Wall clock time and date at job start Mon Mar 30 2020 04:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46899 * 110.28944 * 2 1 4 4 C 1.54270 * 110.32162 * 122.12170 * 2 1 3 5 5 C 1.54381 * 105.05797 * 118.89332 * 4 2 1 6 6 N 1.48557 * 104.59438 * 23.85622 * 5 4 2 7 7 C 1.46901 * 110.99866 * 200.95610 * 6 5 4 8 8 C 1.50699 * 109.47155 * 69.87201 * 7 6 5 9 9 C 1.38631 * 119.75311 * 269.73006 * 8 7 6 10 10 C 1.37616 * 120.25175 * 179.76647 * 9 8 7 11 11 C 1.40717 * 119.74000 * 0.47781 * 10 9 8 12 12 C 1.41398 * 120.24279 * 179.79281 * 11 10 9 13 13 H 1.08001 * 119.99939 * 24.36590 * 12 11 10 14 14 C 1.39942 * 119.99974 * 204.37103 * 12 11 10 15 15 N 1.30827 * 120.00241 * 17.85562 * 14 12 11 16 16 Si 1.86807 * 119.99976 * 197.85301 * 14 12 11 17 17 H 1.48506 * 109.46692 * 59.99918 * 16 14 12 18 18 H 1.48502 * 109.47103 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47297 * 299.99948 * 16 14 12 20 20 C 1.40718 * 119.51538 * 359.77211 * 11 10 9 21 21 C 1.37612 * 119.74258 * 359.97438 * 20 11 10 22 22 C 1.48552 * 104.22421 * 320.51468 * 6 5 4 23 23 H 1.09003 * 109.47568 * 299.33638 * 1 2 3 24 24 H 1.08993 * 109.47663 * 179.32884 * 1 2 3 25 25 H 1.08999 * 109.46958 * 59.32906 * 1 2 3 26 26 H 1.00897 * 111.00585 * 59.29534 * 3 2 1 27 27 H 1.00905 * 110.99678 * 183.25061 * 3 2 1 28 28 H 1.08995 * 110.32482 * 237.79133 * 4 2 1 29 29 H 1.09003 * 110.32165 * 0.02562 * 4 2 1 30 30 H 1.09000 * 110.40723 * 142.63054 * 5 4 2 31 31 H 1.08997 * 110.41152 * 264.95676 * 5 4 2 32 32 H 1.09004 * 109.47089 * 189.87561 * 7 6 5 33 33 H 1.08999 * 109.47119 * 309.87110 * 7 6 5 34 34 H 1.08009 * 119.87212 * 359.97438 * 9 8 7 35 35 H 1.07994 * 120.12955 * 180.22795 * 10 9 8 36 36 H 0.97000 * 119.99744 * 180.02562 * 15 14 12 37 37 H 1.08000 * 120.12895 * 180.02562 * 20 11 10 38 38 H 1.08002 * 119.87610 * 179.97438 * 21 20 11 39 39 H 1.09005 * 110.40989 * 280.70672 * 22 6 5 40 40 H 1.08997 * 110.41557 * 158.26486 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0394 1.3778 0.0000 4 6 2.0657 -0.7692 1.2252 5 6 2.8805 -1.9416 0.6379 6 7 3.2693 -1.4837 -0.7208 7 6 3.6068 -2.6234 -1.5840 8 6 2.3554 -3.4007 -1.9018 9 6 1.9652 -4.4439 -1.0763 10 6 0.8218 -5.1574 -1.3541 11 6 0.0532 -4.8311 -2.4868 12 6 -1.1211 -5.5601 -2.7848 13 1 -1.6507 -6.0761 -1.9976 14 6 -1.5971 -5.6130 -4.0997 15 7 -0.8061 -5.3036 -5.0947 16 14 -3.3621 -6.1255 -4.4342 17 1 -4.2881 -5.1839 -3.7550 18 1 -3.6161 -6.1001 -5.8971 19 1 -3.5853 -7.4993 -3.9163 20 6 0.4617 -3.7736 -3.3205 21 6 1.6059 -3.0704 -3.0203 22 6 2.0663 -0.7723 -1.2244 23 1 -0.3634 0.5035 0.8959 24 1 -0.3634 -1.0275 -0.0120 25 1 -0.3633 0.5242 -0.8839 26 1 1.7137 1.8839 0.8099 27 1 3.0469 1.3908 -0.0534 28 1 2.7081 -0.1250 1.8255 29 1 1.2386 -1.1471 1.8263 30 1 3.7669 -2.1296 1.2438 31 1 2.2652 -2.8393 0.5769 32 1 4.0529 -2.2589 -2.5093 33 1 4.3162 -3.2714 -1.0693 34 1 2.5592 -4.6954 -0.2099 35 1 0.5177 -5.9673 -0.7077 36 1 -1.1362 -5.3399 -6.0061 37 1 -0.1209 -3.5144 -4.1922 38 1 1.9216 -2.2587 -3.6590 39 1 1.3229 -1.4865 -1.5788 40 1 2.3395 -0.0800 -2.0207 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000405743695.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:46 Heat of formation + Delta-G solvation = 0.767231 kcal Electronic energy + Delta-G solvation = -19889.509298 eV Core-core repulsion = 17088.325080 eV Total energy + Delta-G solvation = -2801.184218 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.92806 -39.06305 -36.29719 -34.99350 -32.29398 -31.27308 -30.58497 -29.91224 -28.37520 -26.65599 -24.79114 -22.88474 -22.43002 -21.21394 -20.28807 -19.24648 -17.26705 -17.08365 -16.90608 -16.07979 -15.81701 -15.60175 -15.56553 -15.15895 -14.50290 -14.13474 -13.93743 -13.84029 -13.83037 -13.38639 -13.00850 -12.84334 -12.72287 -12.57652 -12.50222 -12.30075 -12.27235 -11.99364 -11.67665 -11.63961 -11.54680 -11.27222 -11.00730 -9.59216 -9.35991 -9.29229 -9.21178 -8.66005 -6.36125 0.92224 1.10923 1.35661 1.46646 1.50933 2.18172 2.67844 3.27077 3.56826 3.66697 3.74527 3.88532 4.17010 4.25538 4.36744 4.40849 4.52062 4.54498 4.60608 4.79698 4.80211 4.88296 4.95469 4.99722 5.04282 5.10145 5.12750 5.15106 5.18774 5.31001 5.36150 5.44115 5.66589 5.91147 5.92421 6.07451 6.12037 6.24859 6.34565 6.36461 6.67769 6.72550 6.91787 7.01008 8.30119 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.026588 B = 0.005486 C = 0.005117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.843563 B = 5102.345828 C = 5470.598105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.119 3.881 3 N -0.834 5.834 4 C -0.145 4.145 5 C 0.021 3.979 6 N -0.499 5.499 7 C 0.104 3.896 8 C -0.231 4.231 9 C -0.077 4.077 10 C -0.245 4.245 11 C 0.082 3.918 12 C -0.502 4.502 13 H 0.073 0.927 14 C 0.037 3.963 15 N -0.825 5.825 16 Si 0.980 3.020 17 H -0.261 1.261 18 H -0.267 1.267 19 H -0.259 1.259 20 C -0.189 4.189 21 C -0.086 4.086 22 C 0.032 3.968 23 H 0.072 0.928 24 H 0.042 0.958 25 H 0.054 0.946 26 H 0.347 0.653 27 H 0.349 0.651 28 H 0.083 0.917 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.040 0.960 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.112 0.888 35 H 0.093 0.907 36 H 0.288 0.712 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.051 0.949 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.780 8.426 8.588 12.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.025 3.975 3 N -0.365 5.365 4 C -0.185 4.185 5 C -0.107 4.107 6 N -0.221 5.221 7 C -0.024 4.024 8 C -0.233 4.233 9 C -0.096 4.096 10 C -0.265 4.265 11 C 0.080 3.920 12 C -0.532 4.532 13 H 0.092 0.908 14 C -0.178 4.178 15 N -0.450 5.450 16 Si 0.800 3.200 17 H -0.186 1.186 18 H -0.191 1.191 19 H -0.183 1.183 20 C -0.209 4.209 21 C -0.105 4.105 22 C -0.096 4.096 23 H 0.091 0.909 24 H 0.062 0.938 25 H 0.073 0.927 26 H 0.161 0.839 27 H 0.163 0.837 28 H 0.102 0.898 29 H 0.089 0.911 30 H 0.105 0.895 31 H 0.059 0.941 32 H 0.090 0.910 33 H 0.097 0.903 34 H 0.130 0.870 35 H 0.111 0.889 36 H 0.099 0.901 37 H 0.115 0.885 38 H 0.116 0.884 39 H 0.069 0.931 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.904 8.880 7.649 12.354 hybrid contribution -1.051 -1.466 0.256 1.821 sum 2.854 7.414 7.905 11.208 Atomic orbital electron populations 1.21762 0.93843 1.01035 1.02460 1.21385 0.94422 0.88469 0.93208 1.58789 1.16152 1.12835 1.48769 1.23162 0.99655 0.97730 0.97969 1.23200 0.99287 0.97374 0.90853 1.65848 1.32418 1.21461 1.02330 1.20969 0.93491 0.90644 0.97249 1.19920 1.01895 1.02442 0.99061 1.20645 0.95861 0.95099 0.97991 1.21138 0.98954 1.03991 1.02423 1.17940 0.92063 0.90600 0.91383 1.19818 1.09088 1.29644 0.94625 0.90842 1.26740 1.03149 0.92810 0.95139 1.69873 1.37688 1.36514 1.00966 0.85289 0.76802 0.79735 0.78126 1.18551 1.19095 1.18313 1.21242 0.99391 0.98053 1.02172 1.20695 0.95286 0.98210 0.96277 1.23324 0.92426 0.96667 0.97217 0.90903 0.93849 0.92720 0.83895 0.83742 0.89839 0.91133 0.89513 0.94124 0.90981 0.90324 0.87011 0.88907 0.90122 0.88478 0.88405 0.93052 0.91057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.58 8.53 71.98 0.61 -2.97 16 2 C 0.12 3.10 1.26 4.42 0.01 3.10 16 3 N -0.83 -18.19 8.83 -148.04 -1.31 -19.50 16 4 C -0.15 -3.44 6.42 31.49 0.20 -3.24 16 5 C 0.02 0.58 6.32 86.45 0.55 1.13 16 6 N -0.50 -15.06 5.65 -886.07 -5.01 -20.07 16 7 C 0.10 3.47 5.75 85.56 0.49 3.96 16 8 C -0.23 -9.46 3.86 -19.67 -0.08 -9.54 16 9 C -0.08 -3.30 8.00 22.22 0.18 -3.12 16 10 C -0.25 -12.08 9.80 22.73 0.22 -11.86 16 11 C 0.08 4.50 5.58 -21.29 -0.12 4.38 16 12 C -0.50 -27.47 9.05 23.46 0.21 -27.26 16 13 H 0.07 3.88 7.91 -2.91 -0.02 3.86 16 14 C 0.04 1.87 5.14 85.26 0.44 2.31 16 15 N -0.82 -43.73 10.95 21.83 0.24 -43.49 16 16 Si 0.98 38.58 29.60 68.60 2.03 40.61 16 17 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 18 H -0.27 -9.90 7.11 99.48 0.71 -9.20 16 19 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 20 C -0.19 -10.01 8.70 22.73 0.20 -9.81 16 21 C -0.09 -3.93 7.45 22.22 0.17 -3.77 16 22 C 0.03 1.03 5.18 86.45 0.45 1.48 16 23 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 24 H 0.04 1.34 8.12 -2.39 -0.02 1.32 16 25 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.35 6.03 9.04 -89.70 -0.81 5.22 16 27 H 0.35 7.28 8.99 -89.69 -0.81 6.48 16 28 H 0.08 1.64 7.95 -2.39 -0.02 1.62 16 29 H 0.07 1.64 7.71 -2.39 -0.02 1.63 16 30 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.04 1.31 5.25 -2.39 -0.01 1.29 16 32 H 0.07 2.36 8.08 -2.38 -0.02 2.34 16 33 H 0.08 2.40 8.02 -2.39 -0.02 2.38 16 34 H 0.11 4.12 7.52 -2.91 -0.02 4.10 16 35 H 0.09 4.37 8.06 -2.91 -0.02 4.35 16 36 H 0.29 13.85 8.30 -92.71 -0.77 13.08 16 37 H 0.10 5.44 6.16 -2.91 -0.02 5.43 16 38 H 0.10 4.16 8.06 -2.91 -0.02 4.14 16 39 H 0.05 2.00 4.47 -2.38 -0.01 1.99 16 40 H 0.07 2.36 8.06 -2.39 -0.02 2.34 16 Total: -1.00 -57.54 313.48 -1.09 -58.63 By element: Atomic # 1 Polarization: 39.59 SS G_CDS: -0.57 Total: 39.02 kcal Atomic # 6 Polarization: -58.73 SS G_CDS: 3.53 Total: -55.20 kcal Atomic # 7 Polarization: -76.98 SS G_CDS: -6.07 Total: -83.06 kcal Atomic # 14 Polarization: 38.58 SS G_CDS: 2.03 Total: 40.61 kcal Total: -57.54 -1.09 -58.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405743695.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.395 kcal (2) G-P(sol) polarization free energy of solvation -57.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds