Wall clock time and date at job start Mon Mar 30 2020 04:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86796 * 119.99818 * 2 1 4 4 H 1.48501 * 109.46821 * 239.99797 * 3 2 1 5 5 H 1.48491 * 109.47369 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46851 * 120.00190 * 3 2 1 7 7 C 1.37881 * 119.99660 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99334 * 180.02562 * 7 2 1 9 9 S 1.76193 * 120.00314 * 359.97438 * 7 2 1 10 10 O 1.42105 * 106.40403 * 293.54303 * 9 7 2 11 11 O 1.42098 * 106.40145 * 66.46232 * 9 7 2 12 12 N 1.65606 * 107.21910 * 180.02562 * 9 7 2 13 13 C 1.48141 * 122.64675 * 89.99751 * 12 9 7 14 14 C 1.52767 * 110.69479 * 228.37127 * 13 12 9 15 15 O 1.43926 * 111.92425 * 314.78345 * 14 13 12 16 16 C 1.41095 * 111.16311 * 57.99532 * 15 14 13 17 17 H 1.09001 * 109.77845 * 51.05500 * 16 15 14 18 18 C 1.52787 * 118.43188 * 178.19332 * 16 15 14 19 19 C 1.55468 * 102.76623 * 158.72804 * 18 16 15 20 20 C 1.55039 * 106.31049 * 336.04007 * 19 18 16 21 21 C 1.45635 * 122.64251 * 269.70981 * 12 9 7 22 22 H 1.08996 * 109.90666 * 240.87614 * 21 12 9 23 23 H 0.96997 * 119.99726 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.22943 * 348.68603 * 13 12 9 25 25 H 1.09004 * 109.22827 * 108.09878 * 13 12 9 26 26 H 1.08998 * 108.99002 * 75.41263 * 14 13 12 27 27 H 1.09001 * 108.98970 * 194.23928 * 14 13 12 28 28 H 1.09002 * 110.75025 * 277.04813 * 18 16 15 29 29 H 1.09004 * 110.74983 * 40.40376 * 18 16 15 30 30 H 1.08989 * 110.09110 * 95.25384 * 19 18 16 31 31 H 1.09005 * 110.08450 * 216.77693 * 19 18 16 32 32 H 1.08998 * 110.29158 * 114.88964 * 20 19 18 33 33 H 1.08998 * 110.29238 * 236.91039 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 16 1.1236 -2.7200 -0.0005 10 8 0.4519 -2.7956 1.2494 11 8 0.4510 -2.7950 -1.2500 12 7 2.2484 -3.9355 -0.0005 13 6 2.7912 -4.5220 1.2468 14 6 4.3159 -4.5969 1.1892 15 8 4.7816 -5.1080 -0.0731 16 6 4.3225 -4.3135 -1.1449 17 1 4.5509 -3.2654 -0.9513 18 6 4.7555 -4.6838 -2.5625 19 6 3.6713 -4.0004 -3.4425 20 6 2.4199 -3.8359 -2.5422 21 6 2.7774 -4.5163 -1.2268 22 1 2.5413 -5.5796 -1.2658 23 1 -0.4849 0.8400 -0.0004 24 1 2.4938 -3.9033 2.0935 25 1 2.3876 -5.5262 1.3767 26 1 4.7261 -3.5985 1.3407 27 1 4.6694 -5.2501 1.9871 28 1 5.7433 -4.2790 -2.7828 29 1 4.7403 -5.7649 -2.7010 30 1 4.0219 -3.0245 -3.7781 31 1 3.4355 -4.6288 -4.3014 32 1 2.2085 -2.7792 -2.3782 33 1 1.5596 -4.3266 -2.9973 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044510140.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:56 Heat of formation + Delta-G solvation = -130.452152 kcal Electronic energy + Delta-G solvation = -19309.172494 eV Core-core repulsion = 16268.357277 eV Total energy + Delta-G solvation = -3040.815217 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 261.087 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.74668 -36.09714 -35.10170 -34.14102 -33.98296 -33.08378 -29.23164 -27.80891 -26.18166 -25.60970 -22.38466 -20.70588 -20.33123 -18.51314 -17.25699 -16.36028 -16.04177 -15.74789 -15.10694 -14.88574 -14.46255 -14.24155 -13.71236 -13.66862 -13.20279 -12.54325 -12.20985 -12.02828 -11.51736 -11.44276 -11.27604 -11.23685 -10.98720 -10.75805 -10.66862 -10.62881 -10.37837 -10.18485 -10.00684 -9.98051 -9.42033 -9.27418 -8.83753 -8.03032 -6.73582 -5.36707 2.19093 3.04864 3.09758 3.14917 3.88208 4.00722 4.39777 4.59643 4.88882 4.99370 5.23520 5.30734 5.39239 5.58870 5.61959 5.67811 5.71653 5.82390 5.85157 5.93606 6.04738 6.11401 6.13092 6.20935 6.29972 6.40952 6.65530 6.86529 6.94554 7.28400 7.39475 7.50972 7.92210 8.84393 10.19809 Molecular weight = 261.09amu Principal moments of inertia in cm(-1) A = 0.022164 B = 0.009303 C = 0.008748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.992446 B = 3008.942120 C = 3200.068186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.134 3.866 3 Si 0.919 3.081 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.264 1.264 7 C -1.020 5.020 8 H 0.100 0.900 9 S 2.717 3.283 10 O -1.006 7.006 11 O -0.995 6.995 12 N -1.009 6.009 13 C 0.098 3.902 14 C 0.049 3.951 15 O -0.370 6.370 16 C 0.057 3.943 17 H 0.070 0.930 18 C -0.109 4.109 19 C -0.119 4.119 20 C -0.133 4.133 21 C 0.123 3.877 22 H 0.074 0.926 23 H 0.292 0.708 24 H 0.097 0.903 25 H 0.063 0.937 26 H 0.057 0.943 27 H 0.099 0.901 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.099 0.901 33 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.020 -6.521 -2.275 11.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.084 4.084 3 Si 0.743 3.257 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.189 1.189 7 C -1.154 5.154 8 H 0.118 0.882 9 S 2.818 3.182 10 O -0.996 6.996 11 O -0.986 6.986 12 N -0.844 5.844 13 C -0.028 4.028 14 C -0.029 4.029 15 O -0.289 6.289 16 C -0.003 4.003 17 H 0.088 0.912 18 C -0.147 4.147 19 C -0.157 4.157 20 C -0.171 4.171 21 C 0.015 3.985 22 H 0.092 0.908 23 H 0.102 0.898 24 H 0.116 0.884 25 H 0.082 0.918 26 H 0.075 0.925 27 H 0.117 0.883 28 H 0.089 0.911 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.117 0.883 33 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 7.966 -6.742 -2.272 10.680 hybrid contribution 0.798 1.431 0.195 1.650 sum 8.763 -5.311 -2.077 10.455 Atomic orbital electron populations 1.69888 1.06755 1.30875 1.39885 1.24737 0.94449 1.00711 0.88501 0.86224 0.79930 0.79763 0.79821 1.18797 1.20069 1.18875 1.30585 1.05952 1.11792 1.67047 0.88183 1.00521 0.71968 0.72868 0.72827 1.93346 1.72713 1.87584 1.45960 1.93369 1.72803 1.87395 1.45008 1.58398 1.62171 1.54284 1.09511 1.21820 0.93655 0.99668 0.87678 1.22968 0.94174 0.99907 0.85871 1.87800 1.73745 1.52768 1.14548 1.23102 0.94034 0.95047 0.88121 0.91224 1.22051 0.98912 1.01374 0.92368 1.22523 0.94556 1.00779 0.97817 1.22259 0.97371 1.04307 0.93127 1.21805 0.93661 0.97670 0.85381 0.90831 0.89786 0.88446 0.91830 0.92508 0.88319 0.91061 0.90750 0.91154 0.91274 0.88266 0.90119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.53 13.19 55.43 0.73 -23.80 16 2 C 0.13 3.69 5.46 -17.81 -0.10 3.59 16 3 Si 0.92 20.30 29.54 -169.99 -5.02 15.27 16 4 H -0.26 -5.61 7.11 56.52 0.40 -5.20 16 5 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 6 H -0.26 -5.65 7.11 56.52 0.40 -5.25 16 7 C -1.02 -27.63 9.65 30.60 0.30 -27.33 16 8 H 0.10 2.49 7.81 -52.49 -0.41 2.08 16 9 S 2.72 71.98 4.55 -107.50 -0.49 71.49 16 10 O -1.01 -29.45 17.01 -57.17 -0.97 -30.42 16 11 O -1.00 -28.07 14.64 -57.17 -0.84 -28.91 16 12 N -1.01 -21.12 3.30 -105.40 -0.35 -21.46 16 13 C 0.10 1.70 6.51 -3.26 -0.02 1.68 16 14 C 0.05 0.72 6.81 37.04 0.25 0.97 16 15 O -0.37 -5.99 10.85 -34.89 -0.38 -6.37 16 16 C 0.06 0.93 2.97 -25.21 -0.07 0.86 16 17 H 0.07 1.22 8.01 -51.93 -0.42 0.80 16 18 C -0.11 -1.45 6.77 -25.53 -0.17 -1.62 16 19 C -0.12 -1.64 6.88 -24.34 -0.17 -1.81 16 20 C -0.13 -2.42 4.88 -25.99 -0.13 -2.55 16 21 C 0.12 2.26 3.20 -67.10 -0.21 2.05 16 22 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 23 H 0.29 7.64 8.31 -40.82 -0.34 7.30 16 24 H 0.10 1.72 7.44 -51.93 -0.39 1.33 16 25 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.06 0.83 8.09 -51.93 -0.42 0.41 16 27 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.07 0.93 8.14 -51.94 -0.42 0.51 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.10 2.14 6.05 -51.93 -0.31 1.82 16 33 H 0.08 1.46 8.12 -51.93 -0.42 1.04 16 LS Contribution 278.34 15.07 4.19 4.19 Total: -1.00 -33.43 278.34 -7.91 -41.34 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -4.46 Total: 2.83 kcal Atomic # 6 Polarization: -23.84 SS G_CDS: -0.33 Total: -24.17 kcal Atomic # 7 Polarization: -45.64 SS G_CDS: 0.38 Total: -45.26 kcal Atomic # 8 Polarization: -63.51 SS G_CDS: -2.19 Total: -65.70 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.27 kcal Atomic # 16 Polarization: 71.98 SS G_CDS: -0.49 Total: 71.49 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -33.43 -7.91 -41.34 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044510140.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.114 kcal (2) G-P(sol) polarization free energy of solvation -33.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds