Wall clock time and date at job start Mon Mar 30 2020 05:22:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.13601 * 1
3 3 C 1.47200 * 179.97438 * 2 1
4 4 N 1.46500 * 109.47112 * 77.24835 * 3 2 1
5 5 C 1.36782 * 119.99913 * 276.32470 * 4 3 2
6 6 H 1.07994 * 119.99424 * 0.40646 * 5 4 3
7 7 C 1.38826 * 119.99978 * 180.41060 * 5 4 3
8 8 N 1.31559 * 120.00257 * 351.14695 * 7 5 4
9 9 Si 1.86795 * 119.99822 * 171.14324 * 7 5 4
10 10 H 1.48503 * 109.47530 * 0.02562 * 9 7 5
11 11 H 1.48506 * 109.46916 * 119.99844 * 9 7 5
12 12 H 1.48506 * 109.47307 * 239.99794 * 9 7 5
13 13 C 1.38682 * 120.00255 * 96.31858 * 4 3 2
14 14 C 1.39100 * 120.11128 * 89.97932 * 13 4 3
15 15 C 1.37826 * 120.14216 * 179.97438 * 14 13 4
16 16 C 1.39263 * 120.37677 * 0.02562 * 15 14 13
17 17 N 1.39830 * 119.88245 * 180.02562 * 16 15 14
18 18 C 1.38457 * 120.22678 * 359.78539 * 16 15 14
19 19 C 1.39691 * 119.85112 * 0.44520 * 18 16 15
20 20 C 1.47321 * 120.18666 * 179.81246 * 19 18 16
21 21 O 1.21523 * 120.00402 * 179.44682 * 20 19 18
22 22 O 1.34777 * 119.99702 * 359.72003 * 20 19 18
23 23 H 1.08997 * 109.47376 * 317.24748 * 3 2 1
24 24 H 1.09005 * 109.46924 * 197.24167 * 3 2 1
25 25 H 0.96992 * 120.00370 * 180.02562 * 8 7 5
26 26 H 1.07997 * 119.93298 * 0.02810 * 14 13 4
27 27 H 1.08005 * 119.81385 * 180.02562 * 15 14 13
28 28 H 0.96994 * 120.00390 * 359.97438 * 17 16 15
29 29 H 0.97001 * 119.99170 * 180.02562 * 17 16 15
30 30 H 1.07998 * 120.07119 * 180.25517 * 18 16 15
31 31 H 0.96701 * 117.00078 * 180.02562 * 22 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.1360 0.0000 0.0000
3 6 2.6080 0.0007 0.0000
4 7 3.0965 -0.3040 -1.3471
5 6 3.2020 -1.6042 -1.7586
6 1 2.9190 -2.4058 -1.0926
7 6 3.6729 -1.8932 -3.0321
8 7 3.8524 -0.9235 -3.9029
9 14 4.0519 -3.6590 -3.5093
10 1 3.7673 -4.5546 -2.3595
11 1 3.2048 -4.0523 -4.6640
12 1 5.4842 -3.7740 -3.8843
13 6 3.4518 0.7258 -2.2053
14 6 4.7581 1.2037 -2.2188
15 6 5.1120 2.2267 -3.0718
16 6 4.1672 2.7905 -3.9256
17 7 4.5377 3.8276 -4.7871
18 6 2.8635 2.3241 -3.9278
19 6 2.4932 1.2909 -3.0637
20 6 1.1072 0.7918 -3.0569
21 8 0.7911 -0.1140 -2.3110
22 8 0.1909 1.3362 -3.8820
23 1 2.9717 -0.7538 0.6976
24 1 2.9709 0.9824 0.3046
25 1 4.1811 -1.1255 -4.7928
26 1 5.4968 0.7715 -1.5601
27 1 6.1279 2.5934 -3.0782
28 1 5.4513 4.1535 -4.7892
29 1 3.8808 4.2217 -5.3822
30 1 2.1339 2.7603 -4.5938
31 1 -0.7055 0.9758 -3.8414
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000037930421.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:22:40
Heat of formation + Delta-G solvation = -5.578861 kcal
Electronic energy + Delta-G solvation = -20030.756985 eV
Core-core repulsion = 16892.205479 eV
Total energy + Delta-G solvation = -3138.551505 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 261.090 amu
Computer time = 0.34 seconds
Orbital eigenvalues (eV)
-41.08111 -39.49619 -38.01283 -36.54549 -36.44831 -34.15237 -33.22700 -31.75077
-29.18480 -28.09443 -25.66050 -24.45246 -22.75938 -21.46894 -19.30264 -18.80758
-18.53087 -17.86841 -17.30618 -16.88028 -16.20672 -16.12966 -15.81721 -15.45513
-14.87583 -14.73388 -14.26145 -13.94049 -13.59457 -13.47465 -13.42003 -12.97636
-12.93910 -12.76848 -12.23899 -12.12722 -12.01715 -11.77094 -11.72020 -11.25112
-10.84173 -10.70231 -9.40510 -9.04432 -8.26969 -7.30948 -5.19980 0.36030
1.20201 1.48132 1.52854 1.58636 2.07102 2.23950 2.30644 2.54458
2.63553 3.34252 3.39796 3.49196 3.72572 3.83615 4.39718 4.47499
4.70486 4.88900 4.95146 5.07039 5.22787 5.48256 5.54332 5.68822
5.77295 5.87177 6.14785 6.29013 6.34172 6.94719 7.13832 7.30187
7.35570 7.40726 7.89304 8.19637 9.24561
Molecular weight = 261.09amu
Principal moments of inertia in cm(-1)
A = 0.014822 B = 0.011641 C = 0.008749
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1888.604145 B = 2404.651250 C = 3199.518191
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.513 5.513
2 C 0.220 3.780
3 C 0.231 3.769
4 N -0.550 5.550
5 C -0.237 4.237
6 H 0.080 0.920
7 C -0.043 4.043
8 N -0.900 5.900
9 Si 0.957 3.043
10 H -0.273 1.273
11 H -0.312 1.312
12 H -0.287 1.287
13 C 0.280 3.720
14 C -0.092 4.092
15 C -0.151 4.151
16 C 0.173 3.827
17 N -0.877 5.877
18 C -0.153 4.153
19 C -0.102 4.102
20 C 0.503 3.497
21 O -0.507 6.507
22 O -0.528 6.528
23 H 0.124 0.876
24 H 0.125 0.875
25 H 0.244 0.756
26 H 0.123 0.877
27 H 0.137 0.863
28 H 0.403 0.597
29 H 0.399 0.601
30 H 0.114 0.886
31 H 0.410 0.590
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.793 9.433 1.191 10.648
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.195 5.195
2 C -0.098 4.098
3 C 0.102 3.898
4 N -0.265 5.265
5 C -0.365 4.365
6 H 0.098 0.902
7 C -0.239 4.239
8 N -0.546 5.546
9 Si 0.788 3.212
10 H -0.198 1.198
11 H -0.241 1.241
12 H -0.214 1.214
13 C 0.184 3.816
14 C -0.113 4.113
15 C -0.174 4.174
16 C 0.071 3.929
17 N -0.420 5.420
18 C -0.177 4.177
19 C -0.107 4.107
20 C 0.348 3.652
21 O -0.395 6.395
22 O -0.341 6.341
23 H 0.142 0.858
24 H 0.143 0.857
25 H 0.055 0.945
26 H 0.141 0.859
27 H 0.154 0.846
28 H 0.233 0.767
29 H 0.227 0.773
30 H 0.132 0.868
31 H 0.268 0.732
Dipole moment (debyes) X Y Z Total
from point charges 3.507 9.199 1.275 9.927
hybrid contribution -0.470 -1.411 -1.276 1.960
sum 3.037 7.788 -0.001 8.359
Atomic orbital electron populations
1.80827 1.15703 1.11081 1.11866 1.31529 0.97412 0.91080 0.89792
1.19056 0.78586 1.04735 0.87393 1.41425 1.72068 1.02128 1.10862
1.19475 1.35812 0.82961 0.98288 0.90239 1.25304 1.02283 0.99821
0.96474 1.70016 1.50372 1.29611 1.04580 0.85334 0.76843 0.81842
0.77144 1.19761 1.24088 1.21366 1.16755 0.90642 0.85619 0.88629
1.21051 0.94613 0.96092 0.99537 1.20651 0.98900 0.99336 0.98534
1.17420 0.92224 0.90837 0.92446 1.42150 1.14623 1.40014 1.45205
1.20446 0.95683 0.99652 1.01891 1.19263 0.89240 0.99689 1.02481
1.21494 0.86763 0.80119 0.76779 1.90887 1.80715 1.28376 1.39514
1.84549 1.24363 1.63634 1.61517 0.85804 0.85694 0.94495 0.85915
0.84553 0.76746 0.77310 0.86824 0.73172
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.51 -23.85 17.27 20.01 0.35 -23.50 16
2 C 0.22 9.21 12.73 89.44 1.14 10.34 16
3 C 0.23 8.05 6.15 84.57 0.52 8.57 16
4 N -0.55 -24.17 1.49 -520.91 -0.77 -24.94 16
5 C -0.24 -11.83 8.85 84.06 0.74 -11.08 16
6 H 0.08 3.95 7.84 -2.91 -0.02 3.93 16
7 C -0.04 -2.23 5.41 84.87 0.46 -1.77 16
8 N -0.90 -47.70 9.42 21.65 0.20 -47.49 16
9 Si 0.96 44.04 29.56 68.60 2.03 46.07 16
10 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16
11 H -0.31 -15.23 7.11 99.48 0.71 -14.52 16
12 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16
13 C 0.28 12.11 2.80 38.82 0.11 12.22 16
14 C -0.09 -3.47 9.33 22.38 0.21 -3.26 16
15 C -0.15 -4.93 9.87 22.42 0.22 -4.71 16
16 C 0.17 5.67 6.75 38.16 0.26 5.93 16
17 N -0.88 -20.45 9.09 -51.33 -0.47 -20.91 16
18 C -0.15 -5.86 9.45 22.67 0.21 -5.65 16
19 C -0.10 -4.50 4.72 -19.98 -0.09 -4.60 16
20 C 0.50 23.45 8.26 70.21 0.58 24.03 16
21 O -0.51 -26.07 10.45 19.76 0.21 -25.86 16
22 O -0.53 -20.71 12.68 -56.89 -0.72 -21.43 16
23 H 0.12 3.58 8.09 -2.39 -0.02 3.56 16
24 H 0.13 3.41 8.00 -2.38 -0.02 3.40 16
25 H 0.24 13.14 8.31 -92.71 -0.77 12.37 16
26 H 0.12 4.32 8.06 -2.91 -0.02 4.30 16
27 H 0.14 3.51 8.06 -2.91 -0.02 3.49 16
28 H 0.40 7.29 8.84 -92.71 -0.82 6.47 16
29 H 0.40 8.09 8.84 -92.71 -0.82 7.27 16
30 H 0.11 4.14 7.61 -2.91 -0.02 4.11 16
31 H 0.41 12.81 9.11 -74.06 -0.67 12.13 16
Total: -1.00 -69.30 278.36 4.09 -65.21
By element:
Atomic # 1 Polarization: 23.92 SS G_CDS: -1.09 Total: 22.83 kcal
Atomic # 6 Polarization: 25.67 SS G_CDS: 4.36 Total: 30.03 kcal
Atomic # 7 Polarization: -116.16 SS G_CDS: -0.69 Total: -116.85 kcal
Atomic # 8 Polarization: -46.77 SS G_CDS: -0.51 Total: -47.29 kcal
Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal
Total: -69.30 4.09 -65.21 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000037930421.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 59.635 kcal
(2) G-P(sol) polarization free energy of solvation -69.300 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.665 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.086 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.214 kcal
(6) G-S(sol) free energy of system = (1) + (5) -5.579 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.34 seconds