Wall clock time and date at job start Mon Mar 30 2020 04:13:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00101 * 2 1 4 4 H 1.48507 * 109.46891 * 270.00338 * 3 2 1 5 5 H 1.48496 * 109.47304 * 30.00183 * 3 2 1 6 6 H 1.48501 * 109.47242 * 150.00442 * 3 2 1 7 7 C 1.37879 * 119.99712 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00133 * 359.97438 * 7 2 1 9 9 S 1.76207 * 119.99693 * 179.97438 * 7 2 1 10 10 O 1.42093 * 106.40139 * 66.45783 * 9 7 2 11 11 O 1.42099 * 106.39948 * 293.53624 * 9 7 2 12 12 N 1.65601 * 107.21710 * 179.97438 * 9 7 2 13 13 C 1.46501 * 119.99932 * 64.99737 * 12 9 7 14 14 H 1.08998 * 110.34421 * 22.71625 * 13 12 9 15 15 C 1.51104 * 110.38859 * 260.30486 * 13 12 9 16 16 C 1.30526 * 111.10288 * 224.75752 * 15 13 12 17 17 C 1.51107 * 111.10388 * 359.97438 * 16 15 13 18 18 H 1.09007 * 110.47992 * 135.30222 * 17 16 15 19 19 C 1.50697 * 110.38650 * 257.62701 * 17 16 15 20 20 O 1.20833 * 119.99747 * 115.30939 * 19 17 16 21 21 O 1.34230 * 120.00262 * 295.02561 * 19 17 16 22 22 C 1.54636 * 104.72609 * 16.44463 * 17 16 15 23 23 H 0.96997 * 120.00057 * 359.97438 * 1 2 3 24 24 H 0.96996 * 119.99720 * 245.00066 * 12 9 7 25 25 H 1.07999 * 124.44575 * 44.74988 * 15 13 12 26 26 H 1.07998 * 124.44970 * 180.02562 * 16 15 13 27 27 H 0.96699 * 116.99771 * 180.27188 * 21 19 17 28 28 H 1.08995 * 111.03745 * 93.39512 * 22 17 16 29 29 H 1.09005 * 111.03408 * 217.33283 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 16 3.7665 -1.1941 -0.0012 10 8 4.1682 -0.6499 1.2484 11 8 4.1672 -0.6495 -1.2510 12 7 4.2567 -2.7759 -0.0011 13 6 3.9609 -3.6345 -1.1506 14 1 3.7938 -3.0300 -2.0421 15 6 2.7555 -4.4999 -0.8649 16 6 2.9631 -5.7331 -1.2388 17 6 4.3413 -5.8957 -1.8367 18 1 4.8214 -6.7944 -1.4494 19 6 4.2578 -5.9528 -3.3403 20 8 4.7620 -5.0803 -4.0069 21 8 3.6282 -6.9759 -3.9392 22 6 5.1158 -4.6349 -1.3876 23 1 -0.4850 0.8400 0.0004 24 1 4.7396 -3.1339 0.7602 25 1 1.8423 -4.1446 -0.4109 26 1 2.2439 -6.5321 -1.1352 27 1 3.6040 -6.9712 -4.9058 28 1 5.6666 -4.8218 -0.4658 29 1 5.7823 -4.2839 -2.1755 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086088268.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:20 Heat of formation + Delta-G solvation = -149.669970 kcal Electronic energy + Delta-G solvation = -17892.698257 eV Core-core repulsion = 14715.216598 eV Total energy + Delta-G solvation = -3177.481659 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 261.055 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.69431 -38.31240 -36.10525 -35.60557 -34.42866 -33.23681 -32.98054 -29.32491 -27.13424 -26.39019 -23.11962 -20.27998 -19.46957 -18.83612 -18.02789 -17.55434 -16.99364 -16.68294 -16.47842 -15.30599 -15.07222 -14.43141 -13.96302 -13.44189 -13.19607 -12.94671 -12.70761 -12.25259 -12.02886 -11.78662 -11.49105 -11.43852 -11.34514 -11.07265 -10.79464 -10.69925 -10.61352 -10.48712 -9.83083 -9.27467 -9.20651 -9.04347 -8.66725 -6.80688 -5.34621 1.93003 2.11852 2.38029 3.07992 3.09393 3.19078 3.28016 3.96033 4.23380 4.52498 4.55775 4.61911 5.03859 5.14536 5.32938 5.37262 5.47244 5.60617 5.84719 5.91604 6.10654 6.29850 6.43146 6.53370 6.58740 6.82364 7.47238 7.71467 7.84668 8.19747 8.70546 10.31320 Molecular weight = 261.05amu Principal moments of inertia in cm(-1) A = 0.033254 B = 0.006405 C = 0.006126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.796790 B = 4370.682181 C = 4569.492488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.154 3.846 3 Si 0.801 3.199 4 H -0.246 1.246 5 H -0.255 1.255 6 H -0.220 1.220 7 C -1.015 5.015 8 H 0.123 0.877 9 S 2.671 3.329 10 O -1.008 7.008 11 O -1.010 7.010 12 N -1.113 6.113 13 C 0.170 3.830 14 H 0.112 0.888 15 C -0.133 4.133 16 C -0.179 4.179 17 C -0.057 4.057 18 H 0.116 0.884 19 C 0.487 3.513 20 O -0.508 6.508 21 O -0.516 6.516 22 C -0.119 4.119 23 H 0.280 0.720 24 H 0.406 0.594 25 H 0.145 0.855 26 H 0.137 0.863 27 H 0.408 0.592 28 H 0.092 0.908 29 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.042 -13.299 -3.274 14.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.066 4.066 3 Si 0.621 3.379 4 H -0.170 1.170 5 H -0.180 1.180 6 H -0.142 1.142 7 C -1.149 5.149 8 H 0.141 0.859 9 S 2.773 3.227 10 O -0.998 6.998 11 O -1.000 7.000 12 N -0.867 5.867 13 C 0.062 3.938 14 H 0.130 0.870 15 C -0.152 4.152 16 C -0.198 4.198 17 C -0.077 4.077 18 H 0.133 0.867 19 C 0.329 3.671 20 O -0.395 6.395 21 O -0.327 6.327 22 C -0.158 4.158 23 H 0.091 0.909 24 H 0.238 0.762 25 H 0.163 0.837 26 H 0.155 0.845 27 H 0.266 0.734 28 H 0.111 0.889 29 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 6.539 -12.127 -3.190 14.142 hybrid contribution -0.484 0.209 -0.331 0.622 sum 6.055 -11.917 -3.521 13.823 Atomic orbital electron populations 1.69980 1.06568 1.29050 1.39638 1.24416 0.94781 0.98806 0.88574 0.87863 0.83581 0.84558 0.81849 1.17005 1.17951 1.14230 1.30489 1.15507 1.02185 1.66755 0.85909 1.01474 0.77436 0.70478 0.73300 1.93475 1.85513 1.75830 1.45021 1.93420 1.85055 1.75955 1.45552 1.55537 1.73680 1.31146 1.26307 1.20577 0.91490 0.91885 0.89827 0.87010 1.24251 0.99825 0.94932 0.96228 1.22830 0.95967 0.98158 1.02844 1.20746 0.97743 1.02103 0.87059 0.86663 1.23366 0.73672 0.78181 0.91846 1.90747 1.44101 1.38323 1.66352 1.84534 1.71895 1.48046 1.28248 1.22857 0.97661 0.92185 1.03072 0.90914 0.76157 0.83712 0.84527 0.73372 0.88929 0.88293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.53 13.96 55.43 0.77 -22.76 15 2 C 0.15 4.38 5.47 -17.82 -0.10 4.28 15 3 Si 0.80 20.63 26.54 -169.99 -4.51 16.12 15 4 H -0.25 -6.23 7.11 56.52 0.40 -5.83 15 5 H -0.26 -6.04 7.11 56.52 0.40 -5.63 15 6 H -0.22 -5.78 5.61 56.52 0.32 -5.46 15 7 C -1.01 -27.71 10.26 30.60 0.31 -27.40 15 8 H 0.12 3.29 6.86 -52.49 -0.36 2.93 15 9 S 2.67 65.99 4.21 -107.50 -0.45 65.54 15 10 O -1.01 -26.79 16.02 -57.17 -0.92 -27.71 15 11 O -1.01 -27.15 16.21 -57.17 -0.93 -28.08 15 12 N -1.11 -20.63 5.54 -4.98 -0.03 -20.66 15 13 C 0.17 2.88 3.56 -68.03 -0.24 2.64 15 14 H 0.11 2.16 7.56 -51.93 -0.39 1.77 15 15 C -0.13 -2.02 10.37 -35.70 -0.37 -2.39 15 16 C -0.18 -2.18 10.07 -35.69 -0.36 -2.54 15 17 C -0.06 -0.64 3.40 -91.87 -0.31 -0.96 15 18 H 0.12 0.95 8.14 -51.92 -0.42 0.53 15 19 C 0.49 6.08 7.64 36.00 0.27 6.36 15 20 O -0.51 -8.04 16.22 -18.76 -0.30 -8.35 15 21 O -0.52 -4.93 13.42 -39.26 -0.53 -5.46 15 22 C -0.12 -1.55 6.21 -25.02 -0.16 -1.70 15 23 H 0.28 7.30 8.31 -40.82 -0.34 6.96 15 24 H 0.41 6.24 8.70 -34.47 -0.30 5.94 15 25 H 0.15 2.36 6.91 -52.49 -0.36 1.99 15 26 H 0.14 1.38 8.06 -52.49 -0.42 0.96 15 27 H 0.41 2.24 9.10 45.56 0.41 2.65 15 28 H 0.09 0.98 7.90 -51.93 -0.41 0.57 15 29 H 0.10 1.36 6.95 -51.93 -0.36 1.00 15 LS Contribution 267.40 15.07 4.03 4.03 Total: -1.00 -35.01 267.40 -5.65 -40.66 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -1.84 Total: 8.38 kcal Atomic # 6 Polarization: -20.76 SS G_CDS: -0.95 Total: -21.71 kcal Atomic # 7 Polarization: -44.16 SS G_CDS: 0.75 Total: -43.42 kcal Atomic # 8 Polarization: -66.92 SS G_CDS: -2.67 Total: -69.59 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -4.51 Total: 16.12 kcal Atomic # 16 Polarization: 65.99 SS G_CDS: -0.45 Total: 65.54 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -35.01 -5.65 -40.66 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086088268.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.011 kcal (2) G-P(sol) polarization free energy of solvation -35.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds