Wall clock time and date at job start Mon Mar 30 2020 04:32:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46904 * 110.28769 * 2 1 4 4 C 1.54259 * 110.32656 * 237.87570 * 2 1 3 5 5 C 1.54377 * 105.15168 * 240.94758 * 4 2 1 6 6 N 1.48718 * 104.51570 * 336.26940 * 5 4 2 7 7 C 1.46901 * 111.01613 * 158.96810 * 6 5 4 8 8 C 1.50699 * 109.47365 * 74.48803 * 7 6 5 9 9 C 1.38638 * 119.74652 * 269.72588 * 8 7 6 10 10 C 1.37621 * 120.24373 * 179.76427 * 9 8 7 11 11 C 1.40709 * 119.74718 * 0.48636 * 10 9 8 12 12 C 1.41398 * 120.24730 * 179.79249 * 11 10 9 13 13 H 1.07997 * 119.99563 * 24.36880 * 12 11 10 14 14 C 1.39939 * 120.00239 * 204.37836 * 12 11 10 15 15 N 1.30833 * 119.99996 * 17.85519 * 14 12 11 16 16 Si 1.86798 * 120.00113 * 197.85846 * 14 12 11 17 17 H 1.48503 * 109.47109 * 59.99933 * 16 14 12 18 18 H 1.48506 * 109.46995 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47014 * 299.99713 * 16 14 12 20 20 C 1.40718 * 119.50985 * 359.76920 * 11 10 9 21 21 C 1.37610 * 119.74749 * 359.97438 * 20 11 10 22 22 C 1.48557 * 104.28992 * 39.36271 * 6 5 4 23 23 H 1.09004 * 109.46646 * 180.67195 * 1 2 3 24 24 H 1.09001 * 109.47163 * 300.66965 * 1 2 3 25 25 H 1.08997 * 109.46820 * 60.67195 * 1 2 3 26 26 H 1.00902 * 111.00068 * 299.33185 * 3 2 1 27 27 H 1.00909 * 110.99761 * 63.28193 * 3 2 1 28 28 H 1.09006 * 110.32219 * 359.89548 * 4 2 1 29 29 H 1.09007 * 110.32543 * 122.00138 * 4 2 1 30 30 H 1.09001 * 110.41079 * 94.97148 * 5 4 2 31 31 H 1.09004 * 110.41360 * 217.41844 * 5 4 2 32 32 H 1.08997 * 109.47472 * 194.49145 * 7 6 5 33 33 H 1.09002 * 109.46851 * 314.48569 * 7 6 5 34 34 H 1.07998 * 119.87892 * 359.97438 * 9 8 7 35 35 H 1.07996 * 120.12413 * 180.28273 * 10 9 8 36 36 H 0.97000 * 119.99898 * 180.02562 * 15 14 12 37 37 H 1.08006 * 120.12369 * 179.97438 * 20 11 10 38 38 H 1.08004 * 119.87934 * 179.97438 * 21 20 11 39 39 H 1.09002 * 110.40828 * 201.80025 * 22 6 5 40 40 H 1.08990 * 110.41233 * 79.35354 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0394 1.3779 0.0000 4 6 2.0658 -0.7692 -1.2251 5 6 2.8845 -1.9399 -0.6400 6 7 3.2721 -1.4805 0.7204 7 6 3.6121 -2.6192 1.5840 8 6 4.9622 -3.1618 1.1917 9 6 5.0502 -4.1628 0.2366 10 6 6.2782 -4.6623 -0.1328 11 6 7.4463 -4.1604 0.4703 12 6 8.7131 -4.6691 0.1019 13 1 8.8506 -5.1257 -0.8672 14 6 9.7885 -4.5811 0.9929 15 7 9.5688 -4.3620 2.2639 16 14 11.5379 -4.7765 0.3676 17 1 11.8225 -3.7263 -0.6431 18 1 12.4869 -4.6414 1.5018 19 1 11.6950 -6.1163 -0.2530 20 6 7.3444 -3.1482 1.4424 21 6 6.1064 -2.6598 1.7925 22 6 2.0684 -0.7707 1.2245 23 1 -0.3633 -1.0277 0.0121 24 1 -0.3633 0.5242 0.8839 25 1 -0.3633 0.5034 -0.8959 26 1 1.7319 1.8771 -0.8212 27 1 1.7674 1.8639 0.8415 28 1 1.2388 -1.1484 -1.8254 29 1 2.7053 -0.1238 -1.8274 30 1 2.2710 -2.8386 -0.5767 31 1 3.7705 -2.1253 -1.2473 32 1 3.6402 -2.2915 2.6231 33 1 2.8596 -3.3995 1.4694 34 1 4.1521 -4.5496 -0.2217 35 1 6.3448 -5.4389 -0.8804 36 1 10.3143 -4.3006 2.8814 37 1 8.2344 -2.7560 1.9120 38 1 6.0257 -1.8832 2.5387 39 1 2.3414 -0.0774 2.0201 40 1 1.3266 -1.4857 1.5800 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000405743692.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:44 Heat of formation + Delta-G solvation = -1.163222 kcal Electronic energy + Delta-G solvation = -19167.331112 eV Core-core repulsion = 16366.063183 eV Total energy + Delta-G solvation = -2801.267929 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.49022 -39.22041 -36.25333 -35.10851 -32.40458 -31.13223 -30.81789 -29.66103 -28.45485 -26.34255 -24.82388 -22.85735 -22.42875 -21.42269 -20.25596 -19.19334 -17.25391 -16.98191 -16.50096 -16.19808 -16.05224 -15.66927 -15.54369 -14.96597 -14.43120 -14.20950 -13.88677 -13.79276 -13.75730 -13.44742 -13.12655 -13.01779 -12.81078 -12.61175 -12.56997 -12.20805 -12.07829 -11.95787 -11.83642 -11.54966 -11.35444 -11.19514 -10.98102 -9.51123 -9.32033 -9.30687 -9.09538 -8.61537 -6.30802 0.98319 1.17723 1.37814 1.49299 1.54358 2.21798 2.70788 3.26639 3.58727 3.63777 3.80525 3.85231 4.17371 4.30534 4.31296 4.33280 4.51217 4.56830 4.58609 4.70399 4.77470 4.78911 4.86002 4.93672 5.01029 5.07784 5.13846 5.17519 5.22294 5.27512 5.40403 5.49508 5.73387 5.92564 6.06683 6.12737 6.21150 6.33224 6.41603 6.45156 6.71821 6.73504 6.96697 7.07218 8.35571 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.042096 B = 0.003936 C = 0.003914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.993494 B = 7112.179228 C = 7152.337878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.117 3.883 3 N -0.840 5.840 4 C -0.110 4.110 5 C 0.039 3.961 6 N -0.513 5.513 7 C 0.114 3.886 8 C -0.191 4.191 9 C -0.082 4.082 10 C -0.244 4.244 11 C 0.079 3.921 12 C -0.506 4.506 13 H 0.074 0.926 14 C 0.035 3.965 15 N -0.827 5.827 16 Si 0.982 3.018 17 H -0.262 1.262 18 H -0.266 1.266 19 H -0.258 1.258 20 C -0.191 4.191 21 C -0.088 4.088 22 C 0.042 3.958 23 H 0.062 0.938 24 H 0.064 0.936 25 H 0.068 0.932 26 H 0.347 0.653 27 H 0.346 0.654 28 H 0.086 0.914 29 H 0.068 0.932 30 H 0.044 0.956 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.039 0.961 34 H 0.111 0.889 35 H 0.095 0.905 36 H 0.287 0.713 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.076 0.924 40 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.206 7.700 -2.789 17.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.023 3.977 3 N -0.372 5.372 4 C -0.148 4.148 5 C -0.089 4.089 6 N -0.237 5.237 7 C -0.013 4.013 8 C -0.192 4.192 9 C -0.101 4.101 10 C -0.263 4.263 11 C 0.077 3.923 12 C -0.535 4.535 13 H 0.092 0.908 14 C -0.179 4.179 15 N -0.453 5.453 16 Si 0.803 3.197 17 H -0.186 1.186 18 H -0.191 1.191 19 H -0.183 1.183 20 C -0.210 4.210 21 C -0.107 4.107 22 C -0.086 4.086 23 H 0.081 0.919 24 H 0.083 0.917 25 H 0.087 0.913 26 H 0.161 0.839 27 H 0.160 0.840 28 H 0.104 0.896 29 H 0.087 0.913 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.057 0.943 34 H 0.128 0.872 35 H 0.113 0.887 36 H 0.098 0.902 37 H 0.116 0.884 38 H 0.117 0.883 39 H 0.095 0.905 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -13.901 7.726 -2.562 16.108 hybrid contribution -0.530 -0.587 0.039 0.792 sum -14.431 7.138 -2.523 16.296 Atomic orbital electron populations 1.22540 0.94654 1.02896 1.02674 1.21447 0.92425 0.89604 0.94211 1.58809 1.67834 1.02436 1.08119 1.22421 0.99244 0.96112 0.97041 1.23028 0.98109 0.96743 0.91022 1.65395 1.33114 1.23000 1.02213 1.20812 0.92886 0.91198 0.96436 1.19251 0.94262 1.02299 1.03411 1.20615 0.96026 0.96576 0.96836 1.21137 0.92979 1.04999 1.07222 1.17942 0.93211 0.90038 0.91095 1.19809 0.94834 1.36624 1.02243 0.90827 1.26757 1.05489 0.91662 0.94040 1.69886 1.35552 1.35971 1.03887 0.85264 0.75590 0.79967 0.78928 1.18642 1.19074 1.18268 1.21254 0.96431 0.99981 1.03372 1.20709 0.92674 0.98365 0.98968 1.23205 0.91006 0.97009 0.97401 0.91943 0.91721 0.91314 0.83911 0.84043 0.89580 0.91305 0.93764 0.92546 0.91159 0.94288 0.87151 0.88712 0.90212 0.88445 0.88308 0.90530 0.93054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.37 8.54 71.98 0.61 -1.75 16 2 C 0.12 2.32 1.24 4.42 0.01 2.33 16 3 N -0.84 -16.14 8.81 -148.04 -1.30 -17.45 16 4 C -0.11 -2.50 6.42 31.49 0.20 -2.30 16 5 C 0.04 1.15 5.71 86.42 0.49 1.65 16 6 N -0.51 -16.56 5.32 -885.62 -4.72 -21.28 16 7 C 0.11 3.99 4.97 85.56 0.43 4.41 16 8 C -0.19 -8.42 5.21 -19.67 -0.10 -8.53 16 9 C -0.08 -3.70 8.91 22.22 0.20 -3.50 16 10 C -0.24 -12.53 9.80 22.73 0.22 -12.31 16 11 C 0.08 4.52 5.57 -21.29 -0.12 4.40 16 12 C -0.51 -28.60 9.05 23.46 0.21 -28.39 16 13 H 0.07 4.01 7.91 -2.91 -0.02 3.99 16 14 C 0.04 1.84 5.14 85.25 0.44 2.28 16 15 N -0.83 -45.05 10.95 21.83 0.24 -44.81 16 16 Si 0.98 39.70 29.59 68.60 2.03 41.73 16 17 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 18 H -0.27 -10.12 7.11 99.48 0.71 -9.42 16 19 H -0.26 -10.04 7.11 99.48 0.71 -9.34 16 20 C -0.19 -10.65 8.70 22.73 0.20 -10.45 16 21 C -0.09 -4.36 9.67 22.22 0.21 -4.14 16 22 C 0.04 1.03 5.71 86.45 0.49 1.52 16 23 H 0.06 0.89 8.13 -2.39 -0.02 0.87 16 24 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.35 5.36 9.04 -89.69 -0.81 4.55 16 27 H 0.35 5.57 8.97 -89.69 -0.80 4.76 16 28 H 0.09 1.56 7.71 -2.38 -0.02 1.54 16 29 H 0.07 1.71 7.95 -2.38 -0.02 1.69 16 30 H 0.04 1.21 7.75 -2.39 -0.02 1.19 16 31 H 0.06 1.97 7.91 -2.38 -0.02 1.95 16 32 H 0.07 2.36 8.02 -2.39 -0.02 2.34 16 33 H 0.04 1.25 7.71 -2.39 -0.02 1.23 16 34 H 0.11 4.28 8.06 -2.91 -0.02 4.25 16 35 H 0.09 4.62 8.06 -2.91 -0.02 4.59 16 36 H 0.29 14.16 8.30 -92.71 -0.77 13.39 16 37 H 0.10 5.70 6.15 -2.91 -0.02 5.68 16 38 H 0.10 4.50 8.06 -2.91 -0.02 4.48 16 39 H 0.08 1.91 7.99 -2.39 -0.02 1.89 16 40 H 0.05 1.14 7.71 -2.39 -0.02 1.12 16 Total: -1.00 -63.11 322.35 -0.84 -63.95 By element: Atomic # 1 Polarization: 33.23 SS G_CDS: -0.58 Total: 32.65 kcal Atomic # 6 Polarization: -58.29 SS G_CDS: 3.50 Total: -54.79 kcal Atomic # 7 Polarization: -77.76 SS G_CDS: -5.78 Total: -83.54 kcal Atomic # 14 Polarization: 39.70 SS G_CDS: 2.03 Total: 41.73 kcal Total: -63.11 -0.84 -63.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405743692.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.786 kcal (2) G-P(sol) polarization free energy of solvation -63.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds