Wall clock time and date at job start Mon Mar 30 2020 04:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00101 * 2 1 4 4 H 1.48507 * 109.46891 * 270.00338 * 3 2 1 5 5 H 1.48496 * 109.47304 * 30.00183 * 3 2 1 6 6 H 1.48501 * 109.47242 * 150.00442 * 3 2 1 7 7 C 1.37879 * 119.99712 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00133 * 359.97438 * 7 2 1 9 9 S 1.76207 * 119.99693 * 179.97438 * 7 2 1 10 10 O 1.42093 * 106.40139 * 66.45783 * 9 7 2 11 11 O 1.42099 * 106.39948 * 293.53624 * 9 7 2 12 12 N 1.65601 * 107.21710 * 179.97438 * 9 7 2 13 13 C 1.46501 * 119.99932 * 64.99737 * 12 9 7 14 14 H 1.08998 * 110.34421 * 22.71625 * 13 12 9 15 15 C 1.51104 * 110.38859 * 260.30486 * 13 12 9 16 16 C 1.30526 * 111.10288 * 224.75752 * 15 13 12 17 17 C 1.51107 * 111.10388 * 359.97438 * 16 15 13 18 18 H 1.09007 * 110.47992 * 135.30222 * 17 16 15 19 19 C 1.50697 * 110.38650 * 257.62701 * 17 16 15 20 20 O 1.20833 * 119.99747 * 115.30939 * 19 17 16 21 21 O 1.34230 * 120.00262 * 295.02561 * 19 17 16 22 22 C 1.54636 * 104.72609 * 16.44463 * 17 16 15 23 23 H 0.96997 * 120.00057 * 359.97438 * 1 2 3 24 24 H 0.96996 * 119.99720 * 245.00066 * 12 9 7 25 25 H 1.07999 * 124.44575 * 44.74988 * 15 13 12 26 26 H 1.07998 * 124.44970 * 180.02562 * 16 15 13 27 27 H 0.96699 * 116.99771 * 180.27188 * 21 19 17 28 28 H 1.08995 * 111.03745 * 93.39512 * 22 17 16 29 29 H 1.09005 * 111.03408 * 217.33283 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 16 3.7665 -1.1941 -0.0012 10 8 4.1682 -0.6499 1.2484 11 8 4.1672 -0.6495 -1.2510 12 7 4.2567 -2.7759 -0.0011 13 6 3.9609 -3.6345 -1.1506 14 1 3.7938 -3.0300 -2.0421 15 6 2.7555 -4.4999 -0.8649 16 6 2.9631 -5.7331 -1.2388 17 6 4.3413 -5.8957 -1.8367 18 1 4.8214 -6.7944 -1.4494 19 6 4.2578 -5.9528 -3.3403 20 8 4.7620 -5.0803 -4.0069 21 8 3.6282 -6.9759 -3.9392 22 6 5.1158 -4.6349 -1.3876 23 1 -0.4850 0.8400 0.0004 24 1 4.7396 -3.1339 0.7602 25 1 1.8423 -4.1446 -0.4109 26 1 2.2439 -6.5321 -1.1352 27 1 3.6040 -6.9712 -4.9058 28 1 5.6666 -4.8218 -0.4658 29 1 5.7823 -4.2839 -2.1755 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086088268.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:19 Heat of formation + Delta-G solvation = -179.626837 kcal Electronic energy + Delta-G solvation = -17893.997284 eV Core-core repulsion = 14715.216598 eV Total energy + Delta-G solvation = -3178.780686 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 261.055 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.68746 -39.40463 -37.67158 -37.03276 -36.50765 -35.20131 -34.57547 -30.36857 -28.57722 -28.28408 -24.19114 -21.38118 -21.18698 -20.10041 -19.58740 -18.88015 -18.69214 -17.93604 -17.73918 -17.10159 -16.40755 -15.98529 -15.64930 -15.19597 -14.97494 -14.45787 -14.10287 -13.56767 -13.46287 -13.20459 -12.95340 -12.82344 -12.71193 -12.58041 -12.55391 -12.46497 -12.22989 -11.81677 -11.75084 -11.33931 -11.17930 -10.37614 -10.09720 -8.96091 -7.50759 0.13020 0.98814 1.04637 1.13614 1.20973 1.35248 1.88964 2.25509 2.42224 2.57540 3.30818 3.43690 3.48637 4.06029 4.14753 4.17774 4.33195 4.42506 4.56962 4.76833 4.86252 5.10521 5.22624 5.39328 5.43358 5.66302 5.73510 6.05650 6.34044 6.55182 7.02694 8.20957 Molecular weight = 261.05amu Principal moments of inertia in cm(-1) A = 0.033254 B = 0.006405 C = 0.006126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.796790 B = 4370.682181 C = 4569.492488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.111 3.889 3 Si 0.821 3.179 4 H -0.243 1.243 5 H -0.219 1.219 6 H -0.230 1.230 7 C -1.034 5.034 8 H 0.116 0.884 9 S 2.691 3.309 10 O -1.028 7.028 11 O -1.035 7.035 12 N -1.096 6.096 13 C 0.158 3.842 14 H 0.076 0.924 15 C -0.176 4.176 16 C -0.134 4.134 17 C -0.056 4.056 18 H 0.163 0.837 19 C 0.491 3.509 20 O -0.550 6.550 21 O -0.505 6.505 22 C -0.114 4.114 23 H 0.290 0.710 24 H 0.424 0.576 25 H 0.125 0.875 26 H 0.167 0.833 27 H 0.426 0.574 28 H 0.123 0.877 29 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.808 -15.329 -3.123 17.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C -0.106 4.106 3 Si 0.638 3.362 4 H -0.167 1.167 5 H -0.141 1.141 6 H -0.152 1.152 7 C -1.167 5.167 8 H 0.134 0.866 9 S 2.792 3.208 10 O -1.018 7.018 11 O -1.025 7.025 12 N -0.855 5.855 13 C 0.051 3.949 14 H 0.094 0.906 15 C -0.196 4.196 16 C -0.153 4.153 17 C -0.075 4.075 18 H 0.180 0.820 19 C 0.334 3.666 20 O -0.440 6.440 21 O -0.318 6.318 22 C -0.153 4.153 23 H 0.101 0.899 24 H 0.260 0.740 25 H 0.143 0.857 26 H 0.185 0.815 27 H 0.288 0.712 28 H 0.142 0.858 29 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 7.268 -14.170 -3.037 16.212 hybrid contribution -0.731 0.653 -0.447 1.078 sum 6.537 -13.516 -3.484 15.413 Atomic orbital electron populations 1.69999 1.07291 1.30358 1.40544 1.25099 0.95583 1.01221 0.88694 0.87553 0.82997 0.83281 0.82351 1.16709 1.14135 1.15204 1.30991 1.17659 1.01971 1.66047 0.86623 1.00642 0.76069 0.71853 0.72274 1.93436 1.85288 1.77497 1.45605 1.93385 1.84891 1.77622 1.46583 1.54976 1.73327 1.29438 1.27801 1.20788 0.94405 0.92101 0.87592 0.90601 1.23969 0.99088 0.96137 1.00381 1.23151 0.96331 0.97231 0.98568 1.20861 0.97094 1.03030 0.86508 0.81991 1.23523 0.72955 0.77854 0.92239 1.90751 1.46033 1.39937 1.67295 1.84484 1.70755 1.46548 1.30057 1.22866 0.96386 0.91722 1.04308 0.89905 0.74035 0.85674 0.81535 0.71197 0.85842 0.89276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -49.22 13.96 21.45 0.30 -48.92 15 2 C 0.11 6.39 5.47 84.66 0.46 6.85 15 3 Si 0.82 41.62 26.54 68.60 1.82 43.44 15 4 H -0.24 -12.14 7.11 99.48 0.71 -11.43 15 5 H -0.22 -9.78 7.11 99.48 0.71 -9.07 15 6 H -0.23 -11.96 5.61 99.48 0.56 -11.40 15 7 C -1.03 -57.77 10.26 67.73 0.69 -57.07 15 8 H 0.12 6.44 6.86 -2.91 -0.02 6.42 15 9 S 2.69 134.47 4.21 -56.49 -0.24 134.24 15 10 O -1.03 -54.71 16.02 -128.00 -2.05 -56.76 15 11 O -1.04 -56.62 16.21 -128.00 -2.08 -58.70 15 12 N -1.10 -40.32 5.54 -169.66 -0.94 -41.26 15 13 C 0.16 5.31 3.56 44.93 0.16 5.47 15 14 H 0.08 3.06 7.56 -2.39 -0.02 3.04 15 15 C -0.18 -5.24 10.37 26.26 0.27 -4.96 15 16 C -0.13 -2.83 10.07 26.26 0.26 -2.57 15 17 C -0.06 -1.05 3.40 -11.60 -0.04 -1.09 15 18 H 0.16 1.69 8.14 -2.38 -0.02 1.67 15 19 C 0.49 10.95 7.64 71.23 0.54 11.49 15 20 O -0.55 -16.87 16.22 21.94 0.36 -16.51 15 21 O -0.51 -7.91 13.42 -51.41 -0.69 -8.60 15 22 C -0.11 -2.71 6.21 31.70 0.20 -2.51 15 23 H 0.29 15.17 8.31 -92.71 -0.77 14.40 15 24 H 0.42 12.45 8.70 -96.75 -0.84 11.61 15 25 H 0.13 4.19 6.91 -2.91 -0.02 4.17 15 26 H 0.17 2.57 8.06 -2.91 -0.02 2.55 15 27 H 0.43 3.42 9.10 -74.06 -0.67 2.74 15 28 H 0.12 2.15 7.90 -2.39 -0.02 2.13 15 29 H 0.09 2.34 6.95 -2.38 -0.02 2.32 15 Total: -1.00 -76.89 267.40 -1.41 -78.30 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: -0.45 Total: 19.16 kcal Atomic # 6 Polarization: -46.94 SS G_CDS: 2.56 Total: -44.39 kcal Atomic # 7 Polarization: -89.54 SS G_CDS: -0.64 Total: -90.18 kcal Atomic # 8 Polarization: -136.11 SS G_CDS: -4.46 Total: -140.57 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 1.82 Total: 43.44 kcal Atomic # 16 Polarization: 134.47 SS G_CDS: -0.24 Total: 134.24 kcal Total: -76.89 -1.41 -78.30 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086088268.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.323 kcal (2) G-P(sol) polarization free energy of solvation -76.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds