Wall clock time and date at job start Mon Mar 30 2020 05:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34780 * 120.00229 * 2 1 4 4 O 1.21279 * 120.00031 * 180.02562 * 3 2 1 5 5 C 1.50699 * 119.99563 * 0.02562 * 3 2 1 6 6 C 1.50701 * 109.47162 * 179.97438 * 5 3 2 7 7 H 1.08010 * 119.99609 * 359.97438 * 6 5 3 8 8 C 1.37873 * 120.00266 * 180.02562 * 6 5 3 9 9 N 1.31509 * 119.99926 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 119.99838 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47038 * 59.99829 * 10 8 6 12 12 H 1.48503 * 109.46726 * 179.97438 * 10 8 6 13 13 H 1.48493 * 109.47135 * 299.99611 * 10 8 6 14 14 C 1.46499 * 120.00225 * 180.02562 * 2 1 3 15 15 H 1.09000 * 109.64697 * 180.69614 * 14 2 1 16 16 C 1.53877 * 109.64557 * 60.26982 * 14 2 1 17 17 C 1.55047 * 106.62528 * 192.96872 * 16 14 2 18 18 S 1.83289 * 102.56786 * 42.43425 * 17 16 14 19 19 O 1.42098 * 109.35684 * 90.18465 * 18 17 16 20 20 O 1.42098 * 109.35195 * 223.39186 * 18 17 16 21 21 C 1.54168 * 109.64701 * 301.12973 * 14 2 1 22 22 H 1.09002 * 109.47391 * 89.99442 * 1 2 3 23 23 H 1.09001 * 109.46813 * 329.99499 * 1 2 3 24 24 H 1.09004 * 109.47041 * 209.99626 * 1 2 3 25 25 H 1.09004 * 109.47017 * 299.99442 * 5 3 2 26 26 H 1.09002 * 109.47507 * 59.99434 * 5 3 2 27 27 H 0.97000 * 120.00091 * 180.02562 * 9 8 6 28 28 H 1.09006 * 110.02888 * 312.25963 * 16 14 2 29 29 H 1.08993 * 110.03045 * 73.67528 * 16 14 2 30 30 H 1.08996 * 110.79089 * 160.70063 * 17 16 14 31 31 H 1.08996 * 110.79122 * 284.16348 * 17 16 14 32 32 H 1.08998 * 110.31842 * 266.66083 * 21 14 2 33 33 H 1.09001 * 110.31494 * 28.85495 * 21 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3854 2.4723 0.0006 6 6 2.3646 3.6178 0.0011 7 1 3.4266 3.4204 0.0014 8 6 1.9051 4.9176 0.0022 9 7 0.6121 5.1579 0.0023 10 14 3.1190 6.3375 0.0036 11 1 3.9729 6.2598 -1.2089 12 1 2.3765 7.6235 0.0040 13 1 3.9726 6.2577 1.2161 14 6 2.1975 -1.2687 -0.0006 15 1 3.2697 -1.0728 0.0120 16 6 1.8338 -2.0755 -1.2594 17 6 2.3691 -3.5132 -1.0348 18 16 1.9173 -3.8388 0.7114 19 8 0.6248 -4.4272 0.7617 20 8 3.0087 -4.4653 1.3713 21 6 1.8067 -2.0935 1.2419 22 1 -0.3634 0.0001 -1.0277 23 1 -0.3633 0.8900 0.5139 24 1 -0.3633 -0.8901 0.5138 25 1 0.7585 2.5302 -0.8892 26 1 0.7590 2.5298 0.8908 27 1 0.2888 6.0724 0.0027 28 1 0.7518 -2.0962 -1.3899 29 1 2.3075 -1.6335 -2.1359 30 1 1.8730 -4.2192 -1.7008 31 1 3.4503 -3.5487 -1.1677 32 1 2.5042 -1.9028 2.0575 33 1 0.7887 -1.8547 1.5497 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049821673.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:56 Heat of formation + Delta-G solvation = -131.923823 kcal Electronic energy + Delta-G solvation = -17986.631896 eV Core-core repulsion = 14945.752863 eV Total energy + Delta-G solvation = -3040.879034 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 261.087 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.95154 -38.16193 -37.92106 -37.07792 -35.19611 -34.66623 -31.29983 -30.25653 -27.90323 -26.44801 -25.13448 -22.30557 -20.16473 -19.82772 -18.70225 -17.99964 -17.85668 -17.17043 -16.89769 -16.61032 -16.32821 -16.09374 -15.06315 -14.94601 -14.63845 -14.17703 -14.09174 -13.55691 -13.38451 -13.24508 -13.20989 -13.11841 -13.04530 -12.88553 -12.79079 -12.56359 -12.14046 -12.04869 -11.75475 -11.40989 -11.31645 -10.62321 -10.51046 -9.66980 -8.25513 -6.32611 -0.94339 1.40662 1.42581 1.49650 1.52056 1.80911 2.11065 2.43372 2.60951 3.06694 3.10127 3.32142 3.59645 3.68639 3.88913 4.01707 4.19192 4.32083 4.53857 4.62489 4.69078 4.80466 4.92560 5.01499 5.04034 5.09366 5.27544 5.58782 5.75087 6.01953 6.45750 6.80082 7.32034 7.42008 8.86081 Molecular weight = 261.09amu Principal moments of inertia in cm(-1) A = 0.048981 B = 0.004444 C = 0.004308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.517517 B = 6298.800643 C = 6498.396172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.611 5.611 3 C 0.518 3.482 4 O -0.581 6.581 5 C 0.013 3.987 6 C -0.540 4.540 7 H 0.054 0.946 8 C 0.013 3.987 9 N -0.922 5.922 10 Si 0.961 3.039 11 H -0.272 1.272 12 H -0.275 1.275 13 H -0.274 1.274 14 C 0.136 3.864 15 H 0.101 0.899 16 C -0.130 4.130 17 C -0.558 4.558 18 S 2.416 3.584 19 O -0.964 6.964 20 O -0.977 6.977 21 C -0.610 4.610 22 H 0.076 0.924 23 H 0.070 0.930 24 H 0.100 0.900 25 H 0.044 0.956 26 H 0.042 0.958 27 H 0.267 0.733 28 H 0.111 0.889 29 H 0.104 0.896 30 H 0.170 0.830 31 H 0.156 0.844 32 H 0.142 0.858 33 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.138 -16.947 -2.491 17.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.345 5.345 3 C 0.309 3.691 4 O -0.460 6.460 5 C -0.026 4.026 6 C -0.578 4.578 7 H 0.072 0.928 8 C -0.186 4.186 9 N -0.562 5.562 10 Si 0.786 3.214 11 H -0.198 1.198 12 H -0.200 1.200 13 H -0.199 1.199 14 C 0.030 3.970 15 H 0.119 0.881 16 C -0.169 4.169 17 C -0.690 4.690 18 S 2.601 3.399 19 O -0.961 6.961 20 O -0.974 6.974 21 C -0.739 4.739 22 H 0.094 0.906 23 H 0.089 0.911 24 H 0.119 0.881 25 H 0.062 0.938 26 H 0.060 0.940 27 H 0.076 0.924 28 H 0.129 0.871 29 H 0.122 0.878 30 H 0.188 0.812 31 H 0.174 0.826 32 H 0.160 0.840 33 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -1.799 -17.659 -1.948 17.857 hybrid contribution 0.574 1.787 -0.154 1.883 sum -1.225 -15.872 -2.102 16.058 Atomic orbital electron populations 1.22095 0.77607 1.04489 1.03690 1.47951 1.08053 1.04276 1.74181 1.21583 0.87840 0.86508 0.73125 1.90505 1.16297 1.87859 1.51375 1.19067 0.96088 0.88659 0.98772 1.21375 0.93690 0.91403 1.51357 0.92769 1.25733 0.97095 1.01279 0.94476 1.70006 1.13794 1.21388 1.51030 0.85561 0.78894 0.78086 0.78852 1.19753 1.19950 1.19935 1.21520 0.99307 0.84092 0.92035 0.88109 1.22600 1.04567 0.91289 0.98477 1.30458 1.13163 1.04600 1.20817 1.08171 0.74141 0.77236 0.80324 1.93580 1.40515 1.75108 1.86880 1.93568 1.55369 1.74017 1.74413 1.30962 1.13091 1.22409 1.07446 0.90583 0.91113 0.88117 0.93771 0.93974 0.92388 0.87098 0.87769 0.81226 0.82605 0.83958 0.82690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.44 9.06 127.77 1.16 2.60 16 2 N -0.61 -18.48 2.79 -818.72 -2.28 -20.76 16 3 C 0.52 22.45 7.67 87.66 0.67 23.12 16 4 O -0.58 -29.16 14.79 -3.02 -0.04 -29.20 16 5 C 0.01 0.66 4.01 29.10 0.12 0.78 16 6 C -0.54 -31.07 8.92 25.60 0.23 -30.84 16 7 H 0.05 3.28 6.75 -2.91 -0.02 3.26 16 8 C 0.01 0.74 5.46 84.65 0.46 1.20 16 9 N -0.92 -52.68 13.29 21.44 0.28 -52.39 16 10 Si 0.96 44.47 29.54 68.60 2.03 46.49 16 11 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 12 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 13 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 14 C 0.14 3.15 2.95 45.68 0.13 3.28 16 15 H 0.10 2.75 6.91 -2.39 -0.02 2.74 16 16 C -0.13 -1.98 5.93 31.59 0.19 -1.79 16 17 C -0.56 -5.92 7.31 72.68 0.53 -5.39 16 18 S 2.42 40.68 6.10 -56.49 -0.34 40.34 16 19 O -0.96 -21.52 18.14 -127.49 -2.31 -23.84 16 20 O -0.98 -24.15 18.15 -127.49 -2.31 -26.46 16 21 C -0.61 -11.17 6.78 72.38 0.49 -10.68 16 22 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 23 H 0.07 1.88 6.44 -2.39 -0.02 1.86 16 24 H 0.10 1.57 6.28 -2.38 -0.01 1.55 16 25 H 0.04 2.20 8.11 -2.39 -0.02 2.18 16 26 H 0.04 2.11 7.40 -2.39 -0.02 2.10 16 27 H 0.27 14.38 8.31 -92.71 -0.77 13.61 16 28 H 0.11 1.29 7.38 -2.38 -0.02 1.27 16 29 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.17 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.16 1.30 8.14 -2.39 -0.02 1.29 16 32 H 0.14 2.65 8.14 -2.39 -0.02 2.64 16 33 H 0.16 2.44 6.13 -2.39 -0.01 2.42 16 Total: -1.00 -79.56 286.62 0.11 -79.45 By element: Atomic # 1 Polarization: 2.98 SS G_CDS: 1.12 Total: 4.10 kcal Atomic # 6 Polarization: -21.70 SS G_CDS: 3.98 Total: -17.72 kcal Atomic # 7 Polarization: -71.16 SS G_CDS: -2.00 Total: -73.16 kcal Atomic # 8 Polarization: -74.83 SS G_CDS: -4.67 Total: -79.50 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.49 kcal Atomic # 16 Polarization: 40.68 SS G_CDS: -0.34 Total: 40.34 kcal Total: -79.56 0.11 -79.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049821673.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.476 kcal (2) G-P(sol) polarization free energy of solvation -79.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds