Wall clock time and date at job start Mon Mar 30 2020 04:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46492 * 109.47157 * 65.72532 * 3 2 1 5 5 C 1.34784 * 120.00217 * 180.02562 * 4 3 2 6 6 O 1.21552 * 119.99611 * 359.97438 * 5 4 3 7 7 C 1.47865 * 120.00304 * 179.97438 * 5 4 3 8 8 C 1.39665 * 120.09843 * 359.97438 * 7 5 4 9 9 C 1.38047 * 120.03832 * 180.02562 * 8 7 5 10 10 C 1.38176 * 120.23812 * 359.67600 * 9 8 7 11 11 C 1.39179 * 120.20540 * 0.60009 * 10 9 8 12 12 S 1.76194 * 120.02163 * 179.69520 * 11 10 9 13 13 C 1.76196 * 100.00182 * 265.25136 * 12 11 10 14 14 H 1.08000 * 120.00393 * 5.12593 * 13 12 11 15 15 C 1.38736 * 120.00006 * 185.12109 * 13 12 11 16 16 N 1.31616 * 119.99932 * 359.97438 * 15 13 12 17 17 Si 1.86808 * 119.99686 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47076 * 59.99906 * 17 15 13 19 19 H 1.48496 * 109.46794 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.46962 * 299.99839 * 17 15 13 21 21 C 1.38875 * 119.95687 * 359.42658 * 11 10 9 22 22 H 4.40635 * 5.51404 * 180.02562 * 4 1 2 23 23 H 1.09005 * 109.46789 * 305.72374 * 3 2 1 24 24 H 1.09002 * 109.46891 * 185.72391 * 3 2 1 25 25 H 0.96996 * 120.00373 * 359.97438 * 4 3 2 26 26 H 1.08002 * 119.98607 * 0.02562 * 8 7 5 27 27 H 1.07993 * 119.87788 * 179.97438 * 9 8 7 28 28 H 1.08004 * 119.89897 * 180.29644 * 10 9 8 29 29 H 0.97004 * 119.99833 * 179.97438 * 16 15 13 30 30 H 1.08000 * 120.12505 * 180.25503 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1346 -0.5669 -1.2590 5 6 4.4598 -0.6681 -1.4834 6 8 5.2495 -0.2879 -0.6411 7 6 4.9530 -1.2415 -2.7539 8 6 4.0474 -1.6795 -3.7229 9 6 4.5092 -2.2151 -4.9084 10 6 5.8669 -2.3144 -5.1450 11 6 6.7782 -1.8863 -4.1841 12 16 8.5085 -2.0226 -4.4875 13 6 8.8353 -3.5681 -3.7070 14 1 8.0213 -4.1524 -3.3040 15 6 10.1383 -4.0345 -3.6103 16 7 11.1303 -3.3228 -4.1019 17 14 10.4846 -5.6735 -2.7834 18 1 9.7694 -6.7544 -3.5082 19 1 11.9449 -5.9418 -2.8088 20 1 10.0148 -5.6266 -1.3755 21 6 6.3229 -1.3466 -2.9882 22 1 -1.0499 0.0001 -0.0003 23 1 3.0096 -0.5992 0.8344 24 1 3.0089 1.0234 0.1025 25 1 2.5045 -0.8707 -1.9310 26 1 2.9852 -1.5991 -3.5446 27 1 3.8067 -2.5533 -5.6557 28 1 6.2222 -2.7299 -6.0764 29 1 12.0414 -3.6488 -4.0339 30 1 7.0277 -1.0098 -2.2424 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079505591.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:52 Heat of formation + Delta-G solvation = 18.752864 kcal Electronic energy + Delta-G solvation = -15660.941903 eV Core-core repulsion = 12933.905621 eV Total energy + Delta-G solvation = -2727.036282 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 261.056 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.26741 -39.22784 -36.62593 -34.65555 -33.79382 -32.18584 -31.88403 -28.23773 -27.73855 -24.67490 -23.57966 -21.75192 -20.32396 -19.60744 -18.53209 -17.46811 -16.93489 -16.90838 -16.59640 -16.57708 -15.68989 -15.28083 -14.83599 -14.76159 -14.60235 -14.33009 -13.80579 -13.24869 -13.09713 -12.95927 -12.67319 -12.39584 -11.85231 -11.75647 -11.49942 -11.24161 -11.11084 -10.76328 -10.31664 -9.91996 -9.70780 -8.80907 -8.39253 -6.19551 -0.20651 0.24717 1.29039 1.35410 1.39154 1.45367 1.64493 1.75059 1.84105 2.23870 2.44724 2.78664 2.93823 3.32176 3.41516 3.63870 3.93596 4.02035 4.34187 4.44526 4.46110 4.51989 4.68634 4.91579 4.99426 5.16638 5.21330 5.31566 5.38044 5.49927 5.85072 6.15378 6.37195 6.56609 7.00919 7.03538 8.67654 Molecular weight = 261.06amu Principal moments of inertia in cm(-1) A = 0.027464 B = 0.004392 C = 0.004123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.256792 B = 6373.408418 C = 6788.902409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.251 4.251 3 C 0.230 3.770 4 N -0.708 5.708 5 C 0.565 3.435 6 O -0.577 6.577 7 C -0.157 4.157 8 C -0.063 4.063 9 C -0.120 4.120 10 C -0.062 4.062 11 C -0.129 4.129 12 S -0.094 6.094 13 C -0.538 4.538 14 H 0.068 0.932 15 C 0.020 3.980 16 N -0.906 5.906 17 Si 0.992 3.008 18 H -0.260 1.260 19 H -0.271 1.271 20 H -0.270 1.270 21 C -0.044 4.044 22 H 0.258 0.742 23 H 0.087 0.913 24 H 0.090 0.910 25 H 0.417 0.583 26 H 0.172 0.828 27 H 0.176 0.824 28 H 0.136 0.864 29 H 0.274 0.726 30 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.130 2.945 2.394 23.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.251 4.251 3 C 0.108 3.892 4 N -0.361 5.361 5 C 0.354 3.646 6 O -0.458 6.458 7 C -0.162 4.162 8 C -0.081 4.081 9 C -0.140 4.140 10 C -0.082 4.082 11 C -0.240 4.240 12 S 0.140 5.860 13 C -0.685 4.685 14 H 0.086 0.914 15 C -0.185 4.185 16 N -0.542 5.542 17 Si 0.813 3.187 18 H -0.185 1.185 19 H -0.196 1.196 20 H -0.195 1.195 21 C -0.066 4.066 22 H 0.274 0.726 23 H 0.105 0.895 24 H 0.108 0.892 25 H 0.256 0.744 26 H 0.189 0.811 27 H 0.194 0.806 28 H 0.154 0.846 29 H 0.083 0.917 30 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -21.593 3.953 2.412 22.084 hybrid contribution -0.189 -1.527 0.932 1.799 sum -21.782 2.426 3.344 22.170 Atomic orbital electron populations 1.25871 0.96576 0.97802 0.95284 1.22826 0.94190 1.03383 1.04736 1.18012 0.84398 1.00169 0.86636 1.45690 1.05912 1.64007 1.20505 1.18359 0.82455 0.77528 0.86250 1.90771 1.56664 1.50733 1.47618 1.19896 0.93708 1.06634 0.95976 1.21711 1.00100 0.94378 0.91949 1.21556 0.94578 0.99532 0.98296 1.22092 0.93705 0.94271 0.98175 1.22502 1.00476 1.03644 0.97413 1.83483 0.98402 1.30220 1.73873 1.23048 0.95947 1.04947 1.44605 0.91405 1.26010 0.94547 1.02352 0.95614 1.70100 1.00316 1.39618 1.44211 0.85103 0.77743 0.77213 0.78619 1.18457 1.19558 1.19545 1.21643 0.95087 0.94376 0.95479 0.72629 0.89495 0.89227 0.74430 0.81061 0.80624 0.84617 0.91667 0.87768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 19.25 74.32 1.43 -0.01 16 2 C -0.25 -3.92 13.46 31.13 0.42 -3.50 16 3 C 0.23 4.50 6.15 84.58 0.52 5.02 16 4 N -0.71 -15.06 5.49 -475.03 -2.61 -17.67 16 5 C 0.57 17.81 7.77 86.79 0.67 18.49 16 6 O -0.58 -23.38 16.34 -3.88 -0.06 -23.45 16 7 C -0.16 -5.12 5.87 -20.11 -0.12 -5.23 16 8 C -0.06 -1.44 9.54 22.57 0.22 -1.22 16 9 C -0.12 -2.88 10.02 22.21 0.22 -2.65 16 10 C -0.06 -2.12 9.79 22.48 0.22 -1.90 16 11 C -0.13 -5.71 5.45 22.65 0.12 -5.59 16 12 S -0.09 -5.19 21.40 -56.49 -1.21 -6.40 16 13 C -0.54 -31.79 9.46 67.94 0.64 -31.15 16 14 H 0.07 3.95 7.79 -2.91 -0.02 3.93 16 15 C 0.02 1.16 5.49 84.84 0.47 1.62 16 16 N -0.91 -54.99 13.22 21.64 0.29 -54.70 16 17 Si 0.99 44.79 29.55 68.60 2.03 46.82 16 18 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 19 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 20 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 21 C -0.04 -1.87 9.34 22.70 0.21 -1.66 16 22 H 0.26 0.45 7.80 -4.42 -0.03 0.42 16 23 H 0.09 1.80 8.14 -2.38 -0.02 1.78 16 24 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 25 H 0.42 6.07 6.48 -92.71 -0.60 5.47 16 26 H 0.17 2.08 6.40 -2.91 -0.02 2.06 16 27 H 0.18 2.52 8.06 -2.91 -0.02 2.50 16 28 H 0.14 4.48 8.06 -2.91 -0.02 4.46 16 29 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 30 H 0.10 5.06 7.65 -2.91 -0.02 5.03 16 Total: -1.00 -77.77 295.76 4.03 -73.75 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: 0.57 Total: 9.44 kcal Atomic # 6 Polarization: -32.81 SS G_CDS: 5.03 Total: -27.79 kcal Atomic # 7 Polarization: -70.05 SS G_CDS: -2.32 Total: -72.37 kcal Atomic # 8 Polarization: -23.38 SS G_CDS: -0.06 Total: -23.45 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Atomic # 16 Polarization: -5.19 SS G_CDS: -1.21 Total: -6.40 kcal Total: -77.77 4.03 -73.75 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079505591.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.499 kcal (2) G-P(sol) polarization free energy of solvation -77.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds