Wall clock time and date at job start Mon Mar 30 2020 05:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39728 * 120.06862 * 260.27861 * 3 2 1 5 5 C 1.37857 * 120.02877 * 179.79359 * 4 3 2 6 6 C 1.38748 * 120.17819 * 0.45795 * 5 4 3 7 7 O 1.35862 * 119.92897 * 179.76680 * 6 5 4 8 8 C 1.42895 * 117.00288 * 0.03011 * 7 6 5 9 9 C 1.50694 * 109.46939 * 179.97438 * 8 7 6 10 10 O 1.21290 * 120.00588 * 359.97438 * 9 8 7 11 11 N 1.34784 * 119.99770 * 179.97438 * 9 8 7 12 12 C 1.37105 * 119.99805 * 179.97438 * 11 9 8 13 13 H 1.07998 * 120.00107 * 0.02562 * 12 11 9 14 14 C 1.38952 * 119.99711 * 180.02562 * 12 11 9 15 15 N 1.31408 * 119.99735 * 179.97438 * 14 12 11 16 16 Si 1.86803 * 120.00159 * 0.02562 * 14 12 11 17 17 H 1.48496 * 109.47293 * 89.99934 * 16 14 12 18 18 H 1.48499 * 109.47144 * 210.00332 * 16 14 12 19 19 H 1.48503 * 109.46924 * 329.99811 * 16 14 12 20 20 C 1.39529 * 120.13511 * 359.79468 * 6 5 4 21 21 N 1.39977 * 120.01189 * 179.97438 * 20 6 5 22 22 C 1.38334 * 119.97216 * 359.97438 * 20 6 5 23 23 H 1.08001 * 119.98322 * 0.02562 * 4 3 2 24 24 H 1.08008 * 119.91422 * 180.21236 * 5 4 3 25 25 H 1.09003 * 109.46838 * 299.99877 * 8 7 6 26 26 H 1.08997 * 109.47566 * 59.99330 * 8 7 6 27 27 H 0.96998 * 120.00175 * 0.02562 * 11 9 8 28 28 H 0.96999 * 120.00342 * 179.97438 * 15 14 12 29 29 H 0.97001 * 120.00310 * 179.97438 * 21 20 6 30 30 H 0.97007 * 120.00540 * 359.97438 * 21 20 6 31 31 H 1.07995 * 120.08883 * 179.97438 * 22 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2680 0.2051 1.1919 5 6 4.6465 0.2014 1.1917 6 6 5.3433 0.0042 0.0081 7 8 6.7019 0.0062 0.0130 8 6 7.3459 0.2163 1.2711 9 6 8.8406 0.1853 1.0817 10 8 9.3084 0.0010 -0.0221 11 7 9.6576 0.3625 2.1389 12 6 11.0175 0.3338 1.9666 13 1 11.4340 0.1697 0.9837 14 6 11.8599 0.5159 3.0566 15 7 13.1632 0.4880 2.8915 16 14 11.1395 0.7991 4.7567 17 1 10.9492 -0.5069 5.4375 18 1 12.0670 1.6420 5.5532 19 1 9.8296 1.4873 4.6309 20 6 4.6515 -0.1954 -1.1871 21 7 5.3570 -0.3935 -2.3797 22 6 3.2682 -0.1975 -1.1929 23 1 2.7287 0.3625 2.1143 24 1 5.1857 0.3562 2.1146 25 1 7.0502 1.1853 1.6733 26 1 7.0517 -0.5705 1.9658 27 1 9.2836 0.5095 3.0217 28 1 13.7513 0.6154 3.6523 29 1 4.8760 -0.5327 -3.2104 30 1 6.3271 -0.3916 -2.3755 31 1 2.7309 -0.3515 -2.1169 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042410787.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:58 Heat of formation + Delta-G solvation = -35.658620 kcal Electronic energy + Delta-G solvation = -17978.596160 eV Core-core repulsion = 14838.740299 eV Total energy + Delta-G solvation = -3139.855861 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.090 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.39855 -40.17903 -38.64964 -37.28341 -36.02860 -35.32474 -33.80690 -31.52897 -30.26232 -29.18929 -26.48263 -24.26461 -23.46774 -21.40772 -20.44864 -19.75888 -19.10484 -18.08938 -17.41903 -17.19051 -16.91771 -16.36705 -15.93620 -15.36380 -15.22614 -15.05159 -14.82179 -14.69099 -14.60278 -14.21884 -13.84338 -13.60464 -13.41279 -12.97733 -12.96173 -12.41326 -12.09108 -11.97080 -11.93976 -11.52570 -11.51964 -10.49269 -10.28614 -9.54192 -8.41482 -8.24589 -6.04634 -0.09524 0.55617 1.33739 1.38998 1.48582 1.68083 1.85336 1.87452 2.02070 2.25444 2.84058 2.98587 3.07288 3.14035 3.21196 3.88244 3.97088 4.20108 4.25039 4.30148 4.31791 4.57647 4.85647 4.91072 5.30653 5.42287 5.50649 5.64808 5.90858 6.21500 6.52106 6.55106 6.68264 6.84385 7.02848 7.33213 7.87826 8.75557 Molecular weight = 261.09amu Principal moments of inertia in cm(-1) A = 0.036070 B = 0.003908 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.078839 B = 7163.289831 C = 7924.224268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C 0.289 3.711 3 C -0.032 4.032 4 C -0.076 4.076 5 C -0.166 4.166 6 C 0.070 3.930 7 O -0.313 6.313 8 C 0.061 3.939 9 C 0.447 3.553 10 O -0.614 6.614 11 N -0.578 5.578 12 C -0.332 4.332 13 H 0.056 0.944 14 C -0.013 4.013 15 N -0.931 5.931 16 Si 0.964 3.036 17 H -0.255 1.255 18 H -0.278 1.278 19 H -0.223 1.223 20 C 0.183 3.817 21 N -0.870 5.870 22 C -0.118 4.118 23 H 0.156 0.844 24 H 0.164 0.836 25 H 0.120 0.880 26 H 0.121 0.879 27 H 0.394 0.606 28 H 0.281 0.719 29 H 0.409 0.591 30 H 0.404 0.596 31 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.850 0.154 0.732 19.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.149 5.149 2 C -0.025 4.025 3 C -0.036 4.036 4 C -0.098 4.098 5 C -0.185 4.185 6 C 0.020 3.980 7 O -0.225 6.225 8 C -0.017 4.017 9 C 0.234 3.766 10 O -0.499 6.499 11 N -0.220 5.220 12 C -0.461 4.461 13 H 0.074 0.926 14 C -0.212 4.212 15 N -0.571 5.571 16 Si 0.784 3.216 17 H -0.180 1.180 18 H -0.203 1.203 19 H -0.146 1.146 20 C 0.078 3.922 21 N -0.411 5.411 22 C -0.144 4.144 23 H 0.173 0.827 24 H 0.181 0.819 25 H 0.138 0.862 26 H 0.139 0.861 27 H 0.231 0.769 28 H 0.090 0.910 29 H 0.240 0.760 30 H 0.232 0.768 31 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -20.959 0.021 -0.074 20.960 hybrid contribution 1.127 0.070 0.435 1.210 sum -19.832 0.091 0.361 19.836 Atomic orbital electron populations 1.81268 1.13339 1.11259 1.09032 1.25784 0.92575 0.91997 0.92183 1.15638 0.83144 1.09549 0.95290 1.20929 0.92961 0.98761 0.97169 1.21245 0.94843 1.05146 0.97254 1.19153 0.82064 1.02359 0.94470 1.86028 1.16613 1.87296 1.32600 1.22449 0.88165 1.05574 0.85535 1.20480 0.89127 0.82369 0.84604 1.90579 1.78293 1.54322 1.26729 1.41796 1.05371 1.65532 1.09318 1.18977 0.80993 1.49410 0.96735 0.92616 1.26160 0.95228 0.95896 1.03899 1.69798 1.04272 1.49119 1.33954 0.85378 0.80152 0.79885 0.76228 1.17971 1.20273 1.14568 1.17067 0.90649 0.98962 0.85539 1.42409 1.09556 1.82434 1.06701 1.20408 0.90297 1.05293 0.98395 0.82666 0.81871 0.86209 0.86134 0.76915 0.90989 0.76050 0.76763 0.82989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -11.43 18.54 19.00 0.35 -11.08 16 2 C 0.29 5.57 15.32 88.33 1.35 6.92 16 3 C -0.03 -0.51 5.74 -21.31 -0.12 -0.64 16 4 C -0.08 -1.04 9.74 22.54 0.22 -0.82 16 5 C -0.17 -2.60 9.01 22.30 0.20 -2.40 16 6 C 0.07 1.53 6.71 22.70 0.15 1.68 16 7 O -0.31 -9.10 8.90 -72.96 -0.65 -9.75 16 8 C 0.06 1.61 5.22 71.23 0.37 1.98 16 9 C 0.45 18.86 7.86 87.65 0.69 19.55 16 10 O -0.61 -33.25 16.07 15.97 0.26 -33.00 16 11 N -0.58 -25.13 5.09 -306.98 -1.56 -26.69 16 12 C -0.33 -18.56 10.16 84.04 0.85 -17.71 16 13 H 0.06 3.76 7.39 -2.91 -0.02 3.74 16 14 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 15 N -0.93 -54.25 13.96 21.66 0.30 -53.95 16 16 Si 0.96 35.82 27.74 68.60 1.90 37.72 16 17 H -0.26 -8.96 7.11 99.48 0.71 -8.25 16 18 H -0.28 -10.43 7.11 99.48 0.71 -9.72 16 19 H -0.22 -6.59 6.52 99.48 0.65 -5.94 16 20 C 0.18 3.66 6.76 38.17 0.26 3.92 16 21 N -0.87 -16.35 9.09 -51.15 -0.46 -16.81 16 22 C -0.12 -1.89 9.59 22.65 0.22 -1.68 16 23 H 0.16 1.40 8.06 -2.91 -0.02 1.37 16 24 H 0.16 1.72 6.27 -2.91 -0.02 1.71 16 25 H 0.12 2.28 7.65 -2.39 -0.02 2.27 16 26 H 0.12 2.28 7.65 -2.39 -0.02 2.26 16 27 H 0.39 13.45 5.76 -92.71 -0.53 12.92 16 28 H 0.28 14.90 8.31 -92.71 -0.77 14.13 16 29 H 0.41 5.26 8.84 -92.71 -0.82 4.44 16 30 H 0.40 9.25 8.18 -92.70 -0.76 8.49 16 31 H 0.15 1.82 8.06 -2.91 -0.02 1.80 16 Total: -1.00 -77.60 287.91 3.86 -73.75 By element: Atomic # 1 Polarization: 30.14 SS G_CDS: -0.94 Total: 29.20 kcal Atomic # 6 Polarization: 5.95 SS G_CDS: 4.66 Total: 10.61 kcal Atomic # 7 Polarization: -107.16 SS G_CDS: -1.37 Total: -108.53 kcal Atomic # 8 Polarization: -42.35 SS G_CDS: -0.39 Total: -42.75 kcal Atomic # 14 Polarization: 35.82 SS G_CDS: 1.90 Total: 37.72 kcal Total: -77.60 3.86 -73.75 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042410787.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.091 kcal (2) G-P(sol) polarization free energy of solvation -77.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds