Wall clock time and date at job start Mon Mar 30 2020 04:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46899 * 110.28944 * 2 1 4 4 C 1.54270 * 110.32162 * 122.12170 * 2 1 3 5 5 C 1.54381 * 105.05797 * 118.89332 * 4 2 1 6 6 N 1.48557 * 104.59438 * 23.85622 * 5 4 2 7 7 C 1.46901 * 110.99866 * 200.95610 * 6 5 4 8 8 C 1.50699 * 109.47155 * 69.87201 * 7 6 5 9 9 C 1.38631 * 119.75311 * 269.73006 * 8 7 6 10 10 C 1.37616 * 120.25175 * 179.76647 * 9 8 7 11 11 C 1.40717 * 119.74000 * 0.47781 * 10 9 8 12 12 C 1.41398 * 120.24279 * 179.79281 * 11 10 9 13 13 H 1.08001 * 119.99939 * 24.36590 * 12 11 10 14 14 C 1.39942 * 119.99974 * 204.37103 * 12 11 10 15 15 N 1.30827 * 120.00241 * 17.85562 * 14 12 11 16 16 Si 1.86807 * 119.99976 * 197.85301 * 14 12 11 17 17 H 1.48506 * 109.46692 * 59.99918 * 16 14 12 18 18 H 1.48502 * 109.47103 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47297 * 299.99948 * 16 14 12 20 20 C 1.40718 * 119.51538 * 359.77211 * 11 10 9 21 21 C 1.37612 * 119.74258 * 359.97438 * 20 11 10 22 22 C 1.48552 * 104.22421 * 320.51468 * 6 5 4 23 23 H 1.09003 * 109.47568 * 299.33638 * 1 2 3 24 24 H 1.08993 * 109.47663 * 179.32884 * 1 2 3 25 25 H 1.08999 * 109.46958 * 59.32906 * 1 2 3 26 26 H 1.00897 * 111.00585 * 59.29534 * 3 2 1 27 27 H 1.00905 * 110.99678 * 183.25061 * 3 2 1 28 28 H 1.08995 * 110.32482 * 237.79133 * 4 2 1 29 29 H 1.09003 * 110.32165 * 0.02562 * 4 2 1 30 30 H 1.09000 * 110.40723 * 142.63054 * 5 4 2 31 31 H 1.08997 * 110.41152 * 264.95676 * 5 4 2 32 32 H 1.09004 * 109.47089 * 189.87561 * 7 6 5 33 33 H 1.08999 * 109.47119 * 309.87110 * 7 6 5 34 34 H 1.08009 * 119.87212 * 359.97438 * 9 8 7 35 35 H 1.07994 * 120.12955 * 180.22795 * 10 9 8 36 36 H 0.97000 * 119.99744 * 180.02562 * 15 14 12 37 37 H 1.08000 * 120.12895 * 180.02562 * 20 11 10 38 38 H 1.08002 * 119.87610 * 179.97438 * 21 20 11 39 39 H 1.09005 * 110.40989 * 280.70672 * 22 6 5 40 40 H 1.08997 * 110.41557 * 158.26486 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0394 1.3778 0.0000 4 6 2.0657 -0.7692 1.2252 5 6 2.8805 -1.9416 0.6379 6 7 3.2693 -1.4837 -0.7208 7 6 3.6068 -2.6234 -1.5840 8 6 2.3554 -3.4007 -1.9018 9 6 1.9652 -4.4439 -1.0763 10 6 0.8218 -5.1574 -1.3541 11 6 0.0532 -4.8311 -2.4868 12 6 -1.1211 -5.5601 -2.7848 13 1 -1.6507 -6.0761 -1.9976 14 6 -1.5971 -5.6130 -4.0997 15 7 -0.8061 -5.3036 -5.0947 16 14 -3.3621 -6.1255 -4.4342 17 1 -4.2881 -5.1839 -3.7550 18 1 -3.6161 -6.1001 -5.8971 19 1 -3.5853 -7.4993 -3.9163 20 6 0.4617 -3.7736 -3.3205 21 6 1.6059 -3.0704 -3.0203 22 6 2.0663 -0.7723 -1.2244 23 1 -0.3634 0.5035 0.8959 24 1 -0.3634 -1.0275 -0.0120 25 1 -0.3633 0.5242 -0.8839 26 1 1.7137 1.8839 0.8099 27 1 3.0469 1.3908 -0.0534 28 1 2.7081 -0.1250 1.8255 29 1 1.2386 -1.1471 1.8263 30 1 3.7669 -2.1296 1.2438 31 1 2.2652 -2.8393 0.5769 32 1 4.0529 -2.2589 -2.5093 33 1 4.3162 -3.2714 -1.0693 34 1 2.5592 -4.6954 -0.2099 35 1 0.5177 -5.9673 -0.7077 36 1 -1.1362 -5.3399 -6.0061 37 1 -0.1209 -3.5144 -4.1922 38 1 1.9216 -2.2587 -3.6590 39 1 1.3229 -1.4865 -1.5788 40 1 2.3395 -0.0800 -2.0207 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000405743695.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:46 Heat of formation + Delta-G solvation = 17.396808 kcal Electronic energy + Delta-G solvation = -19888.788186 eV Core-core repulsion = 17088.325080 eV Total energy + Delta-G solvation = -2800.463105 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.54934 -37.40645 -34.78296 -33.34755 -30.75918 -29.48871 -29.18689 -28.69298 -26.83876 -25.09583 -23.33298 -21.07048 -20.91607 -19.62726 -19.09655 -17.35453 -15.93586 -15.69039 -15.35247 -14.66480 -14.43585 -14.14151 -13.88120 -13.57197 -13.03581 -12.91179 -12.47189 -12.38194 -12.04217 -11.74968 -11.66589 -11.44221 -11.22702 -11.11192 -10.94859 -10.78201 -10.71079 -10.51888 -10.45609 -10.32194 -9.79054 -9.44207 -9.16152 -8.56167 -7.91995 -7.47715 -7.36702 -6.81296 -4.40813 2.70478 2.99116 3.03405 3.05342 3.15571 3.88604 4.47219 4.62184 4.66171 4.87222 5.01446 5.30823 5.52367 5.63128 5.71302 5.74037 5.90672 5.99588 6.03906 6.06626 6.13986 6.23675 6.25981 6.32519 6.35914 6.40396 6.51453 6.58473 6.89181 7.01143 7.14380 7.26643 7.34189 7.36236 7.48235 7.55103 7.61471 7.80083 7.99264 8.06271 8.24034 8.58163 8.83812 8.91484 10.12695 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.026588 B = 0.005486 C = 0.005117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.843563 B = 5102.345828 C = 5470.598105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.114 3.886 3 N -0.835 5.835 4 C -0.152 4.152 5 C 0.025 3.975 6 N -0.509 5.509 7 C 0.101 3.899 8 C -0.249 4.249 9 C -0.080 4.080 10 C -0.229 4.229 11 C 0.114 3.886 12 C -0.463 4.463 13 H 0.077 0.923 14 C 0.077 3.923 15 N -0.791 5.791 16 Si 0.907 3.093 17 H -0.263 1.263 18 H -0.278 1.278 19 H -0.265 1.265 20 C -0.166 4.166 21 C -0.087 4.087 22 C 0.032 3.968 23 H 0.049 0.951 24 H 0.064 0.936 25 H 0.062 0.938 26 H 0.332 0.668 27 H 0.344 0.656 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.282 0.718 37 H 0.117 0.883 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.993 7.372 7.180 10.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.021 3.979 3 N -0.364 5.364 4 C -0.192 4.192 5 C -0.103 4.103 6 N -0.231 5.231 7 C -0.026 4.026 8 C -0.251 4.251 9 C -0.099 4.099 10 C -0.249 4.249 11 C 0.111 3.889 12 C -0.492 4.492 13 H 0.095 0.905 14 C -0.141 4.141 15 N -0.416 5.416 16 Si 0.732 3.268 17 H -0.188 1.188 18 H -0.203 1.203 19 H -0.190 1.190 20 C -0.185 4.185 21 C -0.106 4.106 22 C -0.096 4.096 23 H 0.068 0.932 24 H 0.083 0.917 25 H 0.081 0.919 26 H 0.145 0.855 27 H 0.158 0.842 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.102 0.898 35 H 0.108 0.892 36 H 0.093 0.907 37 H 0.135 0.865 38 H 0.104 0.896 39 H 0.101 0.899 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.100 7.812 6.223 10.458 hybrid contribution -0.946 -1.231 0.624 1.673 sum 2.154 6.582 6.847 9.738 Atomic orbital electron populations 1.21802 0.93585 1.02245 1.01696 1.21531 0.94662 0.87623 0.94134 1.58895 1.15786 1.14013 1.47738 1.23182 0.99451 0.98300 0.98265 1.23108 0.98496 0.97459 0.91277 1.65842 1.32745 1.22481 1.02049 1.20933 0.95024 0.90328 0.96319 1.19548 1.01489 1.03377 1.00708 1.20365 0.96602 0.95635 0.97271 1.20948 0.98052 1.03238 1.02649 1.17617 0.91163 0.89906 0.90207 1.19579 1.07920 1.28027 0.93678 0.90524 1.25914 0.99103 0.93203 0.95918 1.69817 1.35811 1.35500 1.00439 0.86380 0.82503 0.80073 0.77867 1.18785 1.20267 1.18985 1.21314 0.98076 0.96942 1.02175 1.20533 0.96037 0.98466 0.95541 1.23414 0.93120 0.97080 0.96015 0.93227 0.91707 0.91864 0.85538 0.84247 0.92059 0.91510 0.91445 0.92068 0.91460 0.91974 0.89787 0.89210 0.90736 0.86488 0.89569 0.89905 0.90455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 8.53 37.16 0.32 -1.58 16 2 C 0.11 1.60 1.26 -130.22 -0.16 1.44 16 3 N -0.84 -10.26 8.83 1.86 0.02 -10.25 16 4 C -0.15 -2.03 6.42 -25.34 -0.16 -2.19 16 5 C 0.02 0.38 6.32 -2.18 -0.01 0.37 16 6 N -0.51 -8.30 5.65 -231.42 -1.31 -9.60 16 7 C 0.10 1.80 5.75 -4.98 -0.03 1.77 16 8 C -0.25 -5.19 3.86 -104.33 -0.40 -5.59 16 9 C -0.08 -1.73 8.00 -39.66 -0.32 -2.05 16 10 C -0.23 -5.53 9.80 -38.87 -0.38 -5.91 16 11 C 0.11 2.97 5.58 -106.82 -0.60 2.38 16 12 C -0.46 -12.12 9.05 -37.74 -0.34 -12.47 16 13 H 0.08 1.93 7.91 -52.49 -0.42 1.52 16 14 C 0.08 1.91 5.14 -17.34 -0.09 1.82 16 15 N -0.79 -20.24 10.95 55.55 0.61 -19.63 16 16 Si 0.91 18.45 29.60 -169.99 -5.03 13.42 16 17 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 18 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 19 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 20 C -0.17 -4.20 8.70 -38.87 -0.34 -4.54 16 21 C -0.09 -1.96 7.45 -39.66 -0.30 -2.25 16 22 C 0.03 0.53 5.18 -2.19 -0.01 0.52 16 23 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 24 H 0.06 1.00 8.12 -51.93 -0.42 0.58 16 25 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 26 H 0.33 3.45 9.04 -39.29 -0.36 3.10 16 27 H 0.34 4.14 8.99 -39.29 -0.35 3.78 16 28 H 0.06 0.73 7.95 -51.93 -0.41 0.32 16 29 H 0.07 0.87 7.71 -51.93 -0.40 0.47 16 30 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.06 1.05 5.25 -51.93 -0.27 0.78 16 32 H 0.07 1.18 8.08 -51.93 -0.42 0.76 16 33 H 0.06 1.05 8.02 -51.93 -0.42 0.63 16 34 H 0.08 1.64 7.52 -52.48 -0.39 1.24 16 35 H 0.09 2.06 8.06 -52.49 -0.42 1.64 16 36 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 37 H 0.12 3.09 6.16 -52.49 -0.32 2.77 16 38 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 39 H 0.08 1.61 4.47 -51.93 -0.23 1.38 16 40 H 0.08 1.32 8.06 -51.93 -0.42 0.90 16 LS Contribution 313.48 15.07 4.72 4.72 Total: -1.00 -25.99 313.48 -9.90 -35.88 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: -6.08 Total: 13.74 kcal Atomic # 6 Polarization: -25.47 SS G_CDS: -2.82 Total: -28.29 kcal Atomic # 7 Polarization: -38.80 SS G_CDS: -0.68 Total: -39.48 kcal Atomic # 14 Polarization: 18.45 SS G_CDS: -5.03 Total: 13.42 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -25.99 -9.90 -35.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405743695.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.279 kcal (2) G-P(sol) polarization free energy of solvation -25.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds