Wall clock time and date at job start Mon Mar 30 2020 05:02:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.37103 * 119.99801 * 2 1 4 4 H 1.07999 * 119.99725 * 205.15212 * 3 2 1 5 5 C 1.38953 * 119.99737 * 25.14579 * 3 2 1 6 6 N 1.31409 * 120.00156 * 11.74722 * 5 3 2 7 7 Si 1.86798 * 119.99546 * 191.74287 * 5 3 2 8 8 H 1.48504 * 109.46797 * 90.00503 * 7 5 3 9 9 H 1.48503 * 109.47188 * 209.99911 * 7 5 3 10 10 H 1.48498 * 109.47318 * 330.00503 * 7 5 3 11 11 C 1.34773 * 120.00008 * 179.97438 * 2 1 3 12 12 O 1.21301 * 119.99535 * 180.02562 * 11 2 1 13 13 C 1.50694 * 120.00462 * 359.97438 * 11 2 1 14 14 H 1.09008 * 115.54587 * 34.33288 * 13 11 2 15 15 C 1.52997 * 117.50254 * 248.62827 * 13 11 2 16 16 C 1.53003 * 117.50340 * 180.02562 * 13 11 2 17 17 C 1.53000 * 117.49575 * 359.97438 * 16 13 11 18 18 Br 1.96599 * 117.49840 * 214.98412 * 16 13 11 19 19 H 1.08994 * 109.46888 * 265.05757 * 1 2 3 20 20 H 1.08996 * 109.46693 * 145.05957 * 1 2 3 21 21 H 1.08996 * 109.47021 * 25.05738 * 1 2 3 22 22 H 0.97003 * 119.99633 * 179.97438 * 6 5 3 23 23 H 1.08997 * 117.49981 * 359.97438 * 15 13 11 24 24 H 1.08998 * 117.50338 * 145.02409 * 15 13 11 25 25 H 1.09003 * 109.46912 * 60.00525 * 17 16 13 26 26 H 1.08993 * 109.47028 * 179.97438 * 17 16 13 27 27 H 1.09000 * 109.47512 * 300.00481 * 17 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1874 0.0000 4 1 3.1537 1.2317 -0.3975 5 6 1.5544 2.3337 0.5114 6 7 0.4387 2.2429 1.1996 7 14 2.3393 4.0036 0.2205 8 1 1.8076 4.5881 -1.0369 9 1 2.0224 4.9044 1.3578 10 1 3.8117 3.8459 0.1092 11 6 2.1389 -1.1672 0.0005 12 8 3.3519 -1.1671 0.0010 13 6 1.3856 -2.4723 0.0017 14 1 0.4469 -2.4737 -0.5526 15 6 1.4611 -3.3306 1.2660 16 6 2.2077 -3.7627 0.0028 17 6 3.7318 -3.6292 0.0021 18 35 1.4904 -5.2968 -0.9956 19 1 -0.3633 -0.0885 1.0238 20 1 -0.3632 -0.8424 -0.5886 21 1 -0.3633 0.9309 -0.4352 22 1 0.0228 3.0432 1.5569 23 1 2.0561 -2.9514 2.0968 24 1 0.5722 -3.8969 1.5438 25 1 4.0493 -3.0847 0.8914 26 1 4.1834 -4.6212 0.0035 27 1 4.0487 -3.0865 -0.8885 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000528320388.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:57 Heat of formation + Delta-G solvation = -16.374881 kcal Electronic energy + Delta-G solvation = -12831.207459 eV Core-core repulsion = 10443.034517 eV Total energy + Delta-G solvation = -2388.172942 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 261.011 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.87254 -37.98151 -36.38440 -33.64614 -31.11368 -29.57659 -28.35963 -26.74652 -24.48115 -21.66750 -19.81481 -18.89502 -18.21985 -16.69112 -16.14820 -15.94055 -15.38911 -14.78064 -14.31267 -13.82866 -13.54918 -13.49712 -13.12015 -13.06298 -12.65540 -12.62287 -12.38593 -12.13270 -11.74875 -11.44558 -11.00748 -10.88441 -10.59685 -10.11591 -9.64685 -8.34435 -5.99908 0.47050 1.36355 1.41618 1.53389 1.82497 2.25733 2.57716 3.00951 3.12772 3.47302 3.76538 3.83523 4.11559 4.50685 4.64628 4.75601 4.83437 4.88310 4.91851 5.05968 5.35883 5.38922 5.44984 6.10525 6.48157 7.16233 7.46081 8.03233 8.68630 Molecular weight = 261.01amu Principal moments of inertia in cm(-1) A = 0.056850 B = 0.005674 C = 0.005422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.407440 B = 4933.543271 C = 5162.912009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.121 3.879 2 N -0.457 5.457 3 C -0.343 4.343 4 H 0.072 0.928 5 C -0.001 4.001 6 N -0.896 5.896 7 Si 0.989 3.011 8 H -0.266 1.266 9 H -0.274 1.274 10 H -0.276 1.276 11 C 0.465 3.535 12 O -0.615 6.615 13 C -0.159 4.159 14 H 0.139 0.861 15 C -0.110 4.110 16 C -0.065 4.065 17 C -0.085 4.085 18 Br -0.106 7.106 19 H 0.044 0.956 20 H 0.063 0.937 21 H 0.057 0.943 22 H 0.274 0.726 23 H 0.102 0.898 24 H 0.140 0.860 25 H 0.061 0.939 26 H 0.074 0.926 27 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.745 -12.610 -1.867 13.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.022 4.022 2 N -0.175 5.175 3 C -0.471 4.471 4 H 0.090 0.910 5 C -0.203 4.203 6 N -0.534 5.534 7 Si 0.812 3.188 8 H -0.191 1.191 9 H -0.199 1.199 10 H -0.201 1.201 11 C 0.254 3.746 12 O -0.502 6.502 13 C -0.182 4.182 14 H 0.156 0.844 15 C -0.149 4.149 16 C -0.143 4.143 17 C -0.143 4.143 18 Br -0.024 7.024 19 H 0.063 0.937 20 H 0.082 0.918 21 H 0.076 0.924 22 H 0.083 0.917 23 H 0.120 0.880 24 H 0.158 0.842 25 H 0.080 0.920 26 H 0.093 0.907 27 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.571 -12.980 -2.124 13.402 hybrid contribution 0.352 1.389 0.093 1.436 sum -2.219 -11.591 -2.032 11.975 Atomic orbital electron populations 1.21443 0.79551 1.00614 1.00552 1.43749 1.06684 1.04470 1.62616 1.19608 1.00899 0.86120 1.40438 0.90997 1.26078 0.97016 1.02912 0.94254 1.70054 1.19635 1.30876 1.32835 0.85003 0.78326 0.77118 0.78323 1.19119 1.19882 1.20053 1.19862 0.87411 0.84933 0.82375 1.90494 1.15228 1.87459 1.57022 1.22525 1.01230 0.88991 1.05437 0.84374 1.23479 1.02651 0.98729 0.90037 1.24796 0.96814 0.90682 1.01981 1.21287 0.88875 1.00989 1.03099 1.97276 1.86658 1.42152 1.76309 0.93714 0.91833 0.92435 0.91679 0.87955 0.84241 0.92048 0.90741 0.92971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.31 8.45 127.77 1.08 6.39 15 2 N -0.46 -23.43 3.01 -658.89 -1.98 -25.41 15 3 C -0.34 -19.33 9.23 84.04 0.78 -18.55 15 4 H 0.07 4.33 7.46 -2.91 -0.02 4.30 15 5 C 0.00 -0.03 5.06 84.93 0.43 0.40 15 6 N -0.90 -47.11 10.83 21.66 0.23 -46.87 15 7 Si 0.99 42.18 29.57 68.60 2.03 44.21 15 8 H -0.27 -10.82 7.11 99.48 0.71 -10.11 15 9 H -0.27 -11.19 7.11 99.48 0.71 -10.48 15 10 H -0.28 -11.97 7.11 99.48 0.71 -11.26 15 11 C 0.47 22.29 7.39 87.66 0.65 22.94 15 12 O -0.61 -33.13 12.83 -3.09 -0.04 -33.17 15 13 C -0.16 -5.66 5.12 -11.54 -0.06 -5.72 15 14 H 0.14 4.37 6.51 -2.38 -0.02 4.36 15 15 C -0.11 -3.21 9.70 30.58 0.30 -2.91 15 16 C -0.07 -2.03 3.11 -10.81 -0.03 -2.06 15 17 C -0.08 -2.84 8.16 71.98 0.59 -2.25 15 18 Br -0.11 -2.74 33.93 -20.37 -0.69 -3.43 15 19 H 0.04 1.99 7.85 -2.39 -0.02 1.97 15 20 H 0.06 2.24 6.22 -2.39 -0.01 2.23 15 21 H 0.06 2.68 6.78 -2.39 -0.02 2.67 15 22 H 0.27 13.47 8.31 -92.71 -0.77 12.70 15 23 H 0.10 3.18 8.05 -2.39 -0.02 3.16 15 24 H 0.14 3.14 8.14 -2.39 -0.02 3.12 15 25 H 0.06 2.28 7.01 -2.39 -0.02 2.27 15 26 H 0.07 2.06 8.13 -2.39 -0.02 2.04 15 27 H 0.05 2.00 7.26 -2.39 -0.02 1.98 15 Total: -1.00 -61.93 249.41 4.44 -57.48 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: 1.17 Total: 8.95 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: 3.72 Total: -1.77 kcal Atomic # 7 Polarization: -70.53 SS G_CDS: -1.75 Total: -72.28 kcal Atomic # 8 Polarization: -33.13 SS G_CDS: -0.04 Total: -33.17 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal Atomic # 35 Polarization: -2.74 SS G_CDS: -0.69 Total: -3.43 kcal Total: -61.93 4.44 -57.48 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528320388.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.108 kcal (2) G-P(sol) polarization free energy of solvation -61.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds