Wall clock time and date at job start Mon Mar 30 2020 04:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46891 * 1 3 3 C 1.47961 * 111.00168 * 2 1 4 4 C 1.53937 * 86.18355 * 137.58494 * 3 2 1 5 5 C 1.47967 * 111.00193 * 99.35992 * 2 1 3 6 6 H 1.08994 * 113.85672 * 336.74425 * 5 2 1 7 7 C 1.52995 * 113.75681 * 108.09874 * 5 2 1 8 8 N 1.46900 * 109.47467 * 281.55872 * 7 5 2 9 9 C 1.46895 * 111.00492 * 180.02562 * 8 7 5 10 10 C 1.50702 * 109.47125 * 180.02562 * 9 8 7 11 11 C 1.38641 * 119.74829 * 269.72810 * 10 9 8 12 12 C 1.37619 * 120.24342 * 179.72251 * 11 10 9 13 13 C 1.40709 * 119.74690 * 0.57208 * 12 11 10 14 14 C 1.41400 * 120.24510 * 179.68125 * 13 12 11 15 15 H 1.07998 * 119.99951 * 204.40893 * 14 13 12 16 16 C 1.39944 * 119.99719 * 24.40723 * 14 13 12 17 17 N 1.30819 * 120.00304 * 17.84498 * 16 14 13 18 18 Si 1.86803 * 119.99764 * 197.84770 * 16 14 13 19 19 H 1.48501 * 109.47048 * 60.00051 * 18 16 14 20 20 H 1.48498 * 109.46907 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.46922 * 299.99706 * 18 16 14 22 22 C 1.40712 * 119.51208 * 359.70256 * 13 12 11 23 23 C 1.37618 * 119.74506 * 0.02562 * 22 13 12 24 24 H 1.09004 * 109.47399 * 320.64127 * 1 2 3 25 25 H 1.09002 * 109.47342 * 80.64130 * 1 2 3 26 26 H 1.08998 * 109.47336 * 200.64415 * 1 2 3 27 27 H 1.08997 * 113.75994 * 23.26644 * 3 2 1 28 28 H 1.09001 * 113.85921 * 251.91252 * 3 2 1 29 29 H 1.09001 * 113.73397 * 221.92301 * 4 3 2 30 30 H 1.08995 * 113.83491 * 90.64928 * 4 3 2 31 31 H 1.09010 * 109.46903 * 161.56383 * 7 5 2 32 32 H 1.08998 * 109.47693 * 41.56175 * 7 5 2 33 33 H 1.00907 * 110.99754 * 56.04470 * 8 7 5 34 34 H 1.09001 * 109.47233 * 300.00437 * 9 8 7 35 35 H 1.09002 * 109.46952 * 60.00705 * 9 8 7 36 36 H 1.08000 * 119.87324 * 359.97438 * 11 10 9 37 37 H 1.08005 * 120.12390 * 180.27427 * 12 11 10 38 38 H 0.96995 * 120.00332 * 180.02562 * 17 16 14 39 39 H 1.08003 * 120.12749 * 180.02562 * 22 13 12 40 40 H 1.08001 * 119.87232 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9992 1.3813 0.0000 4 6 3.0211 0.8793 1.0360 5 6 1.9992 -0.2247 1.3630 6 1 1.3022 0.0434 2.1569 7 6 2.6262 -1.6062 1.5604 8 7 1.5643 -2.6038 1.7476 9 6 2.1303 -3.9454 1.9412 10 6 1.0134 -4.9396 2.1289 11 6 0.5416 -5.2116 3.4038 12 6 -0.4818 -6.1134 3.5864 13 6 -1.0412 -6.7692 2.4742 14 6 -2.0885 -7.7027 2.6503 15 1 -2.2532 -8.4749 1.9135 16 6 -2.9117 -7.6260 3.7795 17 7 -2.9566 -6.5237 4.4826 18 14 -3.9462 -9.0977 4.2828 19 1 -3.0581 -10.2541 4.5641 20 1 -4.7240 -8.7621 5.5025 21 1 -4.8794 -9.4465 3.1816 22 6 -0.5504 -6.4894 1.1855 23 6 0.4698 -5.5798 1.0260 24 1 -0.3634 0.7946 0.6517 25 1 -0.3634 0.1671 -1.0140 26 1 -0.3634 -0.9616 0.3623 27 1 1.3010 2.1198 0.3941 28 1 2.4461 1.6820 -0.9476 29 1 3.1921 1.5758 1.8568 30 1 3.9458 0.5049 0.5969 31 1 3.2695 -1.5909 2.4404 32 1 3.2178 -1.8657 0.6825 33 1 0.9169 -2.5923 0.9737 34 1 2.7187 -4.2213 1.0661 35 1 2.7698 -3.9460 2.8240 36 1 0.9761 -4.7109 4.2564 37 1 -0.8509 -6.3206 4.5801 38 1 -3.5268 -6.4707 5.2654 39 1 -0.9728 -6.9867 0.3248 40 1 0.8484 -5.3638 0.0378 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712546882.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:31 Heat of formation + Delta-G solvation = 27.908135 kcal Electronic energy + Delta-G solvation = -18706.230512 eV Core-core repulsion = 15906.223212 eV Total energy + Delta-G solvation = -2800.007300 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.89163 -39.53640 -36.83108 -35.30100 -32.32404 -31.47524 -31.12271 -29.34275 -27.21639 -25.01345 -24.74246 -23.33554 -22.81565 -21.67259 -20.40634 -19.20984 -17.47516 -17.17379 -16.67875 -16.17487 -15.89754 -15.76690 -15.46146 -15.20912 -14.97598 -14.30645 -14.02230 -13.81521 -13.58949 -13.54869 -13.39232 -12.89033 -12.68264 -12.62081 -12.39771 -12.32327 -12.22094 -12.01453 -11.61691 -11.59105 -11.33294 -11.19809 -10.98379 -9.77029 -9.35696 -9.33745 -9.11532 -8.62353 -6.32531 0.96688 1.16039 1.37679 1.48995 1.53688 2.21127 2.69857 2.96171 3.36282 3.65858 3.81083 4.00369 4.17792 4.26554 4.33140 4.36300 4.42678 4.49357 4.54320 4.58454 4.66044 4.77338 4.80475 4.84886 4.89903 4.99348 5.00765 5.07614 5.16829 5.29408 5.39781 5.45779 5.47991 5.72416 5.94960 6.09130 6.11045 6.19989 6.30816 6.40452 6.52108 6.72175 6.95410 7.05669 8.34300 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.035381 B = 0.003619 C = 0.003530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.195687 B = 7735.870598 C = 7930.154938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.008 4.008 2 N -0.503 5.503 3 C 0.002 3.998 4 C -0.129 4.129 5 C 0.030 3.970 6 H 0.076 0.924 7 C 0.080 3.920 8 N -0.694 5.694 9 C 0.131 3.869 10 C -0.201 4.201 11 C -0.086 4.086 12 C -0.191 4.191 13 C 0.080 3.920 14 C -0.505 4.505 15 H 0.074 0.926 16 C 0.035 3.965 17 N -0.825 5.825 18 Si 0.982 3.018 19 H -0.261 1.261 20 H -0.267 1.267 21 H -0.260 1.260 22 C -0.244 4.244 23 C -0.086 4.086 24 H 0.040 0.960 25 H 0.073 0.927 26 H 0.055 0.945 27 H 0.077 0.923 28 H 0.095 0.905 29 H 0.088 0.912 30 H 0.095 0.905 31 H 0.081 0.919 32 H 0.033 0.967 33 H 0.335 0.665 34 H 0.031 0.969 35 H 0.072 0.928 36 H 0.102 0.898 37 H 0.099 0.901 38 H 0.288 0.712 39 H 0.094 0.906 40 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.491 12.674 -4.178 15.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 N -0.226 5.226 3 C -0.127 4.127 4 C -0.168 4.168 5 C -0.080 4.080 6 H 0.094 0.906 7 C -0.050 4.050 8 N -0.325 5.325 9 C 0.003 3.997 10 C -0.202 4.202 11 C -0.105 4.105 12 C -0.211 4.211 13 C 0.078 3.922 14 C -0.534 4.534 15 H 0.092 0.908 16 C -0.180 4.180 17 N -0.451 5.451 18 Si 0.803 3.197 19 H -0.185 1.185 20 H -0.191 1.191 21 H -0.184 1.184 22 C -0.264 4.264 23 C -0.105 4.105 24 H 0.059 0.941 25 H 0.092 0.908 26 H 0.073 0.927 27 H 0.095 0.905 28 H 0.114 0.886 29 H 0.107 0.893 30 H 0.113 0.887 31 H 0.100 0.900 32 H 0.051 0.949 33 H 0.153 0.847 34 H 0.049 0.951 35 H 0.090 0.910 36 H 0.121 0.879 37 H 0.117 0.883 38 H 0.098 0.902 39 H 0.113 0.887 40 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 8.469 12.471 -3.843 15.557 hybrid contribution -0.985 -0.443 0.001 1.080 sum 7.484 12.028 -3.842 14.678 Atomic orbital electron populations 1.22828 0.89660 1.01240 1.02020 1.68481 1.09308 1.19923 1.24862 1.23939 0.97414 0.90496 1.00805 1.23336 0.97718 0.96598 0.99114 1.23525 0.97597 0.95565 0.91303 0.90573 1.21868 0.92990 0.90063 1.00058 1.60606 1.18108 1.05177 1.48570 1.20463 0.93222 0.86307 0.99673 1.19354 1.03917 1.04166 0.92788 1.20736 0.96283 0.97064 0.96371 1.21275 0.98866 1.02483 0.98441 1.17952 0.91409 0.91243 0.91625 1.19824 1.13134 1.13554 1.06931 0.90791 1.26763 0.97530 0.98950 0.94727 1.69882 1.33176 1.26876 1.15175 0.85257 0.77950 0.78000 0.78503 1.18504 1.19103 1.18385 1.21141 1.03897 1.05439 0.95887 1.20672 0.96076 0.96392 0.97324 0.94138 0.90848 0.92652 0.90476 0.88627 0.89312 0.88675 0.90022 0.94858 0.84699 0.95137 0.91006 0.87950 0.88318 0.90180 0.88748 0.87131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.19 9.65 127.69 1.23 1.04 16 2 N -0.50 -11.32 6.36 -909.86 -5.79 -17.10 16 3 C 0.00 0.03 7.97 86.41 0.69 0.72 16 4 C -0.13 -2.04 7.85 31.24 0.25 -1.79 16 5 C 0.03 0.65 3.50 45.02 0.16 0.81 16 6 H 0.08 1.82 7.93 -2.39 -0.02 1.81 16 7 C 0.08 1.98 5.72 86.30 0.49 2.47 16 8 N -0.69 -22.13 6.49 -517.94 -3.36 -25.49 16 9 C 0.13 4.50 5.80 85.56 0.50 5.00 16 10 C -0.20 -8.68 5.41 -19.67 -0.11 -8.79 16 11 C -0.09 -4.11 9.67 22.22 0.21 -3.89 16 12 C -0.19 -10.44 8.70 22.73 0.20 -10.24 16 13 C 0.08 4.49 5.57 -21.29 -0.12 4.37 16 14 C -0.50 -28.21 9.05 23.46 0.21 -27.99 16 15 H 0.07 3.98 7.91 -2.91 -0.02 3.96 16 16 C 0.04 1.82 5.14 85.26 0.44 2.26 16 17 N -0.83 -44.51 10.95 21.83 0.24 -44.27 16 18 Si 0.98 39.14 29.60 68.60 2.03 41.17 16 19 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 20 H -0.27 -10.00 7.11 99.48 0.71 -9.29 16 21 H -0.26 -9.99 7.11 99.48 0.71 -9.29 16 22 C -0.24 -12.43 9.80 22.73 0.22 -12.21 16 23 C -0.09 -3.86 9.67 22.22 0.21 -3.64 16 24 H 0.04 0.83 7.62 -2.38 -0.02 0.82 16 25 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.05 1.49 7.24 -2.39 -0.02 1.47 16 27 H 0.08 1.12 7.62 -2.39 -0.02 1.11 16 28 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.09 1.42 8.10 -2.39 -0.02 1.40 16 31 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 32 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.34 11.36 7.82 -89.69 -0.70 10.66 16 34 H 0.03 0.98 8.08 -2.39 -0.02 0.96 16 35 H 0.07 2.32 8.08 -2.39 -0.02 2.30 16 36 H 0.10 4.48 8.06 -2.91 -0.02 4.46 16 37 H 0.10 5.64 6.16 -2.91 -0.02 5.63 16 38 H 0.29 14.03 8.30 -92.71 -0.77 13.26 16 39 H 0.09 4.57 8.06 -2.91 -0.02 4.55 16 40 H 0.11 4.29 8.06 -2.91 -0.02 4.26 16 Total: -1.00 -60.35 327.95 -1.98 -62.33 By element: Atomic # 1 Polarization: 34.94 SS G_CDS: 0.31 Total: 35.25 kcal Atomic # 6 Polarization: -56.49 SS G_CDS: 4.59 Total: -51.90 kcal Atomic # 7 Polarization: -77.95 SS G_CDS: -8.91 Total: -86.86 kcal Atomic # 14 Polarization: 39.14 SS G_CDS: 2.03 Total: 41.17 kcal Total: -60.35 -1.98 -62.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712546882.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.238 kcal (2) G-P(sol) polarization free energy of solvation -60.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds