Wall clock time and date at job start Mon Mar 30 2020 04:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46891 * 1 3 3 C 1.47961 * 111.00168 * 2 1 4 4 C 1.53937 * 86.18355 * 137.58494 * 3 2 1 5 5 C 1.47967 * 111.00193 * 99.35992 * 2 1 3 6 6 H 1.08994 * 113.85672 * 336.74425 * 5 2 1 7 7 C 1.52995 * 113.75681 * 108.09874 * 5 2 1 8 8 N 1.46900 * 109.47467 * 281.55872 * 7 5 2 9 9 C 1.46895 * 111.00492 * 180.02562 * 8 7 5 10 10 C 1.50702 * 109.47125 * 180.02562 * 9 8 7 11 11 C 1.38641 * 119.74829 * 269.72810 * 10 9 8 12 12 C 1.37619 * 120.24342 * 179.72251 * 11 10 9 13 13 C 1.40709 * 119.74690 * 0.57208 * 12 11 10 14 14 C 1.41400 * 120.24510 * 179.68125 * 13 12 11 15 15 H 1.07998 * 119.99951 * 204.40893 * 14 13 12 16 16 C 1.39944 * 119.99719 * 24.40723 * 14 13 12 17 17 N 1.30819 * 120.00304 * 17.84498 * 16 14 13 18 18 Si 1.86803 * 119.99764 * 197.84770 * 16 14 13 19 19 H 1.48501 * 109.47048 * 60.00051 * 18 16 14 20 20 H 1.48498 * 109.46907 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.46922 * 299.99706 * 18 16 14 22 22 C 1.40712 * 119.51208 * 359.70256 * 13 12 11 23 23 C 1.37618 * 119.74506 * 0.02562 * 22 13 12 24 24 H 1.09004 * 109.47399 * 320.64127 * 1 2 3 25 25 H 1.09002 * 109.47342 * 80.64130 * 1 2 3 26 26 H 1.08998 * 109.47336 * 200.64415 * 1 2 3 27 27 H 1.08997 * 113.75994 * 23.26644 * 3 2 1 28 28 H 1.09001 * 113.85921 * 251.91252 * 3 2 1 29 29 H 1.09001 * 113.73397 * 221.92301 * 4 3 2 30 30 H 1.08995 * 113.83491 * 90.64928 * 4 3 2 31 31 H 1.09010 * 109.46903 * 161.56383 * 7 5 2 32 32 H 1.08998 * 109.47693 * 41.56175 * 7 5 2 33 33 H 1.00907 * 110.99754 * 56.04470 * 8 7 5 34 34 H 1.09001 * 109.47233 * 300.00437 * 9 8 7 35 35 H 1.09002 * 109.46952 * 60.00705 * 9 8 7 36 36 H 1.08000 * 119.87324 * 359.97438 * 11 10 9 37 37 H 1.08005 * 120.12390 * 180.27427 * 12 11 10 38 38 H 0.96995 * 120.00332 * 180.02562 * 17 16 14 39 39 H 1.08003 * 120.12749 * 180.02562 * 22 13 12 40 40 H 1.08001 * 119.87232 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9992 1.3813 0.0000 4 6 3.0211 0.8793 1.0360 5 6 1.9992 -0.2247 1.3630 6 1 1.3022 0.0434 2.1569 7 6 2.6262 -1.6062 1.5604 8 7 1.5643 -2.6038 1.7476 9 6 2.1303 -3.9454 1.9412 10 6 1.0134 -4.9396 2.1289 11 6 0.5416 -5.2116 3.4038 12 6 -0.4818 -6.1134 3.5864 13 6 -1.0412 -6.7692 2.4742 14 6 -2.0885 -7.7027 2.6503 15 1 -2.2532 -8.4749 1.9135 16 6 -2.9117 -7.6260 3.7795 17 7 -2.9566 -6.5237 4.4826 18 14 -3.9462 -9.0977 4.2828 19 1 -3.0581 -10.2541 4.5641 20 1 -4.7240 -8.7621 5.5025 21 1 -4.8794 -9.4465 3.1816 22 6 -0.5504 -6.4894 1.1855 23 6 0.4698 -5.5798 1.0260 24 1 -0.3634 0.7946 0.6517 25 1 -0.3634 0.1671 -1.0140 26 1 -0.3634 -0.9616 0.3623 27 1 1.3010 2.1198 0.3941 28 1 2.4461 1.6820 -0.9476 29 1 3.1921 1.5758 1.8568 30 1 3.9458 0.5049 0.5969 31 1 3.2695 -1.5909 2.4404 32 1 3.2178 -1.8657 0.6825 33 1 0.9169 -2.5923 0.9737 34 1 2.7187 -4.2213 1.0661 35 1 2.7698 -3.9460 2.8240 36 1 0.9761 -4.7109 4.2564 37 1 -0.8509 -6.3206 4.5801 38 1 -3.5268 -6.4707 5.2654 39 1 -0.9728 -6.9867 0.3248 40 1 0.8484 -5.3638 0.0378 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712546882.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:31 Heat of formation + Delta-G solvation = 45.616456 kcal Electronic energy + Delta-G solvation = -18705.462622 eV Core-core repulsion = 15906.223212 eV Total energy + Delta-G solvation = -2799.239410 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.01605 -37.69989 -35.35100 -33.50669 -30.90601 -30.26435 -29.21925 -27.93994 -25.66150 -24.14719 -23.23150 -22.18325 -20.90278 -19.94292 -19.45732 -17.25544 -16.39196 -15.69603 -15.30094 -15.07346 -14.74848 -14.11958 -13.98462 -13.66162 -13.33711 -13.17931 -12.63892 -12.50959 -12.21276 -11.88727 -11.65460 -11.59360 -11.41572 -11.28439 -11.01326 -10.93196 -10.78998 -10.67711 -10.35531 -10.33591 -9.55301 -9.32578 -9.09092 -8.88667 -7.96989 -7.39631 -7.25849 -6.72396 -4.31460 2.79212 3.07886 3.10596 3.12466 3.22119 3.80741 3.95270 4.32983 4.51000 4.68813 4.94656 5.12859 5.22435 5.29779 5.37229 5.42723 5.51748 5.59701 5.73531 5.78267 5.86963 5.92744 5.95216 6.04474 6.11537 6.31490 6.34889 6.41669 6.49518 6.97480 7.00275 7.10718 7.34334 7.40751 7.49953 7.65947 7.80868 7.95502 8.09555 8.20238 8.34515 8.68694 8.93399 9.02349 10.21881 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.035381 B = 0.003619 C = 0.003530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.195687 B = 7735.870598 C = 7930.154938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.011 4.011 2 N -0.484 5.484 3 C -0.001 4.001 4 C -0.143 4.143 5 C 0.035 3.965 6 H 0.086 0.914 7 C 0.076 3.924 8 N -0.684 5.684 9 C 0.125 3.875 10 C -0.213 4.213 11 C -0.080 4.080 12 C -0.168 4.168 13 C 0.112 3.888 14 C -0.465 4.465 15 H 0.076 0.924 16 C 0.076 3.924 17 N -0.792 5.792 18 Si 0.907 3.093 19 H -0.264 1.264 20 H -0.279 1.279 21 H -0.266 1.266 22 C -0.228 4.228 23 C -0.085 4.085 24 H 0.033 0.967 25 H 0.066 0.934 26 H 0.076 0.924 27 H 0.067 0.933 28 H 0.085 0.915 29 H 0.071 0.929 30 H 0.089 0.911 31 H 0.072 0.928 32 H 0.032 0.968 33 H 0.341 0.659 34 H 0.018 0.982 35 H 0.061 0.939 36 H 0.087 0.913 37 H 0.117 0.883 38 H 0.280 0.720 39 H 0.090 0.910 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.454 11.541 -3.818 14.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 N -0.206 5.206 3 C -0.130 4.130 4 C -0.181 4.181 5 C -0.075 4.075 6 H 0.104 0.896 7 C -0.054 4.054 8 N -0.316 5.316 9 C -0.003 4.003 10 C -0.214 4.214 11 C -0.099 4.099 12 C -0.187 4.187 13 C 0.110 3.890 14 C -0.495 4.495 15 H 0.094 0.906 16 C -0.141 4.141 17 N -0.417 5.417 18 Si 0.732 3.268 19 H -0.189 1.189 20 H -0.204 1.204 21 H -0.191 1.191 22 C -0.247 4.247 23 C -0.104 4.104 24 H 0.051 0.949 25 H 0.085 0.915 26 H 0.095 0.905 27 H 0.085 0.915 28 H 0.104 0.896 29 H 0.089 0.911 30 H 0.108 0.892 31 H 0.090 0.910 32 H 0.050 0.950 33 H 0.159 0.841 34 H 0.036 0.964 35 H 0.079 0.921 36 H 0.105 0.895 37 H 0.135 0.865 38 H 0.091 0.909 39 H 0.108 0.892 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 7.414 11.317 -3.473 13.968 hybrid contribution -0.770 -0.215 -0.043 0.801 sum 6.644 11.102 -3.516 13.407 Atomic orbital electron populations 1.22882 0.89339 1.02221 1.01584 1.68473 1.09445 1.17887 1.24839 1.23861 0.97415 0.91617 1.00059 1.23380 0.98288 0.97658 0.98766 1.23557 0.96687 0.95710 0.91530 0.89605 1.21807 0.93763 0.90208 0.99625 1.60669 1.17015 1.05409 1.48497 1.20546 0.94727 0.86468 0.98546 1.18921 1.04071 1.04596 0.93831 1.20501 0.96884 0.97654 0.94819 1.21308 0.97356 1.00808 0.99236 1.17609 0.90506 0.90293 0.90596 1.19564 1.11823 1.12702 1.05367 0.90580 1.25900 0.96640 0.96199 0.95394 1.69825 1.32213 1.25050 1.14631 0.86393 0.79754 0.82151 0.78552 1.18853 1.20363 1.19059 1.20930 1.02912 1.04539 0.96347 1.20365 0.96941 0.97424 0.95681 0.94876 0.91484 0.90474 0.91454 0.89633 0.91050 0.89214 0.90991 0.94951 0.84079 0.96425 0.92086 0.89513 0.86546 0.90869 0.89203 0.89932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.13 9.65 60.06 0.58 0.45 16 2 N -0.48 -5.89 6.36 -238.94 -1.52 -7.41 16 3 C 0.00 -0.01 7.97 -2.77 -0.02 -0.03 16 4 C -0.14 -1.34 7.85 -25.79 -0.20 -1.54 16 5 C 0.03 0.41 3.50 -66.65 -0.23 0.18 16 6 H 0.09 1.09 7.93 -51.93 -0.41 0.68 16 7 C 0.08 1.03 5.72 -3.83 -0.02 1.01 16 8 N -0.68 -11.49 6.49 -115.06 -0.75 -12.24 16 9 C 0.12 2.27 5.80 -4.98 -0.03 2.25 16 10 C -0.21 -4.70 5.41 -104.33 -0.56 -5.27 16 11 C -0.08 -1.90 9.67 -39.66 -0.38 -2.29 16 12 C -0.17 -4.44 8.70 -38.87 -0.34 -4.77 16 13 C 0.11 3.05 5.57 -106.83 -0.60 2.45 16 14 C -0.46 -12.54 9.05 -37.74 -0.34 -12.88 16 15 H 0.08 1.97 7.91 -52.49 -0.41 1.55 16 16 C 0.08 1.95 5.14 -17.34 -0.09 1.86 16 17 N -0.79 -20.77 10.95 55.55 0.61 -20.16 16 18 Si 0.91 18.86 29.60 -169.99 -5.03 13.83 16 19 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 20 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 21 H -0.27 -5.46 7.11 56.52 0.40 -5.05 16 22 C -0.23 -5.70 9.80 -38.87 -0.38 -6.08 16 23 C -0.09 -1.94 9.67 -39.66 -0.38 -2.33 16 24 H 0.03 0.36 7.62 -51.93 -0.40 -0.04 16 25 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.08 1.04 7.24 -51.93 -0.38 0.66 16 27 H 0.07 0.58 7.62 -51.93 -0.40 0.19 16 28 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.09 0.82 8.10 -51.93 -0.42 0.40 16 31 H 0.07 0.92 8.14 -51.92 -0.42 0.50 16 32 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.34 5.97 7.82 -39.29 -0.31 5.66 16 34 H 0.02 0.31 8.08 -51.93 -0.42 -0.11 16 35 H 0.06 1.07 8.08 -51.93 -0.42 0.65 16 36 H 0.09 1.92 8.06 -52.49 -0.42 1.49 16 37 H 0.12 3.18 6.16 -52.48 -0.32 2.86 16 38 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 39 H 0.09 2.13 8.06 -52.48 -0.42 1.71 16 40 H 0.08 1.68 8.06 -52.49 -0.42 1.26 16 LS Contribution 327.95 15.07 4.94 4.94 Total: -1.00 -27.57 327.95 -11.15 -38.72 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: -6.40 Total: 9.32 kcal Atomic # 6 Polarization: -23.99 SS G_CDS: -3.01 Total: -26.99 kcal Atomic # 7 Polarization: -38.16 SS G_CDS: -1.66 Total: -39.82 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.03 Total: 13.83 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -27.57 -11.15 -38.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712546882.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.337 kcal (2) G-P(sol) polarization free energy of solvation -27.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds