Wall clock time and date at job start Mon Mar 30 2020 05:12:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34780 * 120.00229 * 2 1 4 4 O 1.21279 * 120.00031 * 180.02562 * 3 2 1 5 5 C 1.50699 * 119.99563 * 0.02562 * 3 2 1 6 6 C 1.50701 * 109.47162 * 179.97438 * 5 3 2 7 7 H 1.08010 * 119.99609 * 359.97438 * 6 5 3 8 8 C 1.37873 * 120.00266 * 180.02562 * 6 5 3 9 9 N 1.31509 * 119.99926 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 119.99838 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47038 * 59.99829 * 10 8 6 12 12 H 1.48503 * 109.46726 * 179.97438 * 10 8 6 13 13 H 1.48493 * 109.47135 * 299.99611 * 10 8 6 14 14 C 1.46499 * 120.00225 * 180.02562 * 2 1 3 15 15 H 1.09000 * 109.64697 * 180.69614 * 14 2 1 16 16 C 1.53877 * 109.64557 * 60.26982 * 14 2 1 17 17 C 1.55047 * 106.62528 * 192.96872 * 16 14 2 18 18 S 1.83289 * 102.56786 * 42.43425 * 17 16 14 19 19 O 1.42098 * 109.35684 * 90.18465 * 18 17 16 20 20 O 1.42098 * 109.35195 * 223.39186 * 18 17 16 21 21 C 1.54168 * 109.64701 * 301.12973 * 14 2 1 22 22 H 1.09002 * 109.47391 * 89.99442 * 1 2 3 23 23 H 1.09001 * 109.46813 * 329.99499 * 1 2 3 24 24 H 1.09004 * 109.47041 * 209.99626 * 1 2 3 25 25 H 1.09004 * 109.47017 * 299.99442 * 5 3 2 26 26 H 1.09002 * 109.47507 * 59.99434 * 5 3 2 27 27 H 0.97000 * 120.00091 * 180.02562 * 9 8 6 28 28 H 1.09006 * 110.02888 * 312.25963 * 16 14 2 29 29 H 1.08993 * 110.03045 * 73.67528 * 16 14 2 30 30 H 1.08996 * 110.79089 * 160.70063 * 17 16 14 31 31 H 1.08996 * 110.79122 * 284.16348 * 17 16 14 32 32 H 1.08998 * 110.31842 * 266.66083 * 21 14 2 33 33 H 1.09001 * 110.31494 * 28.85495 * 21 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3854 2.4723 0.0006 6 6 2.3646 3.6178 0.0011 7 1 3.4266 3.4204 0.0014 8 6 1.9051 4.9176 0.0022 9 7 0.6121 5.1579 0.0023 10 14 3.1190 6.3375 0.0036 11 1 3.9729 6.2598 -1.2089 12 1 2.3765 7.6235 0.0040 13 1 3.9726 6.2577 1.2161 14 6 2.1975 -1.2687 -0.0006 15 1 3.2697 -1.0728 0.0120 16 6 1.8338 -2.0755 -1.2594 17 6 2.3691 -3.5132 -1.0348 18 16 1.9173 -3.8388 0.7114 19 8 0.6248 -4.4272 0.7617 20 8 3.0087 -4.4653 1.3713 21 6 1.8067 -2.0935 1.2419 22 1 -0.3634 0.0001 -1.0277 23 1 -0.3633 0.8900 0.5139 24 1 -0.3633 -0.8901 0.5138 25 1 0.7585 2.5302 -0.8892 26 1 0.7590 2.5298 0.8908 27 1 0.2888 6.0724 0.0027 28 1 0.7518 -2.0962 -1.3899 29 1 2.3075 -1.6335 -2.1359 30 1 1.8730 -4.2192 -1.7008 31 1 3.4503 -3.5487 -1.1677 32 1 2.5042 -1.9028 2.0575 33 1 0.7887 -1.8547 1.5497 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049821673.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:57 Heat of formation + Delta-G solvation = -103.658768 kcal Electronic energy + Delta-G solvation = -17985.406231 eV Core-core repulsion = 14945.752863 eV Total energy + Delta-G solvation = -3039.653369 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 261.087 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.53606 -37.23586 -36.69354 -36.16712 -33.65489 -32.96260 -30.08930 -28.71721 -26.79210 -25.16875 -23.58741 -21.17294 -19.05460 -18.81745 -17.11556 -17.01145 -16.43129 -15.91535 -15.63978 -15.42764 -14.91482 -14.44062 -14.31636 -13.93145 -13.16551 -12.87622 -12.56735 -12.45280 -12.34102 -12.24068 -12.21189 -12.06770 -11.95196 -11.31447 -11.25304 -10.95327 -10.81526 -10.68429 -10.52827 -10.02405 -9.33013 -8.81201 -8.49996 -8.38360 -6.12698 -4.12901 -0.16522 2.29175 3.26752 3.32910 3.35514 3.36631 3.43186 3.49737 3.85171 4.18442 4.37187 4.42592 4.50705 4.62070 4.80262 5.17804 5.25291 5.29427 5.34407 5.48491 5.60369 5.67469 5.82528 5.99488 6.07719 6.79573 7.07083 7.21932 7.74712 7.89651 8.23693 8.95956 9.00768 9.52551 10.99453 Molecular weight = 261.09amu Principal moments of inertia in cm(-1) A = 0.048981 B = 0.004444 C = 0.004308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.517517 B = 6298.800643 C = 6498.396172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.623 5.623 3 C 0.518 3.482 4 O -0.540 6.540 5 C 0.009 3.991 6 C -0.513 4.513 7 H 0.074 0.926 8 C 0.057 3.943 9 N -0.900 5.900 10 Si 0.903 3.097 11 H -0.276 1.276 12 H -0.287 1.287 13 H -0.276 1.276 14 C 0.147 3.853 15 H 0.119 0.881 16 C -0.131 4.131 17 C -0.584 4.584 18 S 2.392 3.608 19 O -0.938 6.938 20 O -0.940 6.940 21 C -0.610 4.610 22 H 0.056 0.944 23 H 0.086 0.914 24 H 0.063 0.937 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.263 0.737 28 H 0.090 0.910 29 H 0.102 0.898 30 H 0.138 0.862 31 H 0.139 0.861 32 H 0.143 0.857 33 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.672 -15.891 -1.618 16.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.359 5.359 3 C 0.310 3.690 4 O -0.415 6.415 5 C -0.030 4.030 6 C -0.551 4.551 7 H 0.092 0.908 8 C -0.144 4.144 9 N -0.540 5.540 10 Si 0.730 3.270 11 H -0.201 1.201 12 H -0.213 1.213 13 H -0.201 1.201 14 C 0.041 3.959 15 H 0.137 0.863 16 C -0.171 4.171 17 C -0.714 4.714 18 S 2.575 3.425 19 O -0.935 6.935 20 O -0.937 6.937 21 C -0.740 4.740 22 H 0.074 0.926 23 H 0.104 0.896 24 H 0.082 0.918 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.109 0.891 29 H 0.121 0.879 30 H 0.157 0.843 31 H 0.158 0.842 32 H 0.161 0.839 33 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -1.282 -16.554 -1.103 16.640 hybrid contribution 0.478 1.505 -0.402 1.629 sum -0.803 -15.049 -1.505 15.145 Atomic orbital electron populations 1.21803 0.79760 1.03346 1.01993 1.48143 1.06722 1.04639 1.76392 1.22214 0.88593 0.85536 0.72622 1.90532 1.14935 1.87043 1.49007 1.19271 0.96795 0.87429 0.99473 1.21130 0.93855 0.89496 1.50626 0.90760 1.24992 0.95366 0.99039 0.95048 1.69935 1.12549 1.20644 1.50824 0.86476 0.80878 0.80732 0.78889 1.20108 1.21309 1.20103 1.21234 1.00512 0.85049 0.89144 0.86266 1.22598 1.03080 0.90903 1.00500 1.30564 1.11717 1.05490 1.23630 1.08915 0.75547 0.78420 0.79575 1.93617 1.39297 1.74650 1.85983 1.93615 1.54366 1.73204 1.72508 1.30977 1.12406 1.22272 1.08368 0.92571 0.89557 0.91833 0.93243 0.93267 0.92761 0.89126 0.87910 0.84341 0.84222 0.83870 0.83884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.92 9.06 59.85 0.54 1.46 16 2 N -0.62 -9.71 2.79 -172.71 -0.48 -10.19 16 3 C 0.52 11.04 7.67 -10.98 -0.08 10.95 16 4 O -0.54 -13.16 14.79 5.56 0.08 -13.08 16 5 C 0.01 0.23 4.01 -29.03 -0.12 0.11 16 6 C -0.51 -14.39 8.92 -34.44 -0.31 -14.70 16 7 H 0.07 2.17 6.75 -52.48 -0.35 1.82 16 8 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 9 N -0.90 -25.59 13.29 55.43 0.74 -24.85 16 10 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 13 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 14 C 0.15 1.81 2.95 -66.86 -0.20 1.62 16 15 H 0.12 1.64 6.91 -51.93 -0.36 1.28 16 16 C -0.13 -1.21 5.93 -25.19 -0.15 -1.36 16 17 C -0.58 -4.19 7.31 38.24 0.28 -3.91 16 18 S 2.39 22.70 6.10 -107.50 -0.66 22.04 16 19 O -0.94 -11.59 18.14 -57.71 -1.05 -12.64 16 20 O -0.94 -12.18 18.15 -57.71 -1.05 -13.23 16 21 C -0.61 -6.08 6.78 37.77 0.26 -5.82 16 22 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.09 1.18 6.44 -51.93 -0.33 0.84 16 24 H 0.06 0.60 6.28 -51.93 -0.33 0.27 16 25 H 0.05 1.20 8.11 -51.93 -0.42 0.78 16 26 H 0.05 1.20 7.40 -51.93 -0.38 0.81 16 27 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 28 H 0.09 0.72 7.38 -51.93 -0.38 0.34 16 29 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 30 H 0.14 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.14 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.14 1.38 8.14 -51.93 -0.42 0.95 16 33 H 0.14 1.29 6.13 -51.93 -0.32 0.97 16 LS Contribution 286.62 15.07 4.32 4.32 Total: -1.00 -36.36 286.62 -7.12 -43.48 By element: Atomic # 1 Polarization: 1.84 SS G_CDS: -4.13 Total: -2.29 kcal Atomic # 6 Polarization: -10.29 SS G_CDS: 0.13 Total: -10.17 kcal Atomic # 7 Polarization: -35.30 SS G_CDS: 0.26 Total: -35.04 kcal Atomic # 8 Polarization: -36.93 SS G_CDS: -2.01 Total: -38.94 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: 22.70 SS G_CDS: -0.66 Total: 22.04 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -36.36 -7.12 -43.48 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049821673.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.177 kcal (2) G-P(sol) polarization free energy of solvation -36.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds