Wall clock time and date at job start Mon Mar 30 2020 04:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00408 * 2 1 4 4 H 1.48504 * 109.47015 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.47405 * 300.00170 * 3 2 1 6 6 H 1.48504 * 109.46824 * 59.99988 * 3 2 1 7 7 C 1.37882 * 119.99712 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00067 * 180.02562 * 7 2 1 9 9 S 1.76203 * 119.99830 * 0.02562 * 7 2 1 10 10 O 1.42092 * 106.40533 * 66.45972 * 9 7 2 11 11 O 1.42108 * 106.40075 * 293.54139 * 9 7 2 12 12 N 1.65605 * 107.21755 * 180.02562 * 9 7 2 13 13 C 1.46501 * 120.00082 * 64.99878 * 12 9 7 14 14 H 1.09005 * 110.34154 * 337.28606 * 13 12 9 15 15 C 1.51097 * 110.48413 * 99.63751 * 13 12 9 16 16 C 1.30528 * 111.10203 * 102.42154 * 15 13 12 17 17 C 1.51106 * 111.10324 * 0.02562 * 16 15 13 18 18 H 1.09002 * 110.38538 * 135.35683 * 17 16 15 19 19 C 1.50698 * 110.38545 * 257.62006 * 17 16 15 20 20 O 1.20830 * 119.99673 * 118.54585 * 19 17 16 21 21 O 1.34225 * 120.00226 * 298.54549 * 19 17 16 22 22 C 1.54627 * 110.38630 * 215.00150 * 13 12 9 23 23 H 0.97007 * 119.99286 * 359.97438 * 1 2 3 24 24 H 0.96999 * 119.99700 * 244.99571 * 12 9 7 25 25 H 1.07996 * 124.45390 * 282.44562 * 15 13 12 26 26 H 1.07997 * 124.44973 * 180.26405 * 16 15 13 27 27 H 0.96703 * 116.99862 * 179.97438 * 21 19 17 28 28 H 1.09002 * 111.04087 * 147.67402 * 22 13 12 29 29 H 1.09002 * 111.07318 * 23.75466 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7093 1.3462 0.0006 5 1 1.8906 2.3964 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0001 9 16 1.1234 -2.7200 -0.0019 10 8 0.4517 -2.7945 -1.2518 11 8 0.4507 -2.7960 1.2476 12 7 2.2481 -3.9355 -0.0016 13 6 3.1383 -4.1096 1.1489 14 1 3.2226 -3.1771 1.7072 15 6 2.6335 -5.2161 2.0454 16 6 3.3198 -6.3126 1.8704 17 6 4.3970 -6.1198 0.8285 18 1 5.3363 -6.5562 1.1682 19 6 3.9767 -6.7352 -0.4813 20 8 3.8554 -6.0417 -1.4633 21 8 3.7370 -8.0537 -0.5570 22 6 4.5335 -4.5865 0.6831 23 1 -0.4849 0.8402 0.0004 24 1 2.3174 -4.5323 -0.7631 25 1 1.8125 -5.1136 2.7395 26 1 3.1388 -7.2373 2.3981 27 1 3.4696 -8.4025 -1.4184 28 1 5.3169 -4.2001 1.3351 29 1 4.7173 -4.3064 -0.3541 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086088265.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:13 Heat of formation + Delta-G solvation = -163.967544 kcal Electronic energy + Delta-G solvation = -18087.794639 eV Core-core repulsion = 14909.692991 eV Total energy + Delta-G solvation = -3178.101648 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 261.055 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.70022 -38.24776 -36.05581 -35.11771 -33.88908 -33.12026 -32.65842 -29.27203 -27.22428 -26.09239 -23.02252 -20.08302 -19.17514 -19.04451 -17.99266 -17.43173 -16.81897 -16.49061 -15.88370 -15.10148 -14.90669 -14.73932 -13.96558 -13.53755 -13.24603 -12.41373 -12.23358 -11.97183 -11.74746 -11.53615 -11.44158 -11.25146 -11.21159 -11.13468 -10.71722 -10.56403 -10.24216 -10.17434 -10.13220 -9.23017 -9.11266 -9.01374 -8.49939 -6.67083 -5.28488 1.96772 2.31356 2.52288 3.07586 3.12875 3.16540 3.23492 4.09584 4.46765 4.60547 4.67249 4.85194 5.15043 5.18477 5.41884 5.49983 5.74528 5.79598 5.95862 6.04637 6.22998 6.45403 6.52751 6.58582 6.82123 6.96245 7.35597 7.84930 7.98806 8.06308 8.92222 10.27133 Molecular weight = 261.05amu Principal moments of inertia in cm(-1) A = 0.032599 B = 0.006574 C = 0.006416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.727356 B = 4258.143772 C = 4362.854686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.132 3.868 3 Si 0.921 3.079 4 H -0.262 1.262 5 H -0.272 1.272 6 H -0.271 1.271 7 C -1.020 5.020 8 H 0.103 0.897 9 S 2.712 3.288 10 O -1.007 7.007 11 O -1.006 7.006 12 N -1.124 6.124 13 C 0.171 3.829 14 H 0.105 0.895 15 C -0.134 4.134 16 C -0.173 4.173 17 C -0.059 4.059 18 H 0.115 0.885 19 C 0.486 3.514 20 O -0.505 6.505 21 O -0.517 6.517 22 C -0.126 4.126 23 H 0.290 0.710 24 H 0.406 0.594 25 H 0.140 0.860 26 H 0.135 0.865 27 H 0.408 0.592 28 H 0.095 0.905 29 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.257 -11.385 3.186 15.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.086 4.086 3 Si 0.745 3.255 4 H -0.186 1.186 5 H -0.197 1.197 6 H -0.197 1.197 7 C -1.153 5.153 8 H 0.122 0.878 9 S 2.812 3.188 10 O -0.998 6.998 11 O -0.996 6.996 12 N -0.878 5.878 13 C 0.063 3.937 14 H 0.123 0.877 15 C -0.154 4.154 16 C -0.193 4.193 17 C -0.078 4.078 18 H 0.133 0.867 19 C 0.328 3.672 20 O -0.392 6.392 21 O -0.328 6.328 22 C -0.165 4.165 23 H 0.100 0.900 24 H 0.239 0.761 25 H 0.158 0.842 26 H 0.153 0.847 27 H 0.266 0.734 28 H 0.113 0.887 29 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 9.197 -10.952 3.431 14.707 hybrid contribution 0.764 0.608 -0.901 1.328 sum 9.961 -10.344 2.530 14.581 Atomic orbital electron populations 1.69916 1.06802 1.30559 1.40259 1.24757 0.94451 1.00835 0.88509 0.86128 0.80463 0.80424 0.78495 1.18583 1.19669 1.19662 1.30599 1.06181 1.11834 1.66704 0.87824 1.00491 0.72176 0.73279 0.72842 1.93371 1.73158 1.87626 1.45628 1.93356 1.72845 1.87548 1.45884 1.56131 1.55177 1.50914 1.25540 1.20367 0.88428 0.98615 0.86293 0.87720 1.24131 0.98177 0.95688 0.97375 1.22911 0.97929 0.99326 0.99089 1.20851 1.00283 0.97291 0.89425 0.86724 1.23408 0.72957 0.79768 0.91053 1.90731 1.47887 1.62203 1.38366 1.84530 1.80593 1.25785 1.41922 1.22912 0.97802 0.90903 1.04875 0.89992 0.76150 0.84244 0.84743 0.73389 0.88669 0.87876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -25.14 13.19 55.43 0.73 -24.40 15 2 C 0.13 3.72 5.46 -17.82 -0.10 3.62 15 3 Si 0.92 20.67 29.54 -169.99 -5.02 15.65 15 4 H -0.26 -5.64 7.11 56.52 0.40 -5.23 15 5 H -0.27 -5.92 7.11 56.52 0.40 -5.52 15 6 H -0.27 -5.85 7.11 56.52 0.40 -5.45 15 7 C -1.02 -28.27 9.66 30.60 0.30 -27.97 15 8 H 0.10 2.61 7.81 -52.49 -0.41 2.20 15 9 S 2.71 73.56 4.94 -107.50 -0.53 73.03 15 10 O -1.01 -30.76 18.02 -57.17 -1.03 -31.79 15 11 O -1.01 -29.27 17.78 -57.17 -1.02 -30.29 15 12 N -1.12 -23.63 5.50 -4.98 -0.03 -23.66 15 13 C 0.17 2.93 3.43 -68.03 -0.23 2.70 15 14 H 0.10 1.82 7.95 -51.93 -0.41 1.40 15 15 C -0.13 -2.00 10.41 -35.70 -0.37 -2.37 15 16 C -0.17 -2.09 10.05 -35.70 -0.36 -2.45 15 17 C -0.06 -0.69 3.41 -91.88 -0.31 -1.00 15 18 H 0.11 0.97 8.14 -51.93 -0.42 0.55 15 19 C 0.49 6.35 7.54 36.00 0.27 6.62 15 20 O -0.50 -8.21 14.40 -18.75 -0.27 -8.48 15 21 O -0.52 -5.25 13.39 -39.24 -0.53 -5.77 15 22 C -0.13 -1.68 6.19 -25.03 -0.15 -1.83 15 23 H 0.29 7.71 8.31 -40.82 -0.34 7.37 15 24 H 0.41 8.28 6.84 -34.47 -0.24 8.04 15 25 H 0.14 2.10 8.06 -52.49 -0.42 1.68 15 26 H 0.13 1.32 8.06 -52.49 -0.42 0.89 15 27 H 0.41 2.55 9.10 45.56 0.41 2.96 15 28 H 0.09 0.98 8.14 -51.93 -0.42 0.56 15 29 H 0.10 1.52 6.84 -51.93 -0.36 1.16 15 LS Contribution 273.46 15.07 4.12 4.12 Total: -1.00 -37.31 273.46 -6.36 -43.67 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -1.82 Total: 10.61 kcal Atomic # 6 Polarization: -21.73 SS G_CDS: -0.96 Total: -22.69 kcal Atomic # 7 Polarization: -48.77 SS G_CDS: 0.70 Total: -48.07 kcal Atomic # 8 Polarization: -73.48 SS G_CDS: -2.84 Total: -76.33 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Atomic # 16 Polarization: 73.56 SS G_CDS: -0.53 Total: 73.03 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -37.31 -6.36 -43.67 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086088265.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.297 kcal (2) G-P(sol) polarization free energy of solvation -37.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds