.90417 5.00254 5.02909 5.06169 5.09219 5.14784 5.15914 5.28052 5.32703 5.62128 5.74260 5.77923 5.90008 6.06097 6.22819 6.25775 6.41120 6.41931 6.54110 6.74520 6.83250 8.16912 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.039144 B = 0.004315 C = 0.004124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.133513 B = 6487.095941 C = 6787.385072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.098 3.902 3 N -0.678 5.678 4 C 0.126 3.874 5 C -0.191 4.191 6 C -0.073 4.073 7 C -0.253 4.253 8 C 0.073 3.927 9 C -0.486 4.486 10 H 0.053 0.947 11 C 0.045 3.955 12 N -0.852 5.852 13 Si 0.972 3.028 14 H -0.259 1.259 15 H -0.252 1.252 16 H -0.280 1.280 17 C -0.227 4.227 18 C -0.060 4.060 19 C -0.110 4.110 20 C 0.043 3.957 21 N -0.675 5.675 22 C 0.050 3.950 23 H 0.058 0.942 24 H 0.070 0.930 25 H 0.056 0.944 26 H 0.342 0.658 27 H 0.073 0.927 28 H 0.040 0.960 29 H 0.120 0.880 30 H 0.094 0.906 31 H 0.294 0.706 32 H 0.096 0.904 33 H 0.118 0.882 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.036 0.964 37 H 0.089 0.911 38 H 0.342 0.658 39 H 0.042 0.958 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.526 -19.357 -1.077 20.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.007 3.993 3 N -0.310 5.310 4 C -0.002 4.002 5 C -0.192 4.192 6 C -0.091 4.091 7 C -0.272 4.272 8 C 0.070 3.930 9 C -0.516 4.516 10 H 0.071 0.929 11 C -0.169 4.169 12 N -0.479 5.479 13 Si 0.797 3.203 14 H -0.185 1.185 15 H -0.175 1.175 16 H -0.207 1.207 17 C -0.247 4.247 18 C -0.079 4.079 19 C -0.148 4.148 20 C -0.087 4.087 21 N -0.304 5.304 22 C -0.080 4.080 23 H 0.077 0.923 24 H 0.089 0.911 25 H 0.075 0.925 26 H 0.160 0.840 27 H 0.091 0.909 28 H 0.058 0.942 29 H 0.138 0.862 30 H 0.112 0.888 31 H 0.104 0.896 32 H 0.115 0.885 33 H 0.136 0.864 34 H 0.102 0.898 35 H 0.093 0.907 36 H 0.055 0.945 37 H 0.107 0.893 38 H 0.158 0.842 39 H 0.061 0.939 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.453 -19.670 -1.050 20.729 hybrid contribution -0.254 1.703 0.088 1.724 sum -6.707 -17.968 -0.963 19.203 Atomic orbital electron populations 1.22440 0.95632 1.02822 1.02022 1.21832 0.93081 0.88673 0.95757 1.60809 1.63375 1.01806 1.04996 1.20546 0.96627 0.89396 0.93654 1.19435 0.97013 0.95000 1.07787 1.20773 0.98648 0.92193 0.97496 1.21059 0.99539 0.97120 1.09517 1.17875 0.92276 0.93248 0.89573 1.19536 0.94953 0.90749 1.46371 0.92893 1.26865 1.05259 0.94055 0.90702 1.69723 1.40387 1.02593 1.35155 0.85405 0.76873 0.78063 0.80004 1.18483 1.17545 1.20707 1.21163 1.01700 0.94280 1.07506 1.20747 0.94941 0.94878 0.97286 1.22558 0.97622 0.98280 0.96324 1.22976 0.96306 0.98805 0.90565 1.63120 1.26420 1.36609 1.04289 1.22762 0.98207 0.90962 0.96050 0.92330 0.91142 0.92488 0.83959 0.90859 0.94227 0.86196 0.88806 0.89593 0.88533 0.86408 0.89833 0.90721 0.94548 0.89264 0.84203 0.93917 0.90276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.09 8.01 71.98 0.58 -2.51 16 2 C 0.10 2.00 0.86 4.41 0.00 2.00 16 3 N -0.68 -17.00 6.02 -469.78 -2.83 -19.83 16 4 C 0.13 3.47 5.12 85.56 0.44 3.91 16 5 C -0.19 -6.95 5.41 -19.68 -0.11 -7.06 16 6 C -0.07 -2.87 9.67 22.22 0.21 -2.65 16 7 C -0.25 -11.95 7.08 22.73 0.16 -11.79 16 8 C 0.07 3.78 5.19 -21.29 -0.11 3.67 16 9 C -0.49 -27.98 9.59 23.46 0.23 -27.76 16 10 H 0.05 3.28 8.06 -2.91 -0.02 3.26 16 11 C 0.05 2.47 5.44 85.26 0.46 2.94 16 12 N -0.85 -47.60 13.93 21.83 0.30 -47.30 16 13 Si 0.97 43.52 24.41 68.60 1.67 45.19 16 14 H -0.26 -10.92 6.69 99.48 0.67 -10.25 16 15 H -0.25 -11.45 6.70 99.48 0.67 -10.78 16 16 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 17 C -0.23 -10.66 9.80 22.73 0.22 -10.44 16 18 C -0.06 -2.38 9.67 22.22 0.21 -2.16 16 19 C -0.11 -2.03 6.31 31.80 0.20 -1.83 16 20 C 0.04 0.79 7.55 86.65 0.65 1.44 16 21 N -0.68 -12.82 7.51 -502.18 -3.77 -16.60 16 22 C 0.05 1.02 6.33 86.45 0.55 1.57 16 23 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 25 H 0.06 1.07 6.46 -2.39 -0.02 1.06 16 26 H 0.34 8.74 8.71 -89.70 -0.78 7.96 16 27 H 0.07 1.95 6.39 -2.39 -0.02 1.94 16 28 H 0.04 1.02 6.31 -2.39 -0.02 1.01 16 29 H 0.12 3.98 8.06 -2.91 -0.02 3.96 16 30 H 0.09 4.44 4.26 -2.91 -0.01 4.43 16 31 H 0.29 14.69 8.30 -92.70 -0.77 13.92 16 32 H 0.10 4.44 8.06 -2.91 -0.02 4.42 16 33 H 0.12 4.05 8.06 -2.91 -0.02 4.03 16 34 H 0.08 1.39 7.87 -2.39 -0.02 1.37 16 35 H 0.07 1.41 8.00 -2.39 -0.02 1.39 16 36 H 0.04 0.75 8.14 -2.38 -0.02 0.73 16 37 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.34 5.72 8.92 -89.69 -0.80 4.92 16 39 H 0.04 0.98 6.54 -2.38 -0.02 0.96 16 40 H 0.08 1.54 7.68 -2.39 -0.02 1.52 16 Total: -1.00 -59.34 312.62 -1.53 -60.87 By element: Atomic # 1 Polarization: 28.95 SS G_CDS: -0.61 Total: 28.33 kcal Atomic # 6 Polarization: -54.37 SS G_CDS: 3.70 Total: -50.67 kcal Atomic # 7 Polarization: -77.43 SS G_CDS: -6.30 Total: -83.73 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 1.67 Total: 45.19 kcal Total: -59.34 -1.53 -60.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399286051.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.252 kcal (2) G-P(sol) polarization free energy of solvation -59.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds