Wall clock time and date at job start Mon Mar 30 2020 05:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47112 * 77.24835 * 3 2 1 5 5 C 1.36782 * 119.99913 * 276.32470 * 4 3 2 6 6 H 1.07994 * 119.99424 * 0.40646 * 5 4 3 7 7 C 1.38826 * 119.99978 * 180.41060 * 5 4 3 8 8 N 1.31559 * 120.00257 * 351.14695 * 7 5 4 9 9 Si 1.86795 * 119.99822 * 171.14324 * 7 5 4 10 10 H 1.48503 * 109.47530 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46916 * 119.99844 * 9 7 5 12 12 H 1.48506 * 109.47307 * 239.99794 * 9 7 5 13 13 C 1.38682 * 120.00255 * 96.31858 * 4 3 2 14 14 C 1.39100 * 120.11128 * 89.97932 * 13 4 3 15 15 C 1.37826 * 120.14216 * 179.97438 * 14 13 4 16 16 C 1.39263 * 120.37677 * 0.02562 * 15 14 13 17 17 N 1.39830 * 119.88245 * 180.02562 * 16 15 14 18 18 C 1.38457 * 120.22678 * 359.78539 * 16 15 14 19 19 C 1.39691 * 119.85112 * 0.44520 * 18 16 15 20 20 C 1.47321 * 120.18666 * 179.81246 * 19 18 16 21 21 O 1.21523 * 120.00402 * 179.44682 * 20 19 18 22 22 O 1.34777 * 119.99702 * 359.72003 * 20 19 18 23 23 H 1.08997 * 109.47376 * 317.24748 * 3 2 1 24 24 H 1.09005 * 109.46924 * 197.24167 * 3 2 1 25 25 H 0.96992 * 120.00370 * 180.02562 * 8 7 5 26 26 H 1.07997 * 119.93298 * 0.02810 * 14 13 4 27 27 H 1.08005 * 119.81385 * 180.02562 * 15 14 13 28 28 H 0.96994 * 120.00390 * 359.97438 * 17 16 15 29 29 H 0.97001 * 119.99170 * 180.02562 * 17 16 15 30 30 H 1.07998 * 120.07119 * 180.25517 * 18 16 15 31 31 H 0.96701 * 117.00078 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0965 -0.3040 -1.3471 5 6 3.2020 -1.6042 -1.7586 6 1 2.9190 -2.4058 -1.0926 7 6 3.6729 -1.8932 -3.0321 8 7 3.8524 -0.9235 -3.9029 9 14 4.0519 -3.6590 -3.5093 10 1 3.7673 -4.5546 -2.3595 11 1 3.2048 -4.0523 -4.6640 12 1 5.4842 -3.7740 -3.8843 13 6 3.4518 0.7258 -2.2053 14 6 4.7581 1.2037 -2.2188 15 6 5.1120 2.2267 -3.0718 16 6 4.1672 2.7905 -3.9256 17 7 4.5377 3.8276 -4.7871 18 6 2.8635 2.3241 -3.9278 19 6 2.4932 1.2909 -3.0637 20 6 1.1072 0.7918 -3.0569 21 8 0.7911 -0.1140 -2.3110 22 8 0.1909 1.3362 -3.8820 23 1 2.9717 -0.7538 0.6976 24 1 2.9709 0.9824 0.3046 25 1 4.1811 -1.1255 -4.7928 26 1 5.4968 0.7715 -1.5601 27 1 6.1279 2.5934 -3.0782 28 1 5.4513 4.1535 -4.7892 29 1 3.8808 4.2217 -5.3822 30 1 2.1339 2.7603 -4.5938 31 1 -0.7055 0.9758 -3.8414 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037930421.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:40 Heat of formation + Delta-G solvation = -5.578861 kcal Electronic energy + Delta-G solvation = -20030.756985 eV Core-core repulsion = 16892.205479 eV Total energy + Delta-G solvation = -3138.551505 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.090 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.08111 -39.49619 -38.01283 -36.54549 -36.44831 -34.15237 -33.22700 -31.75077 -29.18480 -28.09443 -25.66050 -24.45246 -22.75938 -21.46894 -19.30264 -18.80758 -18.53087 -17.86841 -17.30618 -16.88028 -16.20672 -16.12966 -15.81721 -15.45513 -14.87583 -14.73388 -14.26145 -13.94049 -13.59457 -13.47465 -13.42003 -12.97636 -12.93910 -12.76848 -12.23899 -12.12722 -12.01715 -11.77094 -11.72020 -11.25112 -10.84173 -10.70231 -9.40510 -9.04432 -8.26969 -7.30948 -5.19980 0.36030 1.20201 1.48132 1.52854 1.58636 2.07102 2.23950 2.30644 2.54458 2.63553 3.34252 3.39796 3.49196 3.72572 3.83615 4.39718 4.47499 4.70486 4.88900 4.95146 5.07039 5.22787 5.48256 5.54332 5.68822 5.77295 5.87177 6.14785 6.29013 6.34172 6.94719 7.13832 7.30187 7.35570 7.40726 7.89304 8.19637 9.24561 Molecular weight = 261.09amu Principal moments of inertia in cm(-1) A = 0.014822 B = 0.011641 C = 0.008749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.604145 B = 2404.651250 C = 3199.518191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C 0.220 3.780 3 C 0.231 3.769 4 N -0.550 5.550 5 C -0.237 4.237 6 H 0.080 0.920 7 C -0.043 4.043 8 N -0.900 5.900 9 Si 0.957 3.043 10 H -0.273 1.273 11 H -0.312 1.312 12 H -0.287 1.287 13 C 0.280 3.720 14 C -0.092 4.092 15 C -0.151 4.151 16 C 0.173 3.827 17 N -0.877 5.877 18 C -0.153 4.153 19 C -0.102 4.102 20 C 0.503 3.497 21 O -0.507 6.507 22 O -0.528 6.528 23 H 0.124 0.876 24 H 0.125 0.875 25 H 0.244 0.756 26 H 0.123 0.877 27 H 0.137 0.863 28 H 0.403 0.597 29 H 0.399 0.601 30 H 0.114 0.886 31 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.793 9.433 1.191 10.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.195 5.195 2 C -0.098 4.098 3 C 0.102 3.898 4 N -0.265 5.265 5 C -0.365 4.365 6 H 0.098 0.902 7 C -0.239 4.239 8 N -0.546 5.546 9 Si 0.788 3.212 10 H -0.198 1.198 11 H -0.241 1.241 12 H -0.214 1.214 13 C 0.184 3.816 14 C -0.113 4.113 15 C -0.174 4.174 16 C 0.071 3.929 17 N -0.420 5.420 18 C -0.177 4.177 19 C -0.107 4.107 20 C 0.348 3.652 21 O -0.395 6.395 22 O -0.341 6.341 23 H 0.142 0.858 24 H 0.143 0.857 25 H 0.055 0.945 26 H 0.141 0.859 27 H 0.154 0.846 28 H 0.233 0.767 29 H 0.227 0.773 30 H 0.132 0.868 31 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 3.507 9.199 1.275 9.927 hybrid contribution -0.470 -1.411 -1.276 1.960 sum 3.037 7.788 -0.001 8.359 Atomic orbital electron populations 1.80827 1.15703 1.11081 1.11866 1.31529 0.97412 0.91080 0.89792 1.19056 0.78586 1.04735 0.87393 1.41425 1.72068 1.02128 1.10862 1.19475 1.35812 0.82961 0.98288 0.90239 1.25304 1.02283 0.99821 0.96474 1.70016 1.50372 1.29611 1.04580 0.85334 0.76843 0.81842 0.77144 1.19761 1.24088 1.21366 1.16755 0.90642 0.85619 0.88629 1.21051 0.94613 0.96092 0.99537 1.20651 0.98900 0.99336 0.98534 1.17420 0.92224 0.90837 0.92446 1.42150 1.14623 1.40014 1.45205 1.20446 0.95683 0.99652 1.01891 1.19263 0.89240 0.99689 1.02481 1.21494 0.86763 0.80119 0.76779 1.90887 1.80715 1.28376 1.39514 1.84549 1.24363 1.63634 1.61517 0.85804 0.85694 0.94495 0.85915 0.84553 0.76746 0.77310 0.86824 0.73172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -23.85 17.27 20.01 0.35 -23.50 16 2 C 0.22 9.21 12.73 89.44 1.14 10.34 16 3 C 0.23 8.05 6.15 84.57 0.52 8.57 16 4 N -0.55 -24.17 1.49 -520.91 -0.77 -24.94 16 5 C -0.24 -11.83 8.85 84.06 0.74 -11.08 16 6 H 0.08 3.95 7.84 -2.91 -0.02 3.93 16 7 C -0.04 -2.23 5.41 84.87 0.46 -1.77 16 8 N -0.90 -47.70 9.42 21.65 0.20 -47.49 16 9 Si 0.96 44.04 29.56 68.60 2.03 46.07 16 10 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 11 H -0.31 -15.23 7.11 99.48 0.71 -14.52 16 12 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 13 C 0.28 12.11 2.80 38.82 0.11 12.22 16 14 C -0.09 -3.47 9.33 22.38 0.21 -3.26 16 15 C -0.15 -4.93 9.87 22.42 0.22 -4.71 16 16 C 0.17 5.67 6.75 38.16 0.26 5.93 16 17 N -0.88 -20.45 9.09 -51.33 -0.47 -20.91 16 18 C -0.15 -5.86 9.45 22.67 0.21 -5.65 16 19 C -0.10 -4.50 4.72 -19.98 -0.09 -4.60 16 20 C 0.50 23.45 8.26 70.21 0.58 24.03 16 21 O -0.51 -26.07 10.45 19.76 0.21 -25.86 16 22 O -0.53 -20.71 12.68 -56.89 -0.72 -21.43 16 23 H 0.12 3.58 8.09 -2.39 -0.02 3.56 16 24 H 0.13 3.41 8.00 -2.38 -0.02 3.40 16 25 H 0.24 13.14 8.31 -92.71 -0.77 12.37 16 26 H 0.12 4.32 8.06 -2.91 -0.02 4.30 16 27 H 0.14 3.51 8.06 -2.91 -0.02 3.49 16 28 H 0.40 7.29 8.84 -92.71 -0.82 6.47 16 29 H 0.40 8.09 8.84 -92.71 -0.82 7.27 16 30 H 0.11 4.14 7.61 -2.91 -0.02 4.11 16 31 H 0.41 12.81 9.11 -74.06 -0.67 12.13 16 Total: -1.00 -69.30 278.36 4.09 -65.21 By element: Atomic # 1 Polarization: 23.92 SS G_CDS: -1.09 Total: 22.83 kcal Atomic # 6 Polarization: 25.67 SS G_CDS: 4.36 Total: 30.03 kcal Atomic # 7 Polarization: -116.16 SS G_CDS: -0.69 Total: -116.85 kcal Atomic # 8 Polarization: -46.77 SS G_CDS: -0.51 Total: -47.29 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -69.30 4.09 -65.21 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037930421.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.635 kcal (2) G-P(sol) polarization free energy of solvation -69.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds