Wall clock time and date at job start Mon Mar 30 2020 04:39:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 S 1.76201 * 119.99870 * 359.97438 * 7 2 1 10 10 O 1.42104 * 106.40184 * 293.54149 * 9 7 2 11 11 O 1.42096 * 106.40178 * 66.46061 * 9 7 2 12 12 N 1.65602 * 107.21768 * 180.02562 * 9 7 2 13 13 C 1.48141 * 122.64278 * 269.71379 * 12 9 7 14 14 C 1.53220 * 110.45043 * 131.53514 * 13 12 9 15 15 O 1.43920 * 111.85363 * 45.50652 * 14 13 12 16 16 C 1.41091 * 111.16351 * 301.83721 * 15 14 13 17 17 H 1.09000 * 109.83840 * 309.00864 * 16 15 14 18 18 C 1.53100 * 119.00109 * 181.95876 * 16 15 14 19 19 C 1.55470 * 103.19172 * 201.92996 * 18 16 15 20 20 C 1.55035 * 106.31229 * 23.50620 * 19 18 16 21 21 C 1.45639 * 122.64426 * 89.99860 * 12 9 7 22 22 H 1.08997 * 109.90392 * 119.15130 * 21 12 9 23 23 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.23326 * 251.91850 * 13 12 9 25 25 H 1.09004 * 109.23342 * 11.29738 * 13 12 9 26 26 H 1.09003 * 109.15748 * 284.80511 * 14 13 12 27 27 H 1.09006 * 108.82589 * 165.98258 * 14 13 12 28 28 H 1.09004 * 110.93258 * 83.28432 * 18 16 15 29 29 H 1.09000 * 110.15808 * 320.21636 * 18 16 15 30 30 H 1.09002 * 110.08837 * 264.28776 * 19 18 16 31 31 H 1.09001 * 110.13459 * 142.74009 * 19 18 16 32 32 H 1.09002 * 110.29106 * 245.11410 * 20 19 18 33 33 H 1.08997 * 110.37611 * 123.03250 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 16 1.1235 -2.7200 -0.0005 10 8 0.4518 -2.7956 1.2495 11 8 0.4509 -2.7950 -1.2500 12 7 2.2483 -3.9355 -0.0005 13 6 2.7864 -4.5262 -1.2479 14 6 4.3159 -4.5964 -1.1906 15 8 4.7818 -5.1072 0.0717 16 6 4.3228 -4.3126 1.1434 17 1 4.5493 -3.2641 0.9501 18 6 4.7519 -4.6696 2.5690 19 6 3.6574 -4.0001 3.4471 20 6 2.4082 -3.8443 2.5422 21 6 2.7819 -4.5121 1.2258 22 1 2.5464 -5.5754 1.2690 23 1 -0.4850 0.8401 0.0004 24 1 2.3821 -5.5307 -1.3731 25 1 2.4856 -3.9106 -2.0957 26 1 4.7258 -3.5978 -1.3423 27 1 4.6683 -5.2493 -1.9893 28 1 5.7348 -4.2560 2.7949 29 1 4.7467 -5.7513 2.7031 30 1 3.9972 -3.0221 3.7880 31 1 3.4231 -4.6338 4.3025 32 1 2.1872 -2.7891 2.3814 33 1 1.5502 -4.3455 2.9901 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044510137.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:44 Heat of formation + Delta-G solvation = -130.236933 kcal Electronic energy + Delta-G solvation = -19308.094002 eV Core-core repulsion = 16267.288118 eV Total energy + Delta-G solvation = -3040.805885 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 261.087 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.74077 -36.09757 -35.10218 -34.12876 -33.98390 -33.08462 -29.21082 -27.81184 -26.18241 -25.62410 -22.39871 -20.69175 -20.34086 -18.51508 -17.26090 -16.36139 -16.04279 -15.74671 -15.10916 -14.87818 -14.45725 -14.23677 -13.71266 -13.67185 -13.19949 -12.54747 -12.21717 -12.03437 -11.51392 -11.44054 -11.28064 -11.24934 -10.99288 -10.75371 -10.65828 -10.61999 -10.38173 -10.18433 -10.00443 -9.96707 -9.40748 -9.28486 -8.83302 -8.03324 -6.73810 -5.36696 2.19147 3.03041 3.10190 3.16249 3.86134 4.00697 4.40252 4.59468 4.89403 4.99413 5.22974 5.30441 5.39366 5.58671 5.62285 5.68201 5.71789 5.83061 5.84745 5.93504 6.04583 6.11401 6.12984 6.20916 6.30293 6.40805 6.65874 6.86657 6.95123 7.28338 7.39349 7.50861 7.92728 8.84465 10.19554 Molecular weight = 261.09amu Principal moments of inertia in cm(-1) A = 0.022128 B = 0.009308 C = 0.008753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.046566 B = 3007.382816 C = 3198.014246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.134 3.866 3 Si 0.919 3.081 4 H -0.266 1.266 5 H -0.263 1.263 6 H -0.274 1.274 7 C -1.020 5.020 8 H 0.100 0.900 9 S 2.716 3.284 10 O -0.995 6.995 11 O -1.006 7.006 12 N -1.009 6.009 13 C 0.098 3.902 14 C 0.049 3.951 15 O -0.369 6.369 16 C 0.057 3.943 17 H 0.069 0.931 18 C -0.108 4.108 19 C -0.118 4.118 20 C -0.133 4.133 21 C 0.123 3.877 22 H 0.072 0.928 23 H 0.291 0.709 24 H 0.064 0.936 25 H 0.097 0.903 26 H 0.057 0.943 27 H 0.099 0.901 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.099 0.901 33 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.012 -6.507 2.279 11.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.084 4.084 3 Si 0.743 3.257 4 H -0.191 1.191 5 H -0.187 1.187 6 H -0.199 1.199 7 C -1.153 5.153 8 H 0.119 0.881 9 S 2.818 3.182 10 O -0.986 6.986 11 O -0.996 6.996 12 N -0.844 5.844 13 C -0.028 4.028 14 C -0.029 4.029 15 O -0.288 6.288 16 C -0.003 4.003 17 H 0.087 0.913 18 C -0.147 4.147 19 C -0.156 4.156 20 C -0.171 4.171 21 C 0.015 3.985 22 H 0.090 0.910 23 H 0.102 0.898 24 H 0.082 0.918 25 H 0.116 0.884 26 H 0.076 0.924 27 H 0.117 0.883 28 H 0.090 0.910 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.118 0.882 33 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 7.958 -6.730 2.274 10.668 hybrid contribution 0.783 1.426 -0.188 1.637 sum 8.741 -5.304 2.086 10.435 Atomic orbital electron populations 1.69895 1.06761 1.30768 1.39974 1.24741 0.94446 1.00731 0.88496 0.86189 0.80196 0.80121 0.79242 1.19116 1.18681 1.19933 1.30611 1.05992 1.11768 1.66944 0.88136 1.00532 0.71976 0.72883 0.72826 1.93368 1.72867 1.87397 1.44955 1.93344 1.72674 1.87588 1.45989 1.58394 1.62183 1.54284 1.09514 1.21918 0.93632 0.99608 0.87673 1.23051 0.94139 0.99918 0.85797 1.87786 1.73712 1.52755 1.14519 1.22997 0.93968 0.95056 0.88247 0.91320 1.22099 0.98888 1.01438 0.92233 1.22516 0.94479 1.00849 0.97793 1.22260 0.97315 1.04505 0.93039 1.21694 0.93644 0.97793 0.85395 0.91021 0.89843 0.91791 0.88446 0.92444 0.88329 0.91017 0.90845 0.91140 0.91264 0.88210 0.90102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.52 13.19 55.43 0.73 -23.78 16 2 C 0.13 3.68 5.46 -17.82 -0.10 3.58 16 3 Si 0.92 20.29 29.54 -169.99 -5.02 15.27 16 4 H -0.27 -5.67 7.11 56.52 0.40 -5.26 16 5 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 6 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 7 C -1.02 -27.62 9.68 30.60 0.30 -27.32 16 8 H 0.10 2.51 7.81 -52.49 -0.41 2.10 16 9 S 2.72 71.97 4.56 -107.50 -0.49 71.48 16 10 O -1.00 -28.07 14.60 -57.17 -0.83 -28.90 16 11 O -1.01 -29.44 17.00 -57.17 -0.97 -30.41 16 12 N -1.01 -21.14 3.30 -105.46 -0.35 -21.48 16 13 C 0.10 1.70 6.54 -3.03 -0.02 1.68 16 14 C 0.05 0.72 6.83 37.27 0.25 0.98 16 15 O -0.37 -5.99 10.86 -34.89 -0.38 -6.37 16 16 C 0.06 0.94 3.01 -25.30 -0.08 0.86 16 17 H 0.07 1.20 8.01 -51.93 -0.42 0.79 16 18 C -0.11 -1.44 6.78 -25.37 -0.17 -1.62 16 19 C -0.12 -1.64 6.89 -24.34 -0.17 -1.81 16 20 C -0.13 -2.43 4.91 -26.03 -0.13 -2.56 16 21 C 0.12 2.26 3.13 -67.39 -0.21 2.05 16 22 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 23 H 0.29 7.60 8.31 -40.82 -0.34 7.26 16 24 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 25 H 0.10 1.72 7.43 -51.93 -0.39 1.33 16 26 H 0.06 0.84 8.09 -51.93 -0.42 0.42 16 27 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.10 2.15 6.02 -51.93 -0.31 1.84 16 33 H 0.08 1.46 8.12 -51.93 -0.42 1.04 16 LS Contribution 278.38 15.07 4.20 4.20 Total: -1.00 -33.46 278.38 -7.90 -41.36 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -4.46 Total: 2.78 kcal Atomic # 6 Polarization: -23.82 SS G_CDS: -0.32 Total: -24.14 kcal Atomic # 7 Polarization: -45.65 SS G_CDS: 0.38 Total: -45.27 kcal Atomic # 8 Polarization: -63.49 SS G_CDS: -2.19 Total: -65.68 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Atomic # 16 Polarization: 71.97 SS G_CDS: -0.49 Total: 71.48 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -33.46 -7.90 -41.36 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044510137.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.875 kcal (2) G-P(sol) polarization free energy of solvation -33.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds