Wall clock time and date at job start Mon Mar 30 2020 04:32:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46904 * 110.28769 * 2 1 4 4 C 1.54259 * 110.32656 * 237.87570 * 2 1 3 5 5 C 1.54377 * 105.15168 * 240.94758 * 4 2 1 6 6 N 1.48718 * 104.51570 * 336.26940 * 5 4 2 7 7 C 1.46901 * 111.01613 * 158.96810 * 6 5 4 8 8 C 1.50699 * 109.47365 * 74.48803 * 7 6 5 9 9 C 1.38638 * 119.74652 * 269.72588 * 8 7 6 10 10 C 1.37621 * 120.24373 * 179.76427 * 9 8 7 11 11 C 1.40709 * 119.74718 * 0.48636 * 10 9 8 12 12 C 1.41398 * 120.24730 * 179.79249 * 11 10 9 13 13 H 1.07997 * 119.99563 * 24.36880 * 12 11 10 14 14 C 1.39939 * 120.00239 * 204.37836 * 12 11 10 15 15 N 1.30833 * 119.99996 * 17.85519 * 14 12 11 16 16 Si 1.86798 * 120.00113 * 197.85846 * 14 12 11 17 17 H 1.48503 * 109.47109 * 59.99933 * 16 14 12 18 18 H 1.48506 * 109.46995 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47014 * 299.99713 * 16 14 12 20 20 C 1.40718 * 119.50985 * 359.76920 * 11 10 9 21 21 C 1.37610 * 119.74749 * 359.97438 * 20 11 10 22 22 C 1.48557 * 104.28992 * 39.36271 * 6 5 4 23 23 H 1.09004 * 109.46646 * 180.67195 * 1 2 3 24 24 H 1.09001 * 109.47163 * 300.66965 * 1 2 3 25 25 H 1.08997 * 109.46820 * 60.67195 * 1 2 3 26 26 H 1.00902 * 111.00068 * 299.33185 * 3 2 1 27 27 H 1.00909 * 110.99761 * 63.28193 * 3 2 1 28 28 H 1.09006 * 110.32219 * 359.89548 * 4 2 1 29 29 H 1.09007 * 110.32543 * 122.00138 * 4 2 1 30 30 H 1.09001 * 110.41079 * 94.97148 * 5 4 2 31 31 H 1.09004 * 110.41360 * 217.41844 * 5 4 2 32 32 H 1.08997 * 109.47472 * 194.49145 * 7 6 5 33 33 H 1.09002 * 109.46851 * 314.48569 * 7 6 5 34 34 H 1.07998 * 119.87892 * 359.97438 * 9 8 7 35 35 H 1.07996 * 120.12413 * 180.28273 * 10 9 8 36 36 H 0.97000 * 119.99898 * 180.02562 * 15 14 12 37 37 H 1.08006 * 120.12369 * 179.97438 * 20 11 10 38 38 H 1.08004 * 119.87934 * 179.97438 * 21 20 11 39 39 H 1.09002 * 110.40828 * 201.80025 * 22 6 5 40 40 H 1.08990 * 110.41233 * 79.35354 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0394 1.3779 0.0000 4 6 2.0658 -0.7692 -1.2251 5 6 2.8845 -1.9399 -0.6400 6 7 3.2721 -1.4805 0.7204 7 6 3.6121 -2.6192 1.5840 8 6 4.9622 -3.1618 1.1917 9 6 5.0502 -4.1628 0.2366 10 6 6.2782 -4.6623 -0.1328 11 6 7.4463 -4.1604 0.4703 12 6 8.7131 -4.6691 0.1019 13 1 8.8506 -5.1257 -0.8672 14 6 9.7885 -4.5811 0.9929 15 7 9.5688 -4.3620 2.2639 16 14 11.5379 -4.7765 0.3676 17 1 11.8225 -3.7263 -0.6431 18 1 12.4869 -4.6414 1.5018 19 1 11.6950 -6.1163 -0.2530 20 6 7.3444 -3.1482 1.4424 21 6 6.1064 -2.6598 1.7925 22 6 2.0684 -0.7707 1.2245 23 1 -0.3633 -1.0277 0.0121 24 1 -0.3633 0.5242 0.8839 25 1 -0.3633 0.5034 -0.8959 26 1 1.7319 1.8771 -0.8212 27 1 1.7674 1.8639 0.8415 28 1 1.2388 -1.1484 -1.8254 29 1 2.7053 -0.1238 -1.8274 30 1 2.2710 -2.8386 -0.5767 31 1 3.7705 -2.1253 -1.2473 32 1 3.6402 -2.2915 2.6231 33 1 2.8596 -3.3995 1.4694 34 1 4.1521 -4.5496 -0.2217 35 1 6.3448 -5.4389 -0.8804 36 1 10.3143 -4.3006 2.8814 37 1 8.2344 -2.7560 1.9120 38 1 6.0257 -1.8832 2.5387 39 1 2.3414 -0.0774 2.0201 40 1 1.3266 -1.4857 1.5800 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000405743692.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:44 Heat of formation + Delta-G solvation = 17.372037 kcal Electronic energy + Delta-G solvation = -19166.527363 eV Core-core repulsion = 16366.063183 eV Total energy + Delta-G solvation = -2800.464179 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.31690 -37.44028 -34.84993 -33.42867 -30.86237 -29.44514 -29.19704 -28.80238 -26.92604 -24.98905 -23.32146 -21.15216 -20.79912 -19.84163 -19.17771 -17.21679 -16.02928 -15.42161 -15.30317 -15.12618 -14.56409 -14.02592 -13.87626 -13.52449 -13.10036 -12.99903 -12.84640 -12.48387 -12.04242 -11.94192 -11.80340 -11.45600 -11.32442 -11.03595 -10.98246 -10.92049 -10.82756 -10.60828 -10.32804 -10.25012 -9.51812 -9.29136 -9.05786 -8.69829 -7.97691 -7.35164 -7.21263 -6.69395 -4.27535 2.82421 3.10271 3.13108 3.16350 3.25155 3.98212 4.33499 4.48083 4.53053 4.75102 4.86718 5.09295 5.26965 5.37839 5.46858 5.65356 5.74303 5.77736 5.81875 5.85430 5.92383 5.99134 6.03812 6.24809 6.29214 6.38576 6.44743 6.52847 7.03154 7.10304 7.15094 7.30574 7.38645 7.40885 7.46197 7.53883 7.70063 7.95914 8.13152 8.23867 8.38170 8.72479 8.97110 9.06257 10.25236 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.042096 B = 0.003936 C = 0.003914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.993494 B = 7112.179228 C = 7152.337878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.111 3.889 3 N -0.826 5.826 4 C -0.114 4.114 5 C 0.042 3.958 6 N -0.490 5.490 7 C 0.108 3.892 8 C -0.202 4.202 9 C -0.084 4.084 10 C -0.228 4.228 11 C 0.112 3.888 12 C -0.465 4.465 13 H 0.076 0.924 14 C 0.077 3.923 15 N -0.794 5.794 16 Si 0.907 3.093 17 H -0.264 1.264 18 H -0.279 1.279 19 H -0.266 1.266 20 C -0.166 4.166 21 C -0.079 4.079 22 C 0.043 3.957 23 H 0.060 0.940 24 H 0.054 0.946 25 H 0.055 0.945 26 H 0.336 0.664 27 H 0.337 0.663 28 H 0.062 0.938 29 H 0.079 0.921 30 H 0.035 0.965 31 H 0.085 0.915 32 H 0.064 0.936 33 H 0.024 0.976 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.280 0.720 37 H 0.117 0.883 38 H 0.086 0.914 39 H 0.078 0.922 40 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.421 7.064 -2.443 15.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.018 3.982 3 N -0.355 5.355 4 C -0.153 4.153 5 C -0.086 4.086 6 N -0.214 5.214 7 C -0.019 4.019 8 C -0.204 4.204 9 C -0.103 4.103 10 C -0.247 4.247 11 C 0.110 3.890 12 C -0.495 4.495 13 H 0.094 0.906 14 C -0.141 4.141 15 N -0.420 5.420 16 Si 0.731 3.269 17 H -0.188 1.188 18 H -0.204 1.204 19 H -0.191 1.191 20 C -0.186 4.186 21 C -0.098 4.098 22 C -0.086 4.086 23 H 0.079 0.921 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.149 0.851 27 H 0.150 0.850 28 H 0.081 0.919 29 H 0.097 0.903 30 H 0.053 0.947 31 H 0.103 0.897 32 H 0.082 0.918 33 H 0.042 0.958 34 H 0.099 0.901 35 H 0.107 0.893 36 H 0.091 0.909 37 H 0.134 0.866 38 H 0.104 0.896 39 H 0.097 0.903 40 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -12.087 7.078 -2.215 14.181 hybrid contribution -0.942 -0.441 -0.088 1.043 sum -13.029 6.637 -2.303 14.802 Atomic orbital electron populations 1.22638 0.97049 1.02431 1.01478 1.21531 0.90790 0.89761 0.96133 1.58865 1.67221 1.02364 1.07044 1.22438 0.99099 0.97245 0.96495 1.23040 0.98713 0.94993 0.91883 1.65541 1.30535 1.23568 1.01726 1.20916 0.95047 0.90103 0.95820 1.18798 0.92751 1.03628 1.05192 1.20320 0.95838 0.96973 0.97158 1.20912 0.92472 1.04499 1.06860 1.17600 0.92107 0.89223 0.90086 1.19550 0.93580 1.34698 1.01664 0.90625 1.25889 1.01412 0.92573 0.94194 1.69829 1.33961 1.35419 1.02769 0.86399 0.81260 0.79862 0.79353 1.18840 1.20389 1.19097 1.21299 0.95992 0.98961 1.02332 1.20481 0.92764 0.98060 0.98537 1.23123 0.92086 0.96914 0.96452 0.92084 0.92727 0.92609 0.85116 0.85029 0.91891 0.90259 0.94675 0.89660 0.91798 0.95785 0.90092 0.89276 0.90919 0.86561 0.89575 0.90346 0.94351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.58 8.54 37.16 0.32 -1.26 16 2 C 0.11 1.27 1.24 -130.22 -0.16 1.11 16 3 N -0.83 -8.92 8.81 1.86 0.02 -8.90 16 4 C -0.11 -1.44 6.42 -25.35 -0.16 -1.60 16 5 C 0.04 0.65 5.71 -2.09 -0.01 0.64 16 6 N -0.49 -8.34 5.32 -231.28 -1.23 -9.58 16 7 C 0.11 1.99 4.97 -4.98 -0.02 1.97 16 8 C -0.20 -4.52 5.21 -104.33 -0.54 -5.06 16 9 C -0.08 -1.92 8.91 -39.66 -0.35 -2.27 16 10 C -0.23 -5.74 9.80 -38.87 -0.38 -6.12 16 11 C 0.11 3.08 5.57 -106.83 -0.60 2.48 16 12 C -0.47 -12.66 9.05 -37.74 -0.34 -13.01 16 13 H 0.08 1.98 7.91 -52.49 -0.42 1.56 16 14 C 0.08 1.97 5.14 -17.34 -0.09 1.88 16 15 N -0.79 -20.98 10.95 55.55 0.61 -20.37 16 16 Si 0.91 19.07 29.59 -169.99 -5.03 14.04 16 17 H -0.26 -5.52 7.11 56.52 0.40 -5.12 16 18 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 19 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 20 C -0.17 -4.46 8.70 -38.87 -0.34 -4.80 16 21 C -0.08 -1.93 9.67 -39.66 -0.38 -2.31 16 22 C 0.04 0.58 5.71 -2.18 -0.01 0.57 16 23 H 0.06 0.56 8.13 -51.93 -0.42 0.13 16 24 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.34 3.02 9.04 -39.29 -0.36 2.66 16 27 H 0.34 3.13 8.97 -39.29 -0.35 2.78 16 28 H 0.06 0.67 7.71 -51.93 -0.40 0.27 16 29 H 0.08 1.05 7.95 -51.93 -0.41 0.64 16 30 H 0.04 0.53 7.75 -51.93 -0.40 0.12 16 31 H 0.09 1.51 7.91 -51.93 -0.41 1.10 16 32 H 0.06 1.14 8.02 -51.93 -0.42 0.72 16 33 H 0.02 0.42 7.71 -51.93 -0.40 0.02 16 34 H 0.08 1.64 8.06 -52.49 -0.42 1.22 16 35 H 0.09 2.12 8.06 -52.49 -0.42 1.70 16 36 H 0.28 6.74 8.30 -40.82 -0.34 6.40 16 37 H 0.12 3.22 6.15 -52.48 -0.32 2.90 16 38 H 0.09 1.95 8.06 -52.48 -0.42 1.52 16 39 H 0.08 1.07 7.99 -51.93 -0.41 0.65 16 40 H 0.04 0.49 7.71 -51.93 -0.40 0.09 16 LS Contribution 322.35 15.07 4.86 4.86 Total: -1.00 -28.48 322.35 -10.24 -38.72 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: -6.37 Total: 9.02 kcal Atomic # 6 Polarization: -24.70 SS G_CDS: -3.08 Total: -27.78 kcal Atomic # 7 Polarization: -38.25 SS G_CDS: -0.61 Total: -38.85 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.03 Total: 14.04 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -28.48 -10.24 -38.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405743692.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.092 kcal (2) G-P(sol) polarization free energy of solvation -28.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds