Wall clock time and date at job start Mon Mar 30 2020 05:11:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.20762 * 119.99985 * 2 1 4 4 C 1.50691 * 120.00098 * 180.02562 * 2 1 3 5 5 C 1.52999 * 109.47394 * 174.18152 * 4 2 1 6 6 H 1.09000 * 109.88018 * 55.39441 * 5 4 2 7 7 C 1.54329 * 109.87971 * 294.37974 * 5 4 2 8 8 C 1.55153 * 102.94225 * 218.23673 * 7 5 4 9 9 C 1.54912 * 101.58372 * 35.50279 * 8 7 5 10 10 N 1.47292 * 110.00189 * 176.46082 * 5 4 2 11 11 S 1.65601 * 125.79123 * 298.42228 * 10 5 4 12 12 O 1.42100 * 106.39982 * 23.41023 * 11 10 5 13 13 O 1.42103 * 106.39898 * 156.33070 * 11 10 5 14 14 C 1.76203 * 107.21720 * 269.86987 * 11 10 5 15 15 H 1.07997 * 120.00189 * 359.97438 * 14 11 10 16 16 C 1.37881 * 119.99801 * 180.02562 * 14 11 10 17 17 N 1.31507 * 120.00131 * 180.02562 * 16 14 11 18 18 Si 1.86808 * 119.99837 * 359.97438 * 16 14 11 19 19 H 1.48492 * 109.46766 * 90.00124 * 18 16 14 20 20 H 1.48496 * 109.46808 * 210.00095 * 18 16 14 21 21 H 1.48497 * 109.47080 * 330.00232 * 18 16 14 22 22 H 1.09000 * 109.47005 * 270.00169 * 1 2 3 23 23 H 1.09006 * 109.46983 * 29.99598 * 1 2 3 24 24 H 1.08990 * 109.47453 * 149.99681 * 1 2 3 25 25 H 1.08995 * 109.47656 * 54.17218 * 4 2 1 26 26 H 1.09006 * 109.47031 * 294.17577 * 4 2 1 27 27 H 1.09000 * 110.72089 * 99.86992 * 7 5 4 28 28 H 1.09006 * 110.71913 * 336.59757 * 7 5 4 29 29 H 1.09001 * 111.00447 * 277.42654 * 8 7 5 30 30 H 1.09000 * 111.03877 * 153.59040 * 8 7 5 31 31 H 1.08993 * 110.36854 * 81.82730 * 9 8 7 32 32 H 1.09003 * 110.36496 * 204.04327 * 9 8 7 33 33 H 0.96999 * 120.00234 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3050 -0.0006 5 6 3.7583 -1.0291 -0.1467 6 1 4.0880 -0.3480 0.6379 7 6 4.0456 -0.4124 -1.5319 8 6 5.3899 -1.0742 -1.9348 9 6 5.2293 -2.4940 -1.3364 10 7 4.5134 -2.2910 -0.0637 11 16 4.5533 -3.3119 1.2395 12 8 3.3670 -3.0626 1.9810 13 8 4.8990 -4.5943 0.7342 14 6 5.8951 -2.8014 2.2611 15 1 6.5038 -1.9576 1.9715 16 6 6.1687 -3.4799 3.4299 17 7 7.1699 -3.0986 4.1926 18 14 5.1164 -4.9399 3.9305 19 1 5.6954 -6.1846 3.3643 20 1 5.0808 -5.0396 5.4117 21 1 3.7365 -4.7560 3.4134 22 1 -0.3633 0.0000 1.0277 23 1 -0.3633 0.8901 -0.5138 24 1 -0.3634 -0.8899 -0.5138 25 1 1.9213 -1.9201 -0.8340 26 1 2.0777 -1.8305 0.9368 27 1 4.1555 0.6694 -1.4572 28 1 3.2596 -0.6733 -2.2407 29 1 6.2332 -0.5526 -1.4824 30 1 5.4956 -1.1168 -3.0189 31 1 4.6425 -3.1235 -2.0054 32 1 6.2063 -2.9419 -1.1549 33 1 7.3626 -3.5762 5.0146 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086497131.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:11:40 Heat of formation + Delta-G solvation = -144.147408 kcal Electronic energy + Delta-G solvation = -18683.678476 eV Core-core repulsion = 15642.269388 eV Total energy + Delta-G solvation = -3041.409088 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 261.087 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.80999 -38.99166 -37.75805 -36.54134 -35.23082 -32.91772 -31.75267 -30.74687 -28.59617 -26.89804 -23.06448 -22.18408 -20.67591 -20.49225 -19.24263 -18.66900 -17.64758 -17.04200 -16.35201 -16.29615 -16.12992 -15.50963 -15.41087 -15.06305 -14.82956 -14.39824 -14.17653 -13.61215 -13.48457 -13.24915 -13.05646 -12.94865 -12.90529 -12.72621 -12.63902 -12.52816 -12.00296 -11.87437 -11.59433 -11.54315 -11.36386 -11.21280 -10.64612 -9.78790 -9.00223 -7.57437 0.04024 1.01747 1.07095 1.11761 1.17912 1.85762 2.37597 2.39268 3.23802 3.30626 3.59725 3.67739 3.88468 4.15743 4.21566 4.29003 4.42015 4.52634 4.65094 4.72295 4.74597 4.86513 4.99683 5.02479 5.09119 5.16462 5.21618 5.27513 5.38093 5.45206 5.69385 5.96463 6.48950 6.61700 8.18314 Molecular weight = 261.09amu Principal moments of inertia in cm(-1) A = 0.024458 B = 0.008157 C = 0.007203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.525520 B = 3431.974870 C = 3886.508264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.366 3.634 3 O -0.495 6.495 4 C -0.214 4.214 5 C 0.152 3.848 6 H 0.049 0.951 7 C -0.110 4.110 8 C -0.122 4.122 9 C 0.109 3.891 10 N -1.011 6.011 11 S 2.715 3.285 12 O -1.013 7.013 13 O -1.023 7.023 14 C -1.047 5.047 15 H 0.095 0.905 16 C 0.104 3.896 17 N -0.857 5.857 18 Si 0.828 3.172 19 H -0.238 1.238 20 H -0.218 1.218 21 H -0.220 1.220 22 H 0.104 0.896 23 H 0.095 0.905 24 H 0.109 0.891 25 H 0.128 0.872 26 H 0.112 0.888 27 H 0.083 0.917 28 H 0.096 0.904 29 H 0.066 0.934 30 H 0.117 0.883 31 H 0.086 0.914 32 H 0.063 0.937 33 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.904 3.472 -12.008 16.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C 0.244 3.756 3 O -0.372 6.372 4 C -0.253 4.253 5 C 0.046 3.954 6 H 0.067 0.933 7 C -0.149 4.149 8 C -0.161 4.161 9 C -0.016 4.016 10 N -0.849 5.849 11 S 2.817 3.183 12 O -1.004 7.004 13 O -1.013 7.013 14 C -1.179 5.179 15 H 0.113 0.887 16 C -0.113 4.113 17 N -0.487 5.487 18 Si 0.644 3.356 19 H -0.161 1.161 20 H -0.140 1.140 21 H -0.142 1.142 22 H 0.122 0.878 23 H 0.113 0.887 24 H 0.127 0.873 25 H 0.146 0.854 26 H 0.129 0.871 27 H 0.101 0.899 28 H 0.115 0.885 29 H 0.085 0.915 30 H 0.135 0.865 31 H 0.104 0.896 32 H 0.082 0.918 33 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -11.040 3.230 -11.620 16.350 hybrid contribution 0.882 -0.171 1.114 1.431 sum -10.159 3.059 -10.506 14.931 Atomic orbital electron populations 1.22290 0.90987 1.06290 1.05777 1.24854 0.93634 0.88705 0.68361 1.90380 1.73041 1.35872 1.37869 1.23050 0.95378 0.99609 1.07245 1.21246 0.90134 0.83848 1.00206 0.93258 1.22661 0.98412 1.00443 0.93380 1.22820 0.97347 0.93362 1.02553 1.22234 0.96320 0.99251 0.83798 1.58414 1.61375 1.36647 1.28515 1.00043 0.74330 0.71913 0.72020 1.93365 1.49506 1.85840 1.71660 1.93373 1.86099 1.41068 1.80806 1.31190 1.36783 1.28144 1.21764 0.88698 1.25290 0.94343 0.97595 0.94035 1.70026 1.26450 1.39302 1.12951 0.87445 0.82626 0.81495 0.84007 1.16145 1.14045 1.14247 0.87816 0.88653 0.87252 0.85413 0.87052 0.89865 0.88537 0.91525 0.86492 0.89594 0.91827 0.89801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.15 10.25 71.24 0.73 -2.42 16 2 C 0.37 9.39 6.97 29.10 0.20 9.59 16 3 O -0.49 -15.80 15.67 -1.45 -0.02 -15.82 16 4 C -0.21 -6.25 5.08 29.84 0.15 -6.10 16 5 C 0.15 5.19 2.74 45.29 0.12 5.32 16 6 H 0.05 1.96 7.90 -2.39 -0.02 1.94 16 7 C -0.11 -2.78 5.48 31.78 0.17 -2.60 16 8 C -0.12 -2.94 7.08 31.99 0.23 -2.71 16 9 C 0.11 3.39 6.98 86.86 0.61 4.00 16 10 N -1.01 -39.83 3.41 -483.67 -1.65 -41.48 16 11 S 2.72 136.69 4.40 -56.49 -0.25 136.44 16 12 O -1.01 -52.02 13.15 -128.00 -1.68 -53.70 16 13 O -1.02 -54.28 16.42 -128.00 -2.10 -56.38 16 14 C -1.05 -61.53 10.29 67.74 0.70 -60.83 16 15 H 0.09 5.85 8.06 -2.91 -0.02 5.83 16 16 C 0.10 6.13 5.47 84.66 0.46 6.60 16 17 N -0.86 -51.24 13.96 21.45 0.30 -50.94 16 18 Si 0.83 41.41 26.54 68.60 1.82 43.23 16 19 H -0.24 -11.52 7.11 99.48 0.71 -10.81 16 20 H -0.22 -9.60 7.11 99.48 0.71 -8.89 16 21 H -0.22 -11.03 5.61 99.48 0.56 -10.47 16 22 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 23 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 24 H 0.11 1.21 8.12 -2.39 -0.02 1.19 16 25 H 0.13 2.85 8.06 -2.39 -0.02 2.83 16 26 H 0.11 3.88 5.62 -2.38 -0.01 3.86 16 27 H 0.08 2.12 7.75 -2.39 -0.02 2.10 16 28 H 0.10 1.89 7.79 -2.38 -0.02 1.87 16 29 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.12 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 32 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.29 15.60 8.31 -92.71 -0.77 14.83 16 Total: -1.00 -73.49 284.18 0.74 -72.75 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: 0.95 Total: 15.07 kcal Atomic # 6 Polarization: -52.54 SS G_CDS: 3.38 Total: -49.16 kcal Atomic # 7 Polarization: -91.07 SS G_CDS: -1.35 Total: -92.42 kcal Atomic # 8 Polarization: -122.10 SS G_CDS: -3.81 Total: -125.91 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 1.82 Total: 43.23 kcal Atomic # 16 Polarization: 136.69 SS G_CDS: -0.25 Total: 136.44 kcal Total: -73.49 0.74 -72.75 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086497131.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.400 kcal (2) G-P(sol) polarization free energy of solvation -73.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds