Wall clock time and date at job start Mon Mar 30 2020 04:39:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 S 1.76201 * 119.99870 * 359.97438 * 7 2 1 10 10 O 1.42104 * 106.40184 * 293.54149 * 9 7 2 11 11 O 1.42096 * 106.40178 * 66.46061 * 9 7 2 12 12 N 1.65602 * 107.21768 * 180.02562 * 9 7 2 13 13 C 1.48141 * 122.64278 * 269.71379 * 12 9 7 14 14 C 1.53220 * 110.45043 * 131.53514 * 13 12 9 15 15 O 1.43920 * 111.85363 * 45.50652 * 14 13 12 16 16 C 1.41091 * 111.16351 * 301.83721 * 15 14 13 17 17 H 1.09000 * 109.83840 * 309.00864 * 16 15 14 18 18 C 1.53100 * 119.00109 * 181.95876 * 16 15 14 19 19 C 1.55470 * 103.19172 * 201.92996 * 18 16 15 20 20 C 1.55035 * 106.31229 * 23.50620 * 19 18 16 21 21 C 1.45639 * 122.64426 * 89.99860 * 12 9 7 22 22 H 1.08997 * 109.90392 * 119.15130 * 21 12 9 23 23 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.23326 * 251.91850 * 13 12 9 25 25 H 1.09004 * 109.23342 * 11.29738 * 13 12 9 26 26 H 1.09003 * 109.15748 * 284.80511 * 14 13 12 27 27 H 1.09006 * 108.82589 * 165.98258 * 14 13 12 28 28 H 1.09004 * 110.93258 * 83.28432 * 18 16 15 29 29 H 1.09000 * 110.15808 * 320.21636 * 18 16 15 30 30 H 1.09002 * 110.08837 * 264.28776 * 19 18 16 31 31 H 1.09001 * 110.13459 * 142.74009 * 19 18 16 32 32 H 1.09002 * 110.29106 * 245.11410 * 20 19 18 33 33 H 1.08997 * 110.37611 * 123.03250 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 16 1.1235 -2.7200 -0.0005 10 8 0.4518 -2.7956 1.2495 11 8 0.4509 -2.7950 -1.2500 12 7 2.2483 -3.9355 -0.0005 13 6 2.7864 -4.5262 -1.2479 14 6 4.3159 -4.5964 -1.1906 15 8 4.7818 -5.1072 0.0717 16 6 4.3228 -4.3126 1.1434 17 1 4.5493 -3.2641 0.9501 18 6 4.7519 -4.6696 2.5690 19 6 3.6574 -4.0001 3.4471 20 6 2.4082 -3.8443 2.5422 21 6 2.7819 -4.5121 1.2258 22 1 2.5464 -5.5754 1.2690 23 1 -0.4850 0.8401 0.0004 24 1 2.3821 -5.5307 -1.3731 25 1 2.4856 -3.9106 -2.0957 26 1 4.7258 -3.5978 -1.3423 27 1 4.6683 -5.2493 -1.9893 28 1 5.7348 -4.2560 2.7949 29 1 4.7467 -5.7513 2.7031 30 1 3.9972 -3.0221 3.7880 31 1 3.4231 -4.6338 4.3025 32 1 2.1872 -2.7891 2.3814 33 1 1.5502 -4.3455 2.9901 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044510137.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:44 Heat of formation + Delta-G solvation = -156.415495 kcal Electronic energy + Delta-G solvation = -19309.229190 eV Core-core repulsion = 16267.288118 eV Total energy + Delta-G solvation = -3041.941072 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 261.087 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.06775 -37.77094 -36.84515 -36.16272 -35.63164 -35.12448 -30.50340 -29.10151 -28.30594 -27.00627 -23.72348 -22.23573 -21.53797 -20.48680 -19.14835 -17.95048 -17.62693 -17.26209 -16.99259 -16.30812 -15.87398 -15.80057 -15.50520 -15.26626 -14.64574 -14.03078 -13.86136 -13.49405 -13.42207 -13.04293 -12.94271 -12.80080 -12.57623 -12.50500 -12.34068 -12.25628 -11.86567 -11.81040 -11.51708 -11.28319 -11.26640 -11.06053 -10.74743 -9.56226 -8.77614 -7.52053 0.23010 1.30935 1.31212 1.47334 2.16870 2.54283 2.63452 2.72607 3.57987 3.71008 3.74290 3.89320 4.06591 4.13001 4.20027 4.37072 4.37358 4.46645 4.52388 4.57102 4.67540 4.83608 4.87791 5.04275 5.12648 5.15017 5.22002 5.28165 5.43617 5.46564 5.84626 5.87409 6.14058 6.74211 8.17472 Molecular weight = 261.09amu Principal moments of inertia in cm(-1) A = 0.022128 B = 0.009308 C = 0.008753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.046566 B = 3007.382816 C = 3198.014246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.073 3.927 3 Si 0.987 3.013 4 H -0.252 1.252 5 H -0.248 1.248 6 H -0.262 1.262 7 C -1.035 5.035 8 H 0.114 0.886 9 S 2.718 3.282 10 O -1.026 7.026 11 O -1.046 7.046 12 N -1.011 6.011 13 C 0.086 3.914 14 C 0.051 3.949 15 O -0.368 6.368 16 C 0.062 3.938 17 H 0.054 0.946 18 C -0.099 4.099 19 C -0.109 4.109 20 C -0.141 4.141 21 C 0.108 3.892 22 H 0.084 0.916 23 H 0.299 0.701 24 H 0.082 0.918 25 H 0.087 0.913 26 H 0.057 0.943 27 H 0.140 0.860 28 H 0.095 0.905 29 H 0.090 0.910 30 H 0.076 0.924 31 H 0.096 0.904 32 H 0.060 0.940 33 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.811 -6.806 2.747 13.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.141 4.141 3 Si 0.805 3.195 4 H -0.176 1.176 5 H -0.172 1.172 6 H -0.187 1.187 7 C -1.168 5.168 8 H 0.132 0.868 9 S 2.821 3.179 10 O -1.016 7.016 11 O -1.036 7.036 12 N -0.849 5.849 13 C -0.039 4.039 14 C -0.026 4.026 15 O -0.286 6.286 16 C 0.001 3.999 17 H 0.072 0.928 18 C -0.136 4.136 19 C -0.147 4.147 20 C -0.179 4.179 21 C 0.002 3.998 22 H 0.102 0.898 23 H 0.109 0.891 24 H 0.100 0.900 25 H 0.106 0.894 26 H 0.075 0.925 27 H 0.158 0.842 28 H 0.114 0.886 29 H 0.109 0.891 30 H 0.094 0.906 31 H 0.114 0.886 32 H 0.079 0.921 33 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 10.753 -7.052 2.739 13.147 hybrid contribution -0.124 1.416 -0.353 1.464 sum 10.629 -5.637 2.386 12.265 Atomic orbital electron populations 1.69989 1.08747 1.32345 1.41353 1.25991 0.95340 1.05208 0.87515 0.85169 0.79162 0.74908 0.80220 1.17636 1.17162 1.18651 1.30892 1.06750 1.12436 1.66752 0.86769 1.00092 0.72552 0.73678 0.71565 1.93322 1.74511 1.88050 1.45721 1.93280 1.74485 1.88402 1.47426 1.57949 1.61583 1.53414 1.11945 1.22277 0.95869 0.99970 0.85806 1.23187 0.91780 1.01169 0.86500 1.87796 1.73379 1.52702 1.14742 1.23043 0.92101 0.94621 0.90101 0.92828 1.22135 0.99511 1.02609 0.89379 1.22507 0.92367 1.02079 0.97775 1.22261 0.99528 1.01740 0.94388 1.22056 0.95426 0.98038 0.84323 0.89808 0.89076 0.89959 0.89432 0.92497 0.84248 0.88614 0.89116 0.90565 0.88556 0.92145 0.91021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -53.32 13.19 21.45 0.28 -53.04 16 2 C 0.07 4.02 5.46 84.66 0.46 4.49 16 3 Si 0.99 41.04 29.54 68.60 2.03 43.07 16 4 H -0.25 -9.85 7.11 99.48 0.71 -9.14 16 5 H -0.25 -9.65 7.11 99.48 0.71 -8.94 16 6 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 7 C -1.03 -57.12 9.68 67.74 0.66 -56.46 16 8 H 0.11 5.75 7.81 -2.91 -0.02 5.73 16 9 S 2.72 149.29 4.56 -56.49 -0.26 149.03 16 10 O -1.03 -60.65 14.60 -128.00 -1.87 -62.52 16 11 O -1.05 -63.81 17.00 -128.00 -2.18 -65.98 16 12 N -1.01 -42.72 3.30 -487.56 -1.61 -44.33 16 13 C 0.09 2.92 6.54 86.14 0.56 3.49 16 14 C 0.05 1.39 6.83 72.06 0.49 1.88 16 15 O -0.37 -10.81 10.86 -147.75 -1.60 -12.42 16 16 C 0.06 1.89 3.01 31.52 0.09 1.98 16 17 H 0.05 1.80 8.01 -2.39 -0.02 1.78 16 18 C -0.10 -2.27 6.78 31.48 0.21 -2.06 16 19 C -0.11 -2.78 6.89 32.14 0.22 -2.55 16 20 C -0.14 -5.17 4.91 31.05 0.15 -5.02 16 21 C 0.11 3.93 3.13 45.81 0.14 4.08 16 22 H 0.08 2.81 8.14 -2.39 -0.02 2.79 16 23 H 0.30 16.02 8.31 -92.71 -0.77 15.25 16 24 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 25 H 0.09 3.13 7.43 -2.38 -0.02 3.11 16 26 H 0.06 1.56 8.09 -2.39 -0.02 1.54 16 27 H 0.14 2.66 8.14 -2.38 -0.02 2.64 16 28 H 0.10 1.81 8.14 -2.38 -0.02 1.79 16 29 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.06 2.70 6.02 -2.39 -0.01 2.69 16 33 H 0.07 2.66 8.12 -2.39 -0.02 2.64 16 Total: -1.00 -74.96 278.38 -1.11 -76.07 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: 1.10 Total: 20.29 kcal Atomic # 6 Polarization: -53.18 SS G_CDS: 3.00 Total: -50.18 kcal Atomic # 7 Polarization: -96.04 SS G_CDS: -1.32 Total: -97.37 kcal Atomic # 8 Polarization: -135.27 SS G_CDS: -5.65 Total: -140.92 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 2.03 Total: 43.07 kcal Atomic # 16 Polarization: 149.29 SS G_CDS: -0.26 Total: 149.03 kcal Total: -74.96 -1.11 -76.07 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044510137.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.346 kcal (2) G-P(sol) polarization free energy of solvation -74.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds