Wall clock time and date at job start Mon Mar 30 2020 05:11:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.20762 * 119.99985 * 2 1 4 4 C 1.50691 * 120.00098 * 180.02562 * 2 1 3 5 5 C 1.52999 * 109.47394 * 174.18152 * 4 2 1 6 6 H 1.09000 * 109.88018 * 55.39441 * 5 4 2 7 7 C 1.54329 * 109.87971 * 294.37974 * 5 4 2 8 8 C 1.55153 * 102.94225 * 218.23673 * 7 5 4 9 9 C 1.54912 * 101.58372 * 35.50279 * 8 7 5 10 10 N 1.47292 * 110.00189 * 176.46082 * 5 4 2 11 11 S 1.65601 * 125.79123 * 298.42228 * 10 5 4 12 12 O 1.42100 * 106.39982 * 23.41023 * 11 10 5 13 13 O 1.42103 * 106.39898 * 156.33070 * 11 10 5 14 14 C 1.76203 * 107.21720 * 269.86987 * 11 10 5 15 15 H 1.07997 * 120.00189 * 359.97438 * 14 11 10 16 16 C 1.37881 * 119.99801 * 180.02562 * 14 11 10 17 17 N 1.31507 * 120.00131 * 180.02562 * 16 14 11 18 18 Si 1.86808 * 119.99837 * 359.97438 * 16 14 11 19 19 H 1.48492 * 109.46766 * 90.00124 * 18 16 14 20 20 H 1.48496 * 109.46808 * 210.00095 * 18 16 14 21 21 H 1.48497 * 109.47080 * 330.00232 * 18 16 14 22 22 H 1.09000 * 109.47005 * 270.00169 * 1 2 3 23 23 H 1.09006 * 109.46983 * 29.99598 * 1 2 3 24 24 H 1.08990 * 109.47453 * 149.99681 * 1 2 3 25 25 H 1.08995 * 109.47656 * 54.17218 * 4 2 1 26 26 H 1.09006 * 109.47031 * 294.17577 * 4 2 1 27 27 H 1.09000 * 110.72089 * 99.86992 * 7 5 4 28 28 H 1.09006 * 110.71913 * 336.59757 * 7 5 4 29 29 H 1.09001 * 111.00447 * 277.42654 * 8 7 5 30 30 H 1.09000 * 111.03877 * 153.59040 * 8 7 5 31 31 H 1.08993 * 110.36854 * 81.82730 * 9 8 7 32 32 H 1.09003 * 110.36496 * 204.04327 * 9 8 7 33 33 H 0.96999 * 120.00234 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3050 -0.0006 5 6 3.7583 -1.0291 -0.1467 6 1 4.0880 -0.3480 0.6379 7 6 4.0456 -0.4124 -1.5319 8 6 5.3899 -1.0742 -1.9348 9 6 5.2293 -2.4940 -1.3364 10 7 4.5134 -2.2910 -0.0637 11 16 4.5533 -3.3119 1.2395 12 8 3.3670 -3.0626 1.9810 13 8 4.8990 -4.5943 0.7342 14 6 5.8951 -2.8014 2.2611 15 1 6.5038 -1.9576 1.9715 16 6 6.1687 -3.4799 3.4299 17 7 7.1699 -3.0986 4.1926 18 14 5.1164 -4.9399 3.9305 19 1 5.6954 -6.1846 3.3643 20 1 5.0808 -5.0396 5.4117 21 1 3.7365 -4.7560 3.4134 22 1 -0.3633 0.0000 1.0277 23 1 -0.3633 0.8901 -0.5138 24 1 -0.3634 -0.8899 -0.5138 25 1 1.9213 -1.9201 -0.8340 26 1 2.0777 -1.8305 0.9368 27 1 4.1555 0.6694 -1.4572 28 1 3.2596 -0.6733 -2.2407 29 1 6.2332 -0.5526 -1.4824 30 1 5.4956 -1.1168 -3.0189 31 1 4.6425 -3.1235 -2.0054 32 1 6.2063 -2.9419 -1.1549 33 1 7.3626 -3.5762 5.0146 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086497131.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:11:40 Heat of formation + Delta-G solvation = -119.114717 kcal Electronic energy + Delta-G solvation = -18682.592977 eV Core-core repulsion = 15642.269388 eV Total energy + Delta-G solvation = -3040.323589 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 261.087 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.62877 -37.71547 -35.73129 -34.49335 -33.03837 -31.74539 -30.38410 -29.77805 -26.40391 -25.73293 -21.65093 -20.98791 -19.36362 -18.68651 -17.37413 -16.87198 -16.19303 -15.22296 -15.13836 -15.00917 -14.68617 -14.03301 -13.56735 -13.35486 -13.15784 -12.93397 -12.76653 -12.47396 -12.21655 -11.92097 -11.72933 -11.41104 -11.29492 -10.89165 -10.80061 -10.66858 -10.58773 -10.46508 -10.36867 -9.83052 -9.48296 -9.21912 -9.14668 -8.23227 -6.80759 -5.34360 1.94811 2.13461 3.05141 3.15589 3.23430 3.93085 4.01132 4.41293 4.56704 4.84628 4.92216 5.06229 5.12698 5.34275 5.38324 5.41926 5.54891 5.61618 5.71684 5.83917 5.88224 5.97124 6.05897 6.13923 6.15396 6.36503 6.43359 6.54660 6.77970 7.21639 7.48643 7.67146 8.23094 8.69868 10.31903 Molecular weight = 261.09amu Principal moments of inertia in cm(-1) A = 0.024458 B = 0.008157 C = 0.007203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.525520 B = 3431.974870 C = 3886.508264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.362 3.638 3 O -0.462 6.462 4 C -0.210 4.210 5 C 0.166 3.834 6 H 0.081 0.919 7 C -0.121 4.121 8 C -0.132 4.132 9 C 0.125 3.875 10 N -1.009 6.009 11 S 2.690 3.310 12 O -1.004 7.004 13 O -1.006 7.006 14 C -1.016 5.016 15 H 0.121 0.879 16 C 0.152 3.848 17 N -0.823 5.823 18 Si 0.801 3.199 19 H -0.247 1.247 20 H -0.254 1.254 21 H -0.219 1.219 22 H 0.095 0.905 23 H 0.081 0.919 24 H 0.083 0.917 25 H 0.097 0.903 26 H 0.137 0.863 27 H 0.081 0.919 28 H 0.067 0.933 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.059 0.941 32 H 0.076 0.924 33 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.944 3.791 -10.264 14.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C 0.238 3.762 3 O -0.336 6.336 4 C -0.249 4.249 5 C 0.059 3.941 6 H 0.099 0.901 7 C -0.160 4.160 8 C -0.171 4.171 9 C -0.001 4.001 10 N -0.844 5.844 11 S 2.795 3.205 12 O -0.995 6.995 13 O -0.996 6.996 14 C -1.151 5.151 15 H 0.139 0.861 16 C -0.067 4.067 17 N -0.452 5.452 18 Si 0.621 3.379 19 H -0.170 1.170 20 H -0.178 1.178 21 H -0.141 1.141 22 H 0.114 0.886 23 H 0.100 0.900 24 H 0.102 0.898 25 H 0.115 0.885 26 H 0.154 0.846 27 H 0.100 0.900 28 H 0.085 0.915 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.077 0.923 32 H 0.094 0.906 33 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -9.103 3.551 -9.910 13.917 hybrid contribution 0.228 -0.355 0.638 0.765 sum -8.875 3.196 -9.272 13.227 Atomic orbital electron populations 1.22289 0.94805 1.04298 1.04727 1.24503 0.91765 0.90151 0.69758 1.90380 1.71960 1.35137 1.36155 1.23023 0.96553 0.98046 1.07243 1.20980 0.88978 0.85417 0.98718 0.90064 1.22675 0.97290 1.00699 0.95288 1.22807 0.97991 0.95935 1.00367 1.21826 0.96736 0.96644 0.84900 1.58746 1.60600 1.36306 1.28788 1.00967 0.75767 0.71933 0.71865 1.93380 1.50205 1.85523 1.70380 1.93408 1.85971 1.39798 1.80460 1.30538 1.35229 1.28781 1.20503 0.86096 1.24446 0.93205 0.95249 0.93816 1.69988 1.25270 1.37854 1.12059 0.87880 0.84150 0.84065 0.81837 1.17032 1.17842 1.14083 0.88622 0.90013 0.89813 0.88528 0.84593 0.89992 0.91463 0.90540 0.90602 0.92251 0.90561 0.90895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.96 10.25 36.01 0.37 -1.59 16 2 C 0.36 4.98 6.97 -29.04 -0.20 4.77 16 3 O -0.46 -7.58 15.67 6.00 0.09 -7.49 16 4 C -0.21 -3.23 5.08 -27.89 -0.14 -3.37 16 5 C 0.17 2.88 2.74 -66.80 -0.18 2.70 16 6 H 0.08 1.55 7.90 -51.93 -0.41 1.14 16 7 C -0.12 -1.67 5.48 -24.90 -0.14 -1.80 16 8 C -0.13 -1.75 7.08 -24.58 -0.17 -1.93 16 9 C 0.12 2.05 6.98 -2.53 -0.02 2.03 16 10 N -1.01 -20.03 3.41 -104.23 -0.36 -20.38 16 11 S 2.69 67.17 4.40 -107.50 -0.47 66.70 16 12 O -1.00 -25.68 13.15 -57.17 -0.75 -26.43 16 13 O -1.01 -26.78 16.42 -57.17 -0.94 -27.72 16 14 C -1.02 -28.80 10.29 30.60 0.31 -28.48 16 15 H 0.12 3.51 8.06 -52.49 -0.42 3.09 16 16 C 0.15 4.42 5.47 -17.82 -0.10 4.32 16 17 N -0.82 -24.03 13.96 55.43 0.77 -23.25 16 18 Si 0.80 20.52 26.54 -169.99 -4.51 16.01 16 19 H -0.25 -6.18 7.11 56.52 0.40 -5.78 16 20 H -0.25 -5.98 7.11 56.52 0.40 -5.58 16 21 H -0.22 -5.60 5.61 56.52 0.32 -5.29 16 22 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 23 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 24 H 0.08 0.64 8.12 -51.93 -0.42 0.22 16 25 H 0.10 1.24 8.06 -51.93 -0.42 0.82 16 26 H 0.14 2.40 5.62 -51.93 -0.29 2.11 16 27 H 0.08 1.12 7.75 -51.93 -0.40 0.71 16 28 H 0.07 0.80 7.79 -51.93 -0.40 0.40 16 29 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.28 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 284.18 15.07 4.28 4.28 Total: -1.00 -33.05 284.18 -6.68 -39.73 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -4.53 Total: 1.91 kcal Atomic # 6 Polarization: -23.09 SS G_CDS: -0.27 Total: -23.36 kcal Atomic # 7 Polarization: -44.05 SS G_CDS: 0.42 Total: -43.64 kcal Atomic # 8 Polarization: -60.04 SS G_CDS: -1.60 Total: -61.64 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -4.51 Total: 16.01 kcal Atomic # 16 Polarization: 67.17 SS G_CDS: -0.47 Total: 66.70 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -33.05 -6.68 -39.73 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086497131.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.384 kcal (2) G-P(sol) polarization free energy of solvation -33.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds