Wall clock time and date at job start Mon Mar 30 2020 04:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86796 * 119.99818 * 2 1 4 4 H 1.48501 * 109.46821 * 239.99797 * 3 2 1 5 5 H 1.48491 * 109.47369 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46851 * 120.00190 * 3 2 1 7 7 C 1.37881 * 119.99660 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99334 * 180.02562 * 7 2 1 9 9 S 1.76193 * 120.00314 * 359.97438 * 7 2 1 10 10 O 1.42105 * 106.40403 * 293.54303 * 9 7 2 11 11 O 1.42098 * 106.40145 * 66.46232 * 9 7 2 12 12 N 1.65606 * 107.21910 * 180.02562 * 9 7 2 13 13 C 1.48141 * 122.64675 * 89.99751 * 12 9 7 14 14 C 1.52767 * 110.69479 * 228.37127 * 13 12 9 15 15 O 1.43926 * 111.92425 * 314.78345 * 14 13 12 16 16 C 1.41095 * 111.16311 * 57.99532 * 15 14 13 17 17 H 1.09001 * 109.77845 * 51.05500 * 16 15 14 18 18 C 1.52787 * 118.43188 * 178.19332 * 16 15 14 19 19 C 1.55468 * 102.76623 * 158.72804 * 18 16 15 20 20 C 1.55039 * 106.31049 * 336.04007 * 19 18 16 21 21 C 1.45635 * 122.64251 * 269.70981 * 12 9 7 22 22 H 1.08996 * 109.90666 * 240.87614 * 21 12 9 23 23 H 0.96997 * 119.99726 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.22943 * 348.68603 * 13 12 9 25 25 H 1.09004 * 109.22827 * 108.09878 * 13 12 9 26 26 H 1.08998 * 108.99002 * 75.41263 * 14 13 12 27 27 H 1.09001 * 108.98970 * 194.23928 * 14 13 12 28 28 H 1.09002 * 110.75025 * 277.04813 * 18 16 15 29 29 H 1.09004 * 110.74983 * 40.40376 * 18 16 15 30 30 H 1.08989 * 110.09110 * 95.25384 * 19 18 16 31 31 H 1.09005 * 110.08450 * 216.77693 * 19 18 16 32 32 H 1.08998 * 110.29158 * 114.88964 * 20 19 18 33 33 H 1.08998 * 110.29238 * 236.91039 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 16 1.1236 -2.7200 -0.0005 10 8 0.4519 -2.7956 1.2494 11 8 0.4510 -2.7950 -1.2500 12 7 2.2484 -3.9355 -0.0005 13 6 2.7912 -4.5220 1.2468 14 6 4.3159 -4.5969 1.1892 15 8 4.7816 -5.1080 -0.0731 16 6 4.3225 -4.3135 -1.1449 17 1 4.5509 -3.2654 -0.9513 18 6 4.7555 -4.6838 -2.5625 19 6 3.6713 -4.0004 -3.4425 20 6 2.4199 -3.8359 -2.5422 21 6 2.7774 -4.5163 -1.2268 22 1 2.5413 -5.5796 -1.2658 23 1 -0.4849 0.8400 -0.0004 24 1 2.4938 -3.9033 2.0935 25 1 2.3876 -5.5262 1.3767 26 1 4.7261 -3.5985 1.3407 27 1 4.6694 -5.2501 1.9871 28 1 5.7433 -4.2790 -2.7828 29 1 4.7403 -5.7649 -2.7010 30 1 4.0219 -3.0245 -3.7781 31 1 3.4355 -4.6288 -4.3014 32 1 2.2085 -2.7792 -2.3782 33 1 1.5596 -4.3266 -2.9973 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044510140.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:56 Heat of formation + Delta-G solvation = -156.602361 kcal Electronic energy + Delta-G solvation = -19310.306452 eV Core-core repulsion = 16268.357277 eV Total energy + Delta-G solvation = -3041.949175 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 261.087 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.07171 -37.76790 -36.84539 -36.16198 -35.64187 -35.12561 -30.52443 -29.09850 -28.30446 -26.99018 -23.70744 -22.24804 -21.52861 -20.48517 -19.14307 -17.95016 -17.62466 -17.25916 -16.99032 -16.31349 -15.87690 -15.80353 -15.50449 -15.26907 -14.64765 -14.02233 -13.85558 -13.48729 -13.42312 -13.02893 -12.93912 -12.80586 -12.57442 -12.50580 -12.35875 -12.24546 -11.86947 -11.81620 -11.51506 -11.28586 -11.26323 -11.07710 -10.74775 -9.55607 -8.77394 -7.52042 0.22990 1.30932 1.32772 1.45982 2.16945 2.54513 2.64672 2.73306 3.56715 3.71656 3.74661 3.89851 4.06804 4.12896 4.20146 4.36952 4.37468 4.45883 4.52109 4.57537 4.67838 4.84056 4.87806 5.04317 5.12439 5.14737 5.22032 5.27983 5.43195 5.46733 5.84579 5.87372 6.14333 6.74178 8.17502 Molecular weight = 261.09amu Principal moments of inertia in cm(-1) A = 0.022164 B = 0.009303 C = 0.008748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.992446 B = 3008.942120 C = 3200.068186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.073 3.927 3 Si 0.987 3.013 4 H -0.249 1.249 5 H -0.263 1.263 6 H -0.251 1.251 7 C -1.036 5.036 8 H 0.114 0.886 9 S 2.718 3.282 10 O -1.046 7.046 11 O -1.026 7.026 12 N -1.011 6.011 13 C 0.086 3.914 14 C 0.051 3.949 15 O -0.369 6.369 16 C 0.062 3.938 17 H 0.055 0.945 18 C -0.099 4.099 19 C -0.110 4.110 20 C -0.140 4.140 21 C 0.108 3.892 22 H 0.086 0.914 23 H 0.299 0.701 24 H 0.087 0.913 25 H 0.082 0.918 26 H 0.056 0.944 27 H 0.140 0.860 28 H 0.095 0.905 29 H 0.091 0.909 30 H 0.075 0.925 31 H 0.096 0.904 32 H 0.059 0.941 33 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.827 -6.830 -2.738 13.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.140 4.140 3 Si 0.805 3.195 4 H -0.172 1.172 5 H -0.187 1.187 6 H -0.174 1.174 7 C -1.169 5.169 8 H 0.132 0.868 9 S 2.821 3.179 10 O -1.036 7.036 11 O -1.016 7.016 12 N -0.849 5.849 13 C -0.039 4.039 14 C -0.027 4.027 15 O -0.287 6.287 16 C 0.001 3.999 17 H 0.073 0.927 18 C -0.137 4.137 19 C -0.148 4.148 20 C -0.179 4.179 21 C 0.001 3.999 22 H 0.104 0.896 23 H 0.109 0.891 24 H 0.106 0.894 25 H 0.100 0.900 26 H 0.075 0.925 27 H 0.158 0.842 28 H 0.113 0.887 29 H 0.110 0.890 30 H 0.094 0.906 31 H 0.114 0.886 32 H 0.078 0.922 33 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 10.768 -7.073 -2.731 13.169 hybrid contribution -0.110 1.423 0.359 1.472 sum 10.658 -5.650 -2.372 12.294 Atomic orbital electron populations 1.69985 1.08744 1.32408 1.41290 1.25989 0.95339 1.05196 0.87513 0.85209 0.78874 0.74621 0.80822 1.17221 1.18723 1.17432 1.30872 1.06754 1.12452 1.66834 0.86751 1.00081 0.72546 0.73669 0.71562 1.93282 1.74528 1.88400 1.47400 1.93321 1.74452 1.88052 1.45778 1.57949 1.61569 1.53411 1.11942 1.22177 0.95886 1.00029 0.85810 1.23104 0.91819 1.01166 0.86569 1.87809 1.73411 1.52714 1.14769 1.23138 0.92149 0.94622 0.89960 0.92725 1.22088 0.99540 1.02530 0.89532 1.22511 0.92443 1.01982 0.97824 1.22261 0.99588 1.01559 0.94448 1.22166 0.95470 0.97923 0.84303 0.89586 0.89071 0.89441 0.89999 0.92542 0.84247 0.88685 0.89000 0.90603 0.88571 0.92196 0.91059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -53.35 13.19 21.45 0.28 -53.07 16 2 C 0.07 4.04 5.46 84.65 0.46 4.50 16 3 Si 0.99 41.02 29.54 68.60 2.03 43.04 16 4 H -0.25 -9.66 7.11 99.48 0.71 -8.95 16 5 H -0.26 -10.28 7.11 99.48 0.71 -9.58 16 6 H -0.25 -9.79 7.11 99.48 0.71 -9.08 16 7 C -1.04 -57.15 9.65 67.74 0.65 -56.50 16 8 H 0.11 5.74 7.81 -2.91 -0.02 5.71 16 9 S 2.72 149.30 4.55 -56.49 -0.26 149.04 16 10 O -1.05 -63.83 17.01 -128.00 -2.18 -66.01 16 11 O -1.03 -60.67 14.64 -128.00 -1.87 -62.54 16 12 N -1.01 -42.67 3.30 -487.39 -1.61 -44.28 16 13 C 0.09 2.93 6.51 85.99 0.56 3.49 16 14 C 0.05 1.38 6.81 71.90 0.49 1.87 16 15 O -0.37 -10.81 10.85 -147.77 -1.60 -12.41 16 16 C 0.06 1.88 2.97 31.58 0.09 1.98 16 17 H 0.05 1.83 8.01 -2.39 -0.02 1.81 16 18 C -0.10 -2.28 6.77 31.37 0.21 -2.07 16 19 C -0.11 -2.78 6.88 32.14 0.22 -2.56 16 20 C -0.14 -5.14 4.88 31.07 0.15 -4.99 16 21 C 0.11 3.92 3.20 46.00 0.15 4.07 16 22 H 0.09 2.88 8.14 -2.39 -0.02 2.86 16 23 H 0.30 16.08 8.31 -92.71 -0.77 15.31 16 24 H 0.09 3.12 7.44 -2.39 -0.02 3.10 16 25 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 26 H 0.06 1.54 8.09 -2.39 -0.02 1.52 16 27 H 0.14 2.65 8.14 -2.39 -0.02 2.63 16 28 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.10 1.94 8.14 -2.38 -0.02 1.92 16 32 H 0.06 2.68 6.05 -2.39 -0.01 2.66 16 33 H 0.07 2.65 8.12 -2.39 -0.02 2.63 16 Total: -1.00 -74.92 278.34 -1.11 -76.03 By element: Atomic # 1 Polarization: 19.31 SS G_CDS: 1.10 Total: 20.41 kcal Atomic # 6 Polarization: -53.21 SS G_CDS: 2.99 Total: -50.22 kcal Atomic # 7 Polarization: -96.02 SS G_CDS: -1.32 Total: -97.35 kcal Atomic # 8 Polarization: -135.31 SS G_CDS: -5.65 Total: -140.97 kcal Atomic # 14 Polarization: 41.02 SS G_CDS: 2.03 Total: 43.04 kcal Atomic # 16 Polarization: 149.30 SS G_CDS: -0.26 Total: 149.04 kcal Total: -74.92 -1.11 -76.03 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044510140.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.572 kcal (2) G-P(sol) polarization free energy of solvation -74.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds