Wall clock time and date at job start Mon Mar 30 2020 04:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99898 * 2 1 4 4 H 1.48496 * 109.47323 * 270.00136 * 3 2 1 5 5 H 1.48496 * 109.47171 * 30.00052 * 3 2 1 6 6 H 1.48500 * 109.47073 * 150.00154 * 3 2 1 7 7 C 1.37873 * 119.99951 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99946 * 179.97438 * 7 2 1 9 9 S 1.76207 * 120.00179 * 359.97438 * 7 2 1 10 10 O 1.42105 * 104.27237 * 63.93453 * 9 7 2 11 11 O 1.42094 * 104.28040 * 296.07898 * 9 7 2 12 12 C 1.81400 * 104.45083 * 180.02562 * 9 7 2 13 13 C 1.50699 * 109.47206 * 179.97438 * 12 9 7 14 14 O 1.21280 * 119.99808 * 0.02562 * 13 12 9 15 15 N 1.34772 * 119.99949 * 179.97438 * 13 12 9 16 16 C 1.46923 * 120.63343 * 0.03442 * 15 13 12 17 17 C 1.53195 * 108.77575 * 233.58368 * 16 15 13 18 18 C 1.53046 * 109.30793 * 305.36150 * 17 16 15 19 19 C 1.53043 * 109.53700 * 61.36640 * 18 17 16 20 20 C 1.46931 * 120.62926 * 180.02562 * 15 13 12 21 21 H 0.97004 * 120.00383 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.46806 * 60.00157 * 12 9 7 23 23 H 1.09001 * 109.47297 * 300.00620 * 12 9 7 24 24 H 1.08996 * 109.59375 * 113.79430 * 16 15 13 25 25 H 1.09006 * 109.58686 * 353.36430 * 16 15 13 26 26 H 1.08990 * 109.49959 * 185.41234 * 17 16 15 27 27 H 1.08999 * 109.49609 * 65.30943 * 17 16 15 28 28 H 1.08998 * 109.45610 * 181.38442 * 18 17 16 29 29 H 1.08997 * 109.46079 * 301.34562 * 18 17 16 30 30 H 1.09000 * 109.49738 * 58.58741 * 19 18 17 31 31 H 1.09003 * 109.49388 * 178.64855 * 19 18 17 32 32 H 1.09001 * 109.58511 * 6.62918 * 20 15 13 33 33 H 1.08996 * 109.70113 * 246.27382 * 20 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 16 1.1235 -2.7200 -0.0005 10 8 0.4238 -2.7206 -1.2374 11 8 0.4245 -2.7212 1.2366 12 6 2.4185 -3.9903 -0.0005 13 6 1.7821 -5.3564 0.0001 14 8 0.5740 -5.4625 0.0000 15 7 2.5556 -6.4601 -0.0003 16 6 4.0205 -6.3476 -0.0006 17 6 4.5778 -7.1681 -1.1681 18 6 4.0576 -8.6042 -1.0711 19 6 2.5302 -8.6029 -1.1672 20 6 1.9498 -7.7987 -0.0003 21 1 -0.4851 0.8400 -0.0004 22 1 3.0376 -3.8779 0.8895 23 1 3.0377 -3.8779 -0.8905 24 1 4.4169 -6.7329 0.9388 25 1 4.3067 -5.3025 -0.1191 26 1 5.6667 -7.1719 -1.1231 27 1 4.2536 -6.7267 -2.1105 28 1 4.4723 -9.1964 -1.8868 29 1 4.3611 -9.0368 -0.1178 30 1 2.2254 -8.1480 -2.1097 31 1 2.1620 -9.6279 -1.1222 32 1 0.8698 -7.7110 -0.1184 33 1 2.1748 -8.3038 0.9390 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058254859.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:49 Heat of formation + Delta-G solvation = -158.819528 kcal Electronic energy + Delta-G solvation = -18216.916491 eV Core-core repulsion = 15174.871172 eV Total energy + Delta-G solvation = -3042.045319 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 261.087 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.35437 -38.54537 -37.18478 -36.13263 -35.06849 -34.19176 -32.46018 -30.81137 -28.23649 -26.25599 -24.16962 -22.24515 -20.88968 -19.94671 -19.05206 -18.23985 -17.61467 -17.11881 -17.03102 -16.04468 -15.84615 -15.75428 -15.40288 -15.04860 -14.88079 -14.31102 -14.17017 -13.89759 -13.50814 -13.35221 -13.24401 -12.95863 -12.37672 -12.31941 -12.24884 -12.22682 -11.92623 -11.73406 -11.53598 -11.43094 -11.18958 -11.18541 -10.70533 -9.80623 -8.68310 -7.44634 -0.14120 1.25915 1.37372 1.40652 1.55951 1.79424 2.23038 2.64846 3.01543 3.62851 3.70355 3.77537 3.86022 3.97646 3.98615 4.11265 4.27594 4.34143 4.51094 4.60397 4.67944 4.81395 4.89079 4.91544 5.05004 5.14465 5.22797 5.30002 5.45160 5.47280 5.90710 6.09108 6.80832 6.82376 8.29328 Molecular weight = 261.09amu Principal moments of inertia in cm(-1) A = 0.040098 B = 0.005600 C = 0.005168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.127037 B = 4998.816149 C = 5417.059752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.062 3.938 3 Si 0.998 3.002 4 H -0.254 1.254 5 H -0.269 1.269 6 H -0.237 1.237 7 C -1.028 5.028 8 H 0.136 0.864 9 S 2.533 3.467 10 O -1.023 7.023 11 O -1.022 7.022 12 C -0.642 4.642 13 C 0.528 3.472 14 O -0.592 6.592 15 N -0.597 5.597 16 C 0.086 3.914 17 C -0.136 4.136 18 C -0.117 4.117 19 C -0.131 4.131 20 C 0.097 3.903 21 H 0.295 0.705 22 H 0.191 0.809 23 H 0.189 0.811 24 H 0.098 0.902 25 H 0.101 0.899 26 H 0.106 0.894 27 H 0.056 0.944 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.049 0.951 31 H 0.095 0.905 32 H 0.064 0.936 33 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.162 -14.124 -0.919 21.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.151 4.151 3 Si 0.815 3.185 4 H -0.178 1.178 5 H -0.193 1.193 6 H -0.159 1.159 7 C -1.161 5.161 8 H 0.154 0.846 9 S 2.721 3.279 10 O -1.020 7.020 11 O -1.019 7.019 12 C -0.771 4.771 13 C 0.316 3.684 14 O -0.474 6.474 15 N -0.329 5.329 16 C -0.035 4.035 17 C -0.174 4.174 18 C -0.154 4.154 19 C -0.169 4.169 20 C -0.025 4.025 21 H 0.105 0.895 22 H 0.208 0.792 23 H 0.206 0.794 24 H 0.116 0.884 25 H 0.119 0.881 26 H 0.124 0.876 27 H 0.075 0.925 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.068 0.932 31 H 0.114 0.886 32 H 0.083 0.917 33 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 14.452 -14.327 -0.913 20.370 hybrid contribution 0.326 0.895 -0.052 0.954 sum 14.778 -13.432 -0.965 19.993 Atomic orbital electron populations 1.70120 1.09282 1.31961 1.40746 1.26212 0.95368 1.05807 0.87711 0.85035 0.79250 0.74115 0.80076 1.17825 1.19340 1.15947 1.30675 1.07336 1.11037 1.67096 0.84582 1.03081 0.75870 0.76251 0.72717 1.93267 1.73040 1.87904 1.47755 1.93265 1.73051 1.87905 1.47707 1.30723 1.22212 1.08390 1.15727 1.19882 0.86333 0.86538 0.75617 1.90801 1.16253 1.87512 1.52816 1.48134 1.08416 1.05045 1.71269 1.22317 0.76475 1.03534 1.01157 1.21979 1.02262 0.95686 0.97472 1.21542 0.93644 0.96557 1.03662 1.21918 0.97540 1.00608 0.96875 1.21871 0.98547 0.81284 1.00766 0.89523 0.79193 0.79397 0.88362 0.88067 0.87573 0.92530 0.90113 0.90109 0.93179 0.88607 0.91726 0.88926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -55.80 13.03 21.45 0.28 -55.52 16 2 C 0.06 3.47 5.46 84.65 0.46 3.94 16 3 Si 1.00 40.92 29.54 68.60 2.03 42.95 16 4 H -0.25 -9.80 7.11 99.48 0.71 -9.09 16 5 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 6 H -0.24 -8.64 7.11 99.48 0.71 -7.94 16 7 C -1.03 -55.78 9.32 67.73 0.63 -55.15 16 8 H 0.14 6.07 7.81 -2.91 -0.02 6.05 16 9 S 2.53 141.99 3.61 -56.49 -0.20 141.79 16 10 O -1.02 -66.19 17.85 -127.64 -2.28 -68.46 16 11 O -1.02 -66.08 17.85 -127.64 -2.28 -68.36 16 12 C -0.64 -23.43 4.81 71.24 0.34 -23.08 16 13 C 0.53 20.78 7.72 87.66 0.68 21.45 16 14 O -0.59 -29.97 15.28 -3.03 -0.05 -30.02 16 15 N -0.60 -16.43 2.97 -818.99 -2.43 -18.86 16 16 C 0.09 1.48 6.34 86.36 0.55 2.02 16 17 C -0.14 -1.79 6.08 30.67 0.19 -1.60 16 18 C -0.12 -1.40 5.88 30.62 0.18 -1.22 16 19 C -0.13 -2.27 6.08 30.66 0.19 -2.08 16 20 C 0.10 2.32 6.43 86.35 0.56 2.87 16 21 H 0.29 16.62 8.31 -92.71 -0.77 15.85 16 22 H 0.19 5.25 7.94 -2.39 -0.02 5.23 16 23 H 0.19 5.26 7.69 -2.39 -0.02 5.24 16 24 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.10 1.56 5.93 -2.38 -0.01 1.55 16 26 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.06 1.95 7.01 -2.39 -0.02 1.94 16 33 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -91.95 289.41 -0.06 -92.02 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: 1.10 Total: 17.32 kcal Atomic # 6 Polarization: -56.61 SS G_CDS: 3.77 Total: -52.84 kcal Atomic # 7 Polarization: -72.23 SS G_CDS: -2.15 Total: -74.38 kcal Atomic # 8 Polarization: -162.24 SS G_CDS: -4.60 Total: -166.84 kcal Atomic # 14 Polarization: 40.92 SS G_CDS: 2.03 Total: 42.95 kcal Atomic # 16 Polarization: 141.99 SS G_CDS: -0.20 Total: 141.79 kcal Total: -91.95 -0.06 -92.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058254859.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.804 kcal (2) G-P(sol) polarization free energy of solvation -91.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds