Wall clock time and date at job start Mon Mar 30 2020 04:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00282 * 2 1 4 4 H 1.48503 * 109.47407 * 89.99943 * 3 2 1 5 5 H 1.48505 * 109.47281 * 209.99699 * 3 2 1 6 6 H 1.48501 * 109.47274 * 329.99797 * 3 2 1 7 7 C 1.37884 * 119.99707 * 180.27224 * 2 1 3 8 8 H 1.07999 * 120.00052 * 0.02562 * 7 2 1 9 9 S 1.76199 * 119.99971 * 180.02562 * 7 2 1 10 10 O 1.42099 * 106.40136 * 293.53928 * 9 7 2 11 11 O 1.42100 * 106.40287 * 66.45939 * 9 7 2 12 12 N 1.65599 * 107.21905 * 180.02562 * 9 7 2 13 13 C 1.46581 * 125.29830 * 269.69735 * 12 9 7 14 14 C 1.54405 * 107.10047 * 162.55856 * 13 12 9 15 15 H 1.08999 * 112.62053 * 262.88230 * 14 13 12 16 16 C 1.53847 * 107.98424 * 137.65196 * 14 13 12 17 17 C 1.53613 * 107.36634 * 249.44618 * 16 14 13 18 18 C 1.54043 * 105.89875 * 17.93454 * 17 16 14 19 19 H 1.09000 * 110.36114 * 89.44991 * 18 17 16 20 20 O 1.42898 * 110.36436 * 211.75171 * 18 17 16 21 21 C 1.53462 * 104.88383 * 330.60176 * 18 17 16 22 22 H 1.09002 * 111.67228 * 268.28894 * 21 18 17 23 23 C 1.46591 * 125.30006 * 89.99594 * 12 9 7 24 24 H 0.97005 * 119.99656 * 359.72615 * 1 2 3 25 25 H 1.09006 * 109.89660 * 282.05971 * 13 12 9 26 26 H 1.08997 * 109.89893 * 43.27647 * 13 12 9 27 27 H 1.09003 * 109.86480 * 8.88966 * 16 14 13 28 28 H 1.08994 * 109.86894 * 129.99736 * 16 14 13 29 29 H 1.08993 * 110.17017 * 137.04421 * 17 16 14 30 30 H 1.09003 * 110.16146 * 258.83353 * 17 16 14 31 31 H 0.96707 * 113.99510 * 295.46247 * 20 18 17 32 32 H 1.08997 * 109.74539 * 302.46872 * 23 12 9 33 33 H 1.09004 * 109.74434 * 63.11987 * 23 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4400 -0.7000 6 1 1.4467 2.6526 -0.7001 7 6 2.0045 -1.1941 -0.0057 8 1 1.4645 -2.1294 -0.0105 9 16 3.7665 -1.1942 -0.0050 10 8 4.1682 -0.6436 -1.2518 11 8 4.1673 -0.6560 1.2476 12 7 4.2566 -2.7760 -0.0134 13 6 4.5129 -3.5896 1.1786 14 6 4.5061 -5.0670 0.7300 15 1 3.5459 -5.5532 0.9027 16 6 5.6721 -5.7826 1.4337 17 6 6.7174 -6.1210 0.3601 18 6 6.3887 -5.2222 -0.8470 19 1 6.9169 -4.2721 -0.7673 20 8 6.7323 -5.8825 -2.0668 21 6 4.8725 -4.9980 -0.7702 22 1 4.3255 -5.7444 -1.3463 23 6 4.5077 -3.5786 -1.2140 24 1 -0.4850 0.8401 0.0040 25 1 5.4841 -3.3324 1.6016 26 1 3.7284 -3.4235 1.9169 27 1 6.1113 -5.1252 2.1841 28 1 5.3148 -6.6984 1.9045 29 1 7.7194 -5.9028 0.7292 30 1 6.6403 -7.1712 0.0786 31 1 7.6791 -6.0504 -2.1698 32 1 3.6111 -3.6054 -1.8332 33 1 5.3330 -3.1464 -1.7800 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156461520.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:01 Heat of formation + Delta-G solvation = -133.612558 kcal Electronic energy + Delta-G solvation = -18638.494790 eV Core-core repulsion = 15597.542528 eV Total energy + Delta-G solvation = -3040.952263 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 261.087 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.95237 -36.40007 -35.64571 -34.42966 -33.85430 -33.00830 -29.98711 -28.59281 -26.37705 -25.39916 -22.32090 -20.85274 -19.49005 -18.74042 -17.65327 -17.41318 -16.66646 -15.73715 -15.20278 -14.77045 -14.42051 -14.10363 -13.82404 -13.28432 -13.09465 -12.86053 -12.72226 -12.66855 -11.91109 -11.88945 -11.42668 -11.22875 -11.01070 -10.81228 -10.75628 -10.62344 -10.51877 -10.44813 -10.34784 -9.96757 -9.76960 -9.20121 -9.12284 -8.18086 -6.79477 -5.32726 1.98856 3.07423 3.17758 3.27154 3.95779 4.04651 4.22159 4.39040 4.51031 4.59982 4.77537 5.15832 5.19280 5.34645 5.38829 5.47705 5.48564 5.52859 5.66114 5.85886 5.92070 5.99315 6.04043 6.10065 6.14194 6.24723 6.31503 6.41949 6.72953 7.27094 7.50052 7.58418 8.23651 8.71511 10.33062 Molecular weight = 261.09amu Principal moments of inertia in cm(-1) A = 0.039635 B = 0.006523 C = 0.006356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.281778 B = 4291.733736 C = 4404.459724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.153 3.847 3 Si 0.800 3.200 4 H -0.246 1.246 5 H -0.219 1.219 6 H -0.254 1.254 7 C -1.015 5.015 8 H 0.121 0.879 9 S 2.690 3.310 10 O -1.003 7.003 11 O -1.006 7.006 12 N -1.010 6.010 13 C 0.129 3.871 14 C -0.096 4.096 15 H 0.098 0.902 16 C -0.115 4.115 17 C -0.155 4.155 18 C 0.104 3.896 19 H 0.066 0.934 20 O -0.563 6.563 21 C -0.088 4.088 22 H 0.098 0.902 23 C 0.133 3.867 24 H 0.280 0.720 25 H 0.060 0.940 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.375 0.625 32 H 0.068 0.932 33 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.155 -11.815 0.871 16.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.067 4.067 3 Si 0.620 3.380 4 H -0.170 1.170 5 H -0.141 1.141 6 H -0.178 1.178 7 C -1.150 5.150 8 H 0.139 0.861 9 S 2.793 3.207 10 O -0.994 6.994 11 O -0.997 6.997 12 N -0.846 5.846 13 C 0.003 3.997 14 C -0.116 4.116 15 H 0.116 0.884 16 C -0.153 4.153 17 C -0.192 4.192 18 C 0.046 3.954 19 H 0.084 0.916 20 O -0.368 6.368 21 C -0.108 4.108 22 H 0.116 0.884 23 C 0.007 3.993 24 H 0.091 0.909 25 H 0.078 0.922 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.222 0.778 32 H 0.087 0.913 33 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 10.907 -10.865 0.779 15.415 hybrid contribution 0.042 0.411 0.143 0.437 sum 10.949 -10.454 0.922 15.166 Atomic orbital electron populations 1.69993 1.06575 1.29013 1.39692 1.24437 0.94795 0.98799 0.88648 0.87886 0.83678 0.84571 0.81842 1.16999 1.14129 1.17805 1.30541 1.15730 1.02145 1.66554 0.86096 1.01032 0.77150 0.69313 0.73158 1.93459 1.85367 1.75121 1.45438 1.93402 1.85413 1.75632 1.45231 1.58390 1.84764 1.30371 1.11026 1.21826 1.00983 0.88882 0.88035 1.22612 0.99326 0.95917 0.93703 0.88406 1.22040 0.94964 1.00596 0.97704 1.22806 0.99365 1.00739 0.96330 1.22483 0.95493 0.94326 0.83140 0.91562 1.86541 1.29291 1.81009 1.39990 1.22168 0.94374 0.97567 0.96642 0.88357 1.21295 1.01116 0.89349 0.87569 0.90912 0.92152 0.90858 0.90891 0.91355 0.91505 0.90788 0.77841 0.91338 0.91657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -24.11 13.96 55.43 0.77 -23.34 16 2 C 0.15 4.46 5.47 -17.82 -0.10 4.36 16 3 Si 0.80 20.84 26.55 -169.99 -4.51 16.33 16 4 H -0.25 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.22 -5.81 5.59 56.52 0.32 -5.50 16 6 H -0.25 -6.05 7.11 56.52 0.40 -5.65 16 7 C -1.02 -28.92 10.29 30.60 0.31 -28.60 16 8 H 0.12 3.49 8.06 -52.49 -0.42 3.06 16 9 S 2.69 69.05 4.42 -107.50 -0.48 68.57 16 10 O -1.00 -27.52 15.56 -57.17 -0.89 -28.41 16 11 O -1.01 -27.24 16.41 -57.17 -0.94 -28.18 16 12 N -1.01 -20.40 3.67 -113.37 -0.42 -20.82 16 13 C 0.13 2.13 6.39 -3.26 -0.02 2.11 16 14 C -0.10 -1.24 4.06 -88.61 -0.36 -1.60 16 15 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 16 C -0.12 -1.16 6.33 -25.97 -0.16 -1.33 16 17 C -0.15 -1.47 6.51 -25.87 -0.17 -1.63 16 18 C 0.10 1.23 3.67 -25.95 -0.10 1.13 16 19 H 0.07 0.82 7.68 -51.93 -0.40 0.42 16 20 O -0.56 -6.34 13.36 -35.23 -0.47 -6.81 16 21 C -0.09 -1.20 3.33 -89.49 -0.30 -1.50 16 22 H 0.10 1.29 8.12 -51.93 -0.42 0.87 16 23 C 0.13 2.31 6.47 -3.93 -0.03 2.29 16 24 H 0.28 7.43 8.31 -40.82 -0.34 7.09 16 25 H 0.06 0.92 7.18 -51.93 -0.37 0.55 16 26 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 27 H 0.07 0.71 7.10 -51.93 -0.37 0.35 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.66 8.11 -51.93 -0.42 0.24 16 31 H 0.37 2.51 9.12 45.56 0.42 2.93 16 32 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 33 H 0.07 1.13 7.59 -51.93 -0.39 0.73 16 LS Contribution 278.22 15.07 4.19 4.19 Total: -1.00 -33.98 278.22 -7.37 -41.35 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -3.72 Total: 1.89 kcal Atomic # 6 Polarization: -23.86 SS G_CDS: -0.91 Total: -24.78 kcal Atomic # 7 Polarization: -44.51 SS G_CDS: 0.36 Total: -44.16 kcal Atomic # 8 Polarization: -61.11 SS G_CDS: -2.30 Total: -63.41 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.51 Total: 16.33 kcal Atomic # 16 Polarization: 69.05 SS G_CDS: -0.48 Total: 68.57 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -33.98 -7.37 -41.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156461520.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.264 kcal (2) G-P(sol) polarization free energy of solvation -33.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds